Atom Nomenclature for INV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for INV

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
O08 O08
N09 N09
C10 C10
S11 S11
NP2 NP2
O13 O13
O14 O14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
F21 F21
H011 1H01
H021 1H02
H041 1H04
H051 1H05
H091 1H09
H101 1H10
H102 2H10
HP21 1HP2
HP22 2HP2
H161 1H16
H171 1H17
H191 1H19
H201 1H20