Atom Nomenclature for INQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for INQ

Atom Name (V3) Atom Name (V2)
S01 S01
O02 O02
N03 N03
C04 C04
C05 C05
C06 C06
C07 C07
S08 S08
C09 C09
C10 C10
N11 N11
S12 S12
O13 O13
O14 O14
C15 C15
C16 C16
C17 C17
O18 O18
C19 C19
C20 C20
N21 N21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
O28 O28
O29 O29
H031 1H03
H032 2H03
H051 1H05
H091 1H09
H151 1H15
H152 2H15
H161 1H16
H162 2H16
H171 1H17
H172 2H17
H191 1H19
H192 2H19
H201 1H20
H202 2H20
H221 1H22
H241 1H24
H251 1H25
H261 1H26
H281 1H28