PDB Chemical Component IN5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IN5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.409	1.318
C1	C5	1.397	1.382
C1	H1	1.104	1.080
C2	C3	1.407	1.387
C2	N1	1.403	1.318
C2	C6	1.507	1.507
C3	C4	1.421	1.391
C3	O1	1.388	1.359
O4	P1	1.589	1.480
O5	P1	1.590	1.609
O5	HO5	0.950	0.967
C7	C5	1.507	1.508
C7	O2	1.431	1.429
C7	H71	1.115	1.089
C7	H72	1.115	1.089
C8	C4	1.482	1.507
C8	N2	1.345	1.468
C8	H81	1.116	1.090
C8	H82	1.115	1.089
C9	C10	1.546	1.529
C9	N2	1.437	1.468
C9	P2	1.825	1.823
C9	H9	1.115	1.090
C10	H101	1.115	1.090
C10	H102	1.116	1.090
C10	H103	1.114	1.090
C4	C5	1.431	1.385
O1	HO1	0.950	0.967
C6	H61	1.115	1.090
C6	H62	1.115	1.090
C6	H63	1.115	1.090
O2	P1	1.555	1.609
N2	HN2	1.020	1.009
P1	O3	1.590	1.609
O3	HO3	0.950	0.967
P2	O6	1.540	1.480
P2	O7	1.547	1.610
P2	O8	1.572	1.609
O7	HO7	0.950	0.967
O8	HO8	0.950	0.968

Bond Angles for IN5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	C5	119.8	120.9
N1	C1	H1	120.5	119.5
C1	N1	C2	121.2	121.8
C5	C1	H1	119.7	119.5
C1	C5	C7	117.3	120.4
C1	C5	C4	119.7	119.2
C3	C2	N1	119.8	120.7
C3	C2	C6	118.6	119.7
C2	C3	C4	119.7	119.1
C2	C3	O1	120.1	120.4
N1	C2	C6	121.7	119.6
C2	C6	H61	118.6	109.5
C2	C6	H62	108.9	109.5
C2	C6	H63	108.9	109.5
C4	C3	O1	120.3	120.5
C3	C4	C8	120.8	120.8
C3	C4	C5	119.9	118.3
C3	O1	HO1	120.0	106.8
O4	P1	O5	109.6	109.5
O4	P1	O2	107.9	109.5
O4	P1	O3	110.7	109.5
P1	O5	HO5	109.6	106.8
O5	P1	O2	109.6	109.5
O5	P1	O3	108.4	109.5
C5	C7	O2	107.7	109.4
C5	C7	H71	112.9	109.4
C5	C7	H72	112.9	109.4
C7	C5	C4	123.0	120.3
O2	C7	H71	112.8	109.5
O2	C7	H72	112.9	109.5
C7	O2	P1	119.4	106.8
H71	C7	H72	97.6	109.5
C4	C8	N2	121.5	109.5
C4	C8	H81	107.9	109.5
C4	C8	H82	107.9	109.4
C8	C4	C5	119.3	120.9
N2	C8	H81	107.9	109.5
N2	C8	H82	107.9	109.5
C8	N2	C9	121.0	106.7
C8	N2	HN2	108.0	106.6
H81	C8	H82	101.9	109.5
C10	C9	N2	110.3	109.5
C10	C9	P2	100.3	109.5
C10	C9	H9	114.3	109.5
C9	C10	H101	110.3	109.5
C9	C10	H102	111.9	109.5
C9	C10	H103	111.9	109.5
N2	C9	P2	108.3	109.5
N2	C9	H9	107.1	109.4
C9	N2	HN2	108.1	106.8
P2	C9	H9	116.2	109.5
C9	P2	O6	116.5	109.5
C9	P2	O7	99.8	109.5
C9	P2	O8	107.9	109.5
H101	C10	H102	111.9	109.5
H101	C10	H103	111.9	109.5
H102	C10	H103	98.5	109.5
H61	C6	H62	108.9	109.4
H61	C6	H63	108.9	109.5
H62	C6	H63	101.2	109.5
O2	P1	O3	110.7	109.5
P1	O3	HO3	110.7	106.8
O6	P2	O7	116.7	109.5
O6	P2	O8	112.1	109.5
O7	P2	O8	102.2	109.5
P2	O7	HO7	99.8	106.8
P2	O8	HO8	107.8	106.8

Torsion Angles for IN5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C1	N1	H1	180.0	179.8
N1	C1	C5	C7	179.5	180.0
N1	C1	C5	C4	0.2	0.4
C3	C2	N1	C1	0.0	359.9
C1	N1	C2	C6	180.3	180.0
N1	C1	C5	H1	180.0	180.2
C5	C1	N1	C2	359.9	359.8
C3	C4	C5	C1	359.8	359.6
C1	C5	C7	O2	240.4	360.0
C1	C5	C7	H71	5.6	119.9
C1	C5	C7	H72	115.1	239.9
C7	C5	C1	C4	179.3	179.6
C8	C4	C5	C1	179.8	179.8
N1	C1	H1	C5	180.0	179.8
H1	C1	N1	C2	179.9	180.0
H1	C1	C5	C7	359.5	359.8
H1	C1	C5	C4	180.2	180.2
C1	N1	C2	C3	0.0	359.9
N1	C2	C3	C6	180.3	180.1
C3	C2	C6	H61	180.0	90.1
C3	C2	C6	H62	305.2	210.0
C3	C2	C6	H63	54.7	330.1
C4	C3	C2	O1	179.8	180.1
C2	C3	C4	C8	180.1	180.0
C2	C3	C4	C5	0.1	0.2
C2	C3	O1	HO1	180.0	270.1
C2	N1	C1	C5	359.9	359.8
C2	N1	C1	H1	179.9	180.0
C3	C2	N1	C6	179.7	179.9
N1	C2	C3	C4	360.0	0.1
N1	C2	C3	O1	180.1	180.0
N1	C2	C6	H61	359.8	270.0
N1	C2	C6	H62	125.0	30.0
N1	C2	C6	H63	234.5	150.0
C3	C2	C6	N1	180.3	180.1
C6	C2	C3	C4	179.7	180.0
C6	C2	C3	O1	359.9	359.9
H61	C6	C2	H62	234.8	240.0
H61	C6	C2	H63	125.3	120.0
H62	C6	C2	H63	250.5	240.0
C1	C5	C4	C3	359.8	359.6
C4	C3	C2	N1	360.0	0.1
C4	C3	C2	C6	179.7	180.0
C2	C3	C4	O1	180.2	179.9
C4	C3	O1	HO1	0.2	90.0
C7	C5	C4	C3	180.6	180.0
C3	C4	C8	N2	1.9	90.0
C3	C4	C8	H81	127.2	329.9
C3	C4	C8	H82	236.6	210.0
C8	C4	C3	C5	180.0	179.8
O1	C3	C2	N1	180.1	180.0
O1	C3	C2	C6	359.9	359.9
C2	C3	O1	C4	179.8	180.1
O1	C3	C4	C8	359.9	0.1
O1	C3	C4	C5	179.9	180.3
O4	P1	O5	HO5	180.0	300.0
O5	P1	O4	O2	119.3	240.0
O5	P1	O4	O3	240.5	120.0
C7	O2	P1	O4	297.8	60.0
O2	P1	O4	O3	121.3	240.0
O4	P1	O3	HO3	180.0	180.0
O4	P1	O5	O2	241.8	120.0
O4	P1	O5	O3	120.9	240.0
C7	O2	P1	O5	178.5	180.0
O2	P1	O5	O3	239.1	120.0
O5	P1	O3	HO3	300.2	60.0
HO5	O5	P1	O2	298.2	180.0
HO5	O5	P1	O3	59.1	60.0
C7	C5	C1	H1	359.5	359.8
C1	C5	C7	C4	180.7	180.4
C3	C4	C5	C7	180.6	180.0
O2	C7	C5	H71	234.8	240.1
O2	C7	C5	H72	125.3	120.1
C5	C7	O2	P1	193.6	180.0
H71	C7	C5	H72	250.5	240.0
C8	C4	C5	C7	0.6	0.2
O4	P1	O2	C7	297.8	60.0
O5	P1	O2	C7	178.5	180.0
C5	C7	O2	H71	125.3	119.9
C5	C7	O2	H72	234.7	240.0
O2	C7	C5	C4	59.7	179.5
H71	C7	O2	H72	109.4	120.1
C7	O2	P1	O3	59.0	300.0
C5	C7	H71	O2	237.6	240.1
C5	C7	H71	H72	118.8	120.0
H71	C7	C5	C4	184.9	299.5
O2	C7	H71	H72	241.3	239.9
H71	C7	O2	P1	68.4	60.1
C5	C7	H72	O2	122.4	120.0
C5	C7	H72	H71	241.2	240.0
H72	C7	C5	C4	294.4	59.5
O2	C7	H72	H71	118.7	120.0
H72	C7	O2	P1	319.0	300.0
C1	C5	C4	C8	179.8	179.8
C8	C4	C3	O1	359.9	0.1
C3	C4	C8	C5	180.0	180.2
C7	C5	C4	C8	0.6	0.2
N2	C8	C4	H81	234.7	120.0
N2	C8	C4	H82	125.3	240.0
C4	C8	N2	C9	153.4	180.0
C4	C8	N2	HN2	28.1	66.1
H81	C8	C4	H82	250.6	119.9
C4	C8	N2	H81	125.3	240.0
C4	C8	N2	H82	234.7	119.9
N2	C8	C4	C5	181.9	269.8
H81	C8	N2	H82	109.5	240.0
C10	C9	N2	C8	70.7	150.0
C8	N2	C9	P2	179.6	270.0
C8	N2	C9	H9	305.7	30.0
C9	N2	C8	HN2	125.2	113.9
C4	C8	H81	N2	227.0	120.1
C4	C8	H81	H82	113.5	240.1
H81	C8	C4	C5	307.2	149.7
N2	C8	H81	H82	246.5	120.1
H81	C8	N2	C9	28.1	300.0
H81	C8	N2	HN2	262.9	186.1
C4	C8	H82	N2	133.0	240.0
C4	C8	H82	H81	246.5	119.9
H82	C8	C4	C5	56.6	29.8
N2	C8	H82	H81	113.5	240.0
H82	C8	N2	C9	278.7	60.0
H82	C8	N2	HN2	153.4	306.2
C8	N2	C9	C10	70.7	150.0
N2	C9	C10	P2	114.1	120.0
N2	C9	C10	H9	239.2	240.0
C10	C9	N2	HN2	196.0	263.7
P2	C9	C10	H9	125.1	120.0
C10	C9	P2	O6	308.7	180.0
C10	C9	P2	O7	182.1	300.0
C10	C9	P2	O8	75.8	60.1
H101	C10	C9	H102	234.8	240.0
H101	C10	C9	H103	125.3	120.0
H102	C10	C9	H103	250.5	240.0
C9	N2	C8	H81	28.1	300.0
C9	N2	C8	H82	278.7	60.0
C8	N2	C9	HN2	234.8	246.3
C10	C9	N2	P2	251.1	240.0
C10	C9	N2	H9	125.0	120.0
N2	C9	C10	H101	180.0	60.0
N2	C9	C10	H102	305.2	180.0
N2	C9	C10	H103	54.7	300.0
P2	C9	N2	H9	234.0	240.0
N2	C9	P2	O6	193.1	60.0
N2	C9	P2	O7	66.5	180.0
N2	C9	P2	O8	320.2	300.0
C10	C9	P2	N2	115.6	120.1
C10	C9	P2	H9	236.2	240.0
P2	C9	C10	H101	65.9	300.0
P2	C9	C10	H102	191.1	60.0
P2	C9	C10	H103	300.6	180.0
N2	C9	P2	H9	120.6	119.9
P2	C9	N2	HN2	304.9	23.8
O6	P2	C9	O7	126.6	240.0
O6	P2	C9	O8	232.9	120.0
O7	P2	C9	O8	106.3	240.0
C9	P2	O7	HO7	180.0	180.0
C9	P2	O8	HO8	180.0	300.0
C10	C9	H9	N2	237.4	240.0
C10	C9	H9	P2	116.2	120.0
H9	C9	C10	H101	300.8	179.9
H9	C9	C10	H102	66.1	300.0
H9	C9	C10	H103	175.5	60.0
N2	C9	H9	P2	238.8	240.0
H9	C9	N2	HN2	70.9	143.7
H9	C9	P2	O6	72.6	300.0
H9	C9	P2	O7	305.9	60.0
H9	C9	P2	O8	199.6	180.1
H101	C10	C9	N2	180.0	60.0
H101	C10	C9	P2	65.9	300.0
H101	C10	C9	H9	300.8	179.9
C9	C10	H101	H102	125.2	120.0
C9	C10	H101	H103	234.7	240.0
H102	C10	H101	H103	109.5	120.0
H102	C10	C9	N2	305.2	180.0
H102	C10	C9	P2	191.1	60.0
H102	C10	C9	H9	66.1	300.0
C9	C10	H102	H101	235.6	240.0
C9	C10	H102	H103	117.8	120.0
H101	C10	H102	H103	242.2	240.0
H103	C10	C9	N2	54.7	300.0
H103	C10	C9	P2	300.6	180.0
H103	C10	C9	H9	175.5	60.0
C9	C10	H103	H101	124.4	120.0
C9	C10	H103	H102	242.2	240.0
H101	C10	H103	H102	117.8	120.0
C4	C5	C1	H1	180.2	180.2
C1	C5	C4	C7	179.3	179.6
C5	C4	C3	O1	179.9	180.3
C3	C4	C5	C8	180.0	179.8
C4	C5	C7	O2	59.7	179.5
C4	C5	C7	H71	184.9	299.5
C4	C5	C7	H72	294.4	59.5
C5	C4	C8	N2	181.9	269.8
C5	C4	C8	H81	307.2	149.7
C5	C4	C8	H82	56.6	29.8
C2	C6	H61	H62	125.2	120.0
C2	C6	H61	H63	234.8	240.0
H62	C6	H61	H63	109.5	120.0
C2	C6	H62	H61	229.3	240.0
C2	C6	H62	H63	114.6	120.0
H61	C6	H62	H63	245.3	240.0
C2	C6	H63	H61	130.7	120.0
C2	C6	H63	H62	245.4	240.0
H61	C6	H63	H62	114.6	120.0
O4	P1	O2	O5	119.3	240.0
O4	P1	O2	O3	238.8	120.0
O2	P1	O5	HO5	298.2	180.0
O5	P1	O2	O3	119.5	240.0
P1	O2	C7	H71	68.4	60.1
P1	O2	C7	H72	319.0	300.0
O2	P1	O3	HO3	60.4	300.0
HN2	N2	C8	H81	262.9	186.1
HN2	N2	C8	H82	153.4	306.2
C8	N2	HN2	C9	132.6	113.8
HN2	N2	C9	P2	304.9	23.8
HN2	N2	C9	H9	70.9	143.7
O4	P1	O3	O5	239.8	120.0
O4	P1	O3	O2	119.6	240.0
O3	P1	O5	HO5	59.1	60.0
O5	P1	O3	O2	239.8	120.0
O6	P2	C9	H9	72.6	300.0
C9	P2	O6	O7	242.3	120.0
C9	P2	O6	O8	124.9	240.0
O7	P2	O6	O8	242.6	120.0
O6	P2	O7	HO7	53.5	300.0
O6	P2	O8	HO8	309.6	180.0
O7	P2	C9	H9	305.9	60.0
C9	P2	O7	O6	126.4	240.0
C9	P2	O7	O8	249.1	120.0
O6	P2	O7	O8	122.7	240.0
O7	P2	O8	HO8	75.3	60.0
O8	P2	C9	H9	199.6	180.1
C9	P2	O8	O6	230.4	120.0
C9	P2	O8	O7	104.7	240.0
O6	P2	O8	O7	234.2	120.0
O8	P2	O7	HO7	290.8	59.9
HO7	O7	P2	O8	290.8	59.9