PDB Chemical Component IMU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IMU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.481 1.611
P O2P 1.467 1.479
P O3P 1.482 1.609
P O5' 1.530 1.610
C2 N1 1.414 1.363
C2 N2 1.337 1.374
C2 N3 1.371 1.312
O1P HO1P 0.950 0.967
O3P HO3P 0.951 0.967
O5' C5' 1.410 1.427
C5' C4' 1.474 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.090
C4' N4' 1.424 1.486
C4' C3' 1.486 1.543
C4' H4' 1.115 1.090
N4' C1' 1.422 1.484
N4' HN4' 1.021 1.009
C3' O3' 1.418 1.429
C3' C2' 1.501 1.543
C3' H3' 1.114 1.090
O3' HO3' 0.949 0.967
C2' O2' 1.426 1.429
C2' C1' 1.556 1.543
C2' H2' 1.114 1.090
O2' HO2' 0.950 0.967
C1' C9 1.535 1.506
C1' H1' 1.115 1.090
C9 C8 1.409 1.349
C9 C4 1.408 1.412
C8 N7 1.301 1.361
C8 H8 1.103 1.079
N7 C5 1.395 1.378
N7 HN7 1.020 0.970
C5 C6 1.437 1.408
C5 C4 1.406 1.399
C6 O6 1.227 1.219
C6 N1 1.405 1.351
N1 HN1 1.020 0.971
N2 HN21 1.020 0.971
N2 HN22 1.020 0.970
N3 C4 1.389 1.348

Bond Angles for IMU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 114.0 109.5
O1P P O3P 109.9 109.4
O1P P O5' 107.7 109.5
P O1P HO1P 114.0 106.8
O2P P O3P 112.7 109.5
O2P P O5' 110.6 109.4
O3P P O5' 101.0 109.5
P O3P HO3P 109.9 106.8
P O5' C5' 127.8 106.8
N1 C2 N2 117.5 119.1
N1 C2 N3 122.7 121.8
C2 N1 C6 124.3 120.5
C2 N1 HN1 118.2 119.8
N2 C2 N3 119.8 119.1
C2 N2 HN21 117.5 120.0
C2 N2 HN22 109.3 120.0
C2 N3 C4 113.7 121.0
O5' C5' C4' 106.3 109.6
O5' C5' H5'1 113.4 109.5
O5' C5' H5'2 113.4 109.5
C4' C5' H5'1 113.4 109.5
C4' C5' H5'2 113.4 109.4
C5' C4' N4' 110.7 110.4
C5' C4' C3' 109.0 110.6
C5' C4' H4' 109.1 110.3
H5'1 C5' H5'2 97.1 109.4
N4' C4' C3' 109.9 104.6
N4' C4' H4' 108.2 110.4
C4' N4' C1' 113.2 104.3
C4' N4' HN4' 110.9 106.7
C3' C4' H4' 110.0 110.4
C4' C3' O3' 107.4 110.3
C4' C3' C2' 102.9 105.1
C4' C3' H3' 116.7 110.3
C1' N4' HN4' 110.8 106.7
N4' C1' C2' 102.6 104.7
N4' C1' C9 107.3 110.5
N4' C1' H1' 114.8 110.4
O3' C3' C2' 114.5 110.3
O3' C3' H3' 105.7 110.3
C3' O3' HO3' 107.4 106.8
C2' C3' H3' 110.0 110.4
C3' C2' O2' 111.9 110.3
C3' C2' C1' 110.0 105.0
C3' C2' H2' 107.6 110.3
O2' C2' C1' 110.0 110.6
O2' C2' H2' 107.6 110.3
C2' O2' HO2' 111.9 106.8
C1' C2' H2' 109.6 110.2
C2' C1' C9 108.6 110.5
C2' C1' H1' 113.7 110.4
C9 C1' H1' 109.4 110.3
C1' C9 C8 126.2 126.0
C1' C9 C4 130.4 126.1
C8 C9 C4 103.4 107.9
C9 C8 N7 115.5 109.5
C9 C8 H8 125.9 125.3
C9 C4 C5 106.2 106.6
C9 C4 N3 127.6 133.9
N7 C8 H8 118.6 125.3
C8 N7 C5 104.2 108.8
C8 N7 HN7 125.4 125.6
C5 N7 HN7 130.5 125.6
N7 C5 C6 129.3 134.0
N7 C5 C4 110.7 107.3
C6 C5 C4 120.0 118.7
C5 C6 O6 127.0 120.8
C5 C6 N1 113.1 118.5
C5 C4 N3 126.1 119.5
O6 C6 N1 119.9 120.8
C6 N1 HN1 117.5 119.8
HN21 N2 HN22 109.4 120.0

Torsion Angles for IMU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 232.3 240.0
O2P P O1P O5' 123.1 119.9
O3P P O1P O5' 250.8 240.0
O1P P O3P HO3P 180.0 60.0
O1P P O5' C5' 32.9 180.0
O1P P O2P O3P 126.2 120.0
O1P P O2P O5' 238.4 240.0
O2P P O1P HO1P 180.0 299.9
O3P P O2P O5' 112.2 120.0
O2P P O3P HO3P 308.4 180.0
O2P P O5' C5' 267.6 60.0
O1P P O3P O2P 231.6 240.0
O1P P O3P O5' 113.6 120.0
O3P P O1P HO1P 307.7 60.0
O2P P O3P O5' 242.0 240.0
O3P P O5' C5' 148.1 300.0
O1P P O5' O2P 125.2 120.0
O1P P O5' O3P 244.8 240.0
O5' P O1P HO1P 56.8 180.0
O2P P O5' O3P 119.6 120.1
O5' P O3P HO3P 66.4 300.1
P O5' C5' C4' 138.0 180.0
P O5' C5' H5'1 263.2 60.0
P O5' C5' H5'2 12.7 300.0
N2 C2 N1 N3 180.2 180.3
N1 C2 N2 HN21 180.0 179.7
N1 C2 N2 HN22 54.7 359.5
N1 C2 N3 C4 0.6 0.3
C5 C6 N1 C2 359.6 0.5
O6 C6 N1 C2 180.0 180.3
C6 N1 C2 HN1 179.9 179.4
N1 C2 N2 N3 179.8 179.7
N2 C2 N1 C6 179.9 179.7
N2 C2 N1 HN1 360.0 0.3
N2 C2 N3 C4 180.4 180.0
HN21 N2 C2 HN22 125.4 180.2
N1 C2 N3 N2 180.2 180.3
N3 C2 N1 C6 359.8 359.4
N3 C2 N1 HN1 179.8 180.0
N3 C2 N2 HN21 0.2 360.0
N3 C2 N2 HN22 234.9 179.8
C9 C4 N3 C2 180.1 179.9
C5 C4 N3 C2 359.6 0.0
HO1P O1P P O2P 180.0 299.9
HO1P O1P P O3P 307.7 60.0
HO1P O1P P O5' 56.8 180.0
HO3P O3P P O5' 66.4 300.1
C4' C5' O5' H5'1 234.8 120.1
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' N4' 54.0 61.4
O5' C5' C4' C3' 174.9 176.7
O5' C5' C4' H4' 295.1 299.1
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.2 239.9
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.1
N4' C4' C5' C3' 239.1 244.7
N4' C4' C5' H4' 118.9 122.3
C5' C4' N4' C1' 109.4 158.4
C5' C4' N4' HN4' 344.1 271.1
C3' C4' C5' H4' 239.9 237.5
C5' C4' C3' O3' 129.3 98.3
C5' C4' C3' C2' 250.5 217.2
C5' C4' C3' H3' 11.0 336.2
O5' C5' H5'1 C4' 238.7 120.1
O5' C5' H5'1 H5'2 119.3 240.0
C4' C5' H5'1 H5'2 240.7 119.9
H5'1 C5' C4' N4' 288.8 181.5
H5'1 C5' C4' C3' 49.7 296.7
H5'1 C5' C4' H4' 169.8 59.2
O5' C5' H5'2 C4' 121.4 239.9
O5' C5' H5'2 H5'1 240.7 120.0
C4' C5' H5'2 H5'1 119.3 240.1
H5'2 C5' C4' N4' 179.3 301.4
H5'2 C5' C4' C3' 300.2 56.6
H5'2 C5' C4' H4' 60.3 179.1
N4' C4' C5' H5'1 288.8 181.5
N4' C4' C5' H5'2 179.3 301.4
C5' C4' N4' C3' 120.4 119.0
C5' C4' N4' H4' 240.5 237.7
C3' C4' N4' H4' 120.1 118.7
N4' C4' C3' O3' 250.8 217.2
N4' C4' C3' C2' 11.9 336.1
N4' C4' C3' H3' 132.4 95.1
C1' N4' C4' HN4' 125.3 247.3
C4' N4' C1' C2' 4.7 320.6
C4' N4' C1' C9 250.3 201.7
C4' N4' C1' H1' 128.5 79.4
C3' C4' C5' H5'1 49.7 296.7
C3' C4' C5' H5'2 300.2 56.6
C5' C4' C3' N4' 238.5 241.1
C5' C4' C3' H4' 119.6 122.4
N4' C4' C3' H4' 241.0 241.3
C3' C4' N4' C1' 349.0 39.4
C3' C4' N4' HN4' 223.7 152.1
O3' C3' C4' C2' 238.8 241.1
O3' C3' C4' H3' 118.3 122.1
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 239.5 241.0
C4' C3' C2' O2' 228.3 241.0
C4' C3' C2' C1' 350.9 0.2
C4' C3' C2' H2' 110.2 118.9
H4' C4' C5' H5'1 169.8 59.2
H4' C4' C5' H5'2 60.3 179.1
C5' C4' H4' N4' 120.5 122.3
C5' C4' H4' C3' 240.5 237.4
N4' C4' H4' C3' 120.0 115.1
H4' C4' N4' C1' 228.9 280.7
H4' C4' N4' HN4' 103.6 33.4
H4' C4' C3' O3' 9.8 335.9
H4' C4' C3' C2' 130.9 94.8
H4' C4' C3' H3' 251.4 213.8
C1' N4' C4' C3' 349.0 39.4
C1' N4' C4' H4' 228.9 280.7
C4' N4' C1' HN4' 234.7 112.7
C3' C2' C1' N4' 3.2 23.7
O2' C2' C1' N4' 126.9 142.7
N4' C1' C2' H2' 245.0 264.9
C2' C1' N4' C9 114.4 118.9
C2' C1' N4' H1' 236.2 241.2
C9 C1' N4' H1' 121.8 122.3
N4' C1' C9 C8 15.9 27.0
N4' C1' C9 C4 194.7 206.9
HN4' N4' C4' C3' 223.7 152.1
HN4' N4' C4' H4' 103.6 33.4
C4' N4' HN4' C1' 126.6 249.0
HN4' N4' C1' C2' 130.0 207.9
HN4' N4' C1' C9 15.6 89.0
HN4' N4' C1' H1' 253.8 326.7
O3' C3' C4' H4' 9.8 335.9
C4' C3' O3' C2' 113.5 115.7
C4' C3' O3' H3' 234.7 237.9
C2' C3' O3' H3' 121.2 122.2
O3' C3' C2' O2' 344.5 359.9
O3' C3' C2' C1' 107.1 119.1
O3' C3' C2' H2' 226.4 237.8
C2' C3' C4' H4' 130.9 94.8
C4' C3' C2' O3' 243.8 241.1
C4' C3' C2' H3' 125.0 118.9
N4' C1' C2' C3' 3.2 23.7
O3' C3' C2' H3' 241.2 237.8
C2' C3' O3' HO3' 66.5 64.3
O2' C2' C3' C1' 237.4 240.8
O2' C2' C3' H2' 118.1 122.1
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 240.7 241.3
C3' C2' C1' C9 116.6 142.6
C3' C2' C1' H1' 238.6 264.9
H3' C3' C4' H4' 251.4 213.8
C4' C3' H3' O3' 119.3 122.1
C4' C3' H3' C2' 243.3 244.3
O3' C3' H3' C2' 124.1 122.2
H3' C3' O3' HO3' 305.3 302.1
H3' C3' C2' O2' 103.3 122.1
H3' C3' C2' C1' 225.9 241.3
H3' C3' C2' H2' 345.2 360.0
HO3' O3' C3' C2' 66.5 64.3
HO3' O3' C3' H3' 305.3 302.1
N4' C1' C2' O2' 126.9 142.7
O2' C2' C3' H3' 103.3 122.1
C3' C2' O2' C1' 122.6 115.7
C3' C2' O2' H2' 241.9 237.9
C1' C2' O2' H2' 119.3 122.2
O2' C2' C1' C9 240.3 261.6
O2' C2' C1' H1' 2.3 23.9
C2' C1' N4' HN4' 130.0 207.9
N4' C1' C2' C9 246.6 241.1
N4' C1' C2' H1' 124.6 118.8
C1' C2' C3' H3' 225.9 241.3
C3' C2' C1' O2' 236.3 241.0
C3' C2' C1' H2' 118.2 118.8
O2' C2' C1' H2' 241.8 237.8
C1' C2' O2' HO2' 57.4 182.8
C9 C1' C2' H1' 238.0 237.7
C2' C1' C9 C8 265.6 271.6
C2' C1' C9 C4 84.5 91.5
H2' C2' C3' H3' 345.2 360.0
C3' C2' H2' O2' 120.8 122.1
C3' C2' H2' C1' 240.4 244.5
O2' C2' H2' C1' 119.6 122.4
H2' C2' O2' HO2' 298.0 60.6
H2' C2' C1' C9 358.5 23.8
H2' C2' C1' H1' 120.5 146.1
HO2' O2' C2' C1' 57.4 182.8
HO2' O2' C2' H2' 298.0 60.6
C9 C1' N4' HN4' 15.6 89.0
N4' C1' C9 C2' 110.3 115.4
N4' C1' C9 H1' 234.9 237.7
C9 C1' C2' H2' 358.5 23.8
C2' C1' C9 H1' 124.6 122.3
C8 C9 C1' C4 181.2 180.1
C1' C9 C8 N7 179.1 180.0
C1' C9 C8 H8 359.0 360.0
C1' C9 C4 C5 181.4 180.0
C1' C9 C4 N3 0.9 0.1
H1' C1' N4' HN4' 253.8 326.7
N4' C1' H1' C2' 242.3 244.7
N4' C1' H1' C9 120.7 122.3
H1' C1' C2' H2' 120.5 146.1
C2' C1' H1' C9 238.4 237.6
H1' C1' C9 C8 141.0 149.3
H1' C1' C9 C4 319.8 329.2
C8 C9 C1' H1' 141.0 149.3
C1' C9 C8 C4 179.1 179.9
C8 C9 C4 C5 0.4 359.9
C8 C9 C4 N3 179.9 180.0
N7 C8 C9 H8 180.0 180.0
C9 C8 N7 C5 359.6 0.0
C9 C8 N7 HN7 179.6 179.9
C2 N3 C4 C9 180.1 179.9
C4 C9 C1' H1' 319.8 329.2
C1' C9 C4 C8 181.0 180.1
C4 C9 C8 N7 0.0 0.1
C4 C9 C8 H8 180.0 180.0
N7 C5 C4 C9 359.4 0.1
C6 C5 C4 C9 179.4 180.0
C5 C4 C9 N3 180.4 179.9
N7 C8 C9 C4 0.0 0.1
C9 C8 N7 H8 180.0 180.0
C5 N7 C8 HN7 180.1 180.1
C8 N7 C5 C6 180.6 180.0
C8 N7 C5 C4 0.6 359.9
H8 C8 C9 C4 180.0 180.0
C9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.7 180.0
H8 C8 N7 HN7 359.6 359.9
C9 C4 C5 N7 359.4 0.1
C5 N7 C8 H8 179.7 180.0
C8 N7 C5 HN7 179.9 179.9
C6 C5 N7 C4 180.0 180.1
N7 C5 C6 O6 0.1 359.9
N7 C5 C6 N1 180.6 179.7
N7 C5 C4 N3 179.8 180.0
HN7 N7 C8 H8 359.6 359.9
C8 N7 HN7 C5 180.1 180.1
HN7 N7 C5 C6 0.6 0.2
HN7 N7 C5 C4 180.7 180.1
C2 N1 C6 C5 359.6 0.5
C9 C4 C5 C6 179.4 180.0
C6 C5 N7 HN7 0.6 0.2
N7 C5 C6 C4 180.0 179.9
C6 C5 C4 N3 359.8 359.9
O6 C6 C5 N1 179.6 180.2
C5 C6 N1 HN1 179.6 180.0
C2 N3 C4 C5 359.6 0.0
C9 C4 C5 N3 179.6 180.1
C4 C5 N7 HN7 180.7 180.1
N7 C5 C4 C6 180.0 180.1
C4 C5 C6 O6 180.1 180.0
C4 C5 C6 N1 0.5 359.8
C2 N1 C6 O6 180.0 180.3
O6 C6 C5 C4 180.1 180.0
C5 C6 O6 N1 180.5 179.7
O6 C6 N1 HN1 360.0 359.7
C6 N1 C2 N2 179.9 179.7
C6 N1 C2 N3 359.8 359.4
C2 N1 C6 HN1 180.1 180.6
N1 C6 C5 C4 0.5 359.8
C5 C6 N1 O6 179.6 180.2
HN1 N1 C2 N2 360.0 0.3
HN1 N1 C2 N3 179.8 180.0
C2 N1 HN1 C6 179.9 179.4
HN21 N2 C2 N3 0.2 360.0
C2 N2 HN21 HN22 234.7 179.8
HN22 N2 C2 N3 234.9 179.8
C2 N2 HN22 HN21 129.9 180.2
C9 C4 N3 C5 180.5 179.9