PDB Chemical Component IMR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IMR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5' |
C5' |
1.418 |
1.428 |
| O5' |
HO'5 |
0.949 |
0.967 |
| C5' |
C4' |
1.479 |
1.531 |
| C5' |
H5'1 |
1.115 |
1.090 |
| C5' |
H5'2 |
1.115 |
1.091 |
| C4' |
N4' |
1.435 |
1.478 |
| C4' |
C3' |
1.507 |
1.538 |
| C4' |
H4' |
1.116 |
1.090 |
| N4' |
C1' |
1.432 |
1.484 |
| N4' |
HN'4 |
1.020 |
1.009 |
| C3' |
O3' |
1.441 |
1.428 |
| C3' |
C2' |
1.479 |
1.550 |
| C3' |
H3' |
1.115 |
1.091 |
| O3' |
HO'3 |
0.950 |
0.967 |
| C2' |
O2' |
1.426 |
1.428 |
| C2' |
C1' |
1.535 |
1.549 |
| C2' |
H2' |
1.114 |
1.091 |
| O2' |
HO'2 |
0.950 |
0.967 |
| C1' |
H1'1 |
1.116 |
1.089 |
| C1' |
H1'2 |
1.115 |
1.091 |
Bond Angles for IMR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5' |
O5' |
HO'5 |
107.6 |
106.9 |
| O5' |
C5' |
C4' |
107.5 |
109.5 |
| O5' |
C5' |
H5'1 |
112.9 |
109.5 |
| O5' |
C5' |
H5'2 |
112.9 |
109.5 |
| C4' |
C5' |
H5'1 |
112.9 |
109.4 |
| C4' |
C5' |
H5'2 |
112.9 |
109.4 |
| C5' |
C4' |
N4' |
113.4 |
109.9 |
| C5' |
C4' |
C3' |
112.3 |
109.9 |
| C5' |
C4' |
H4' |
103.8 |
109.9 |
| H5'1 |
C5' |
H5'2 |
97.6 |
109.5 |
| N4' |
C4' |
C3' |
106.3 |
107.3 |
| N4' |
C4' |
H4' |
110.0 |
109.9 |
| C4' |
N4' |
C1' |
112.1 |
105.8 |
| C4' |
N4' |
HN'4 |
111.2 |
106.7 |
| C3' |
C4' |
H4' |
111.2 |
109.9 |
| C4' |
C3' |
O3' |
105.4 |
110.7 |
| C4' |
C3' |
C2' |
102.4 |
104.9 |
| C4' |
C3' |
H3' |
117.4 |
110.3 |
| C1' |
N4' |
HN'4 |
111.3 |
106.7 |
| N4' |
C1' |
C2' |
103.1 |
103.2 |
| N4' |
C1' |
H1'1 |
114.6 |
110.7 |
| N4' |
C1' |
H1'2 |
114.6 |
110.7 |
| O3' |
C3' |
C2' |
112.5 |
110.3 |
| O3' |
C3' |
H3' |
108.1 |
110.2 |
| C3' |
O3' |
HO'3 |
105.5 |
106.9 |
| C2' |
C3' |
H3' |
110.9 |
110.3 |
| C3' |
C2' |
O2' |
110.5 |
110.8 |
| C3' |
C2' |
C1' |
107.9 |
102.9 |
| C3' |
C2' |
H2' |
110.5 |
110.8 |
| O2' |
C2' |
C1' |
111.3 |
110.8 |
| O2' |
C2' |
H2' |
107.0 |
110.7 |
| C2' |
O2' |
HO'2 |
110.5 |
106.8 |
| C1' |
C2' |
H2' |
109.7 |
110.7 |
| C2' |
C1' |
H1'1 |
114.6 |
110.7 |
| C2' |
C1' |
H1'2 |
114.7 |
110.6 |
| H1'1 |
C1' |
H1'2 |
95.9 |
110.7 |
Torsion Angles for IMR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4' |
C5' |
O5' |
H5'1 |
234.7 |
240.0 |
| C4' |
C5' |
O5' |
H5'2 |
125.2 |
120.0 |
| O5' |
C5' |
C4' |
N4' |
59.4 |
61.8 |
| O5' |
C5' |
C4' |
C3' |
179.9 |
179.7 |
| O5' |
C5' |
C4' |
H4' |
300.0 |
300.7 |
| H5'1 |
C5' |
O5' |
H5'2 |
250.5 |
240.0 |
| HO'5 |
O5' |
C5' |
C4' |
180.0 |
180.0 |
| HO'5 |
O5' |
C5' |
H5'1 |
305.2 |
300.0 |
| HO'5 |
O5' |
C5' |
H5'2 |
54.8 |
60.0 |
| C4' |
C5' |
O5' |
HO'5 |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H5'1 |
125.3 |
120.0 |
| O5' |
C5' |
C4' |
H5'2 |
234.8 |
240.0 |
| H5'1 |
C5' |
C4' |
H5'2 |
109.5 |
119.9 |
| N4' |
C4' |
C5' |
C3' |
239.5 |
242.2 |
| N4' |
C4' |
C5' |
H4' |
119.4 |
121.1 |
| C5' |
C4' |
N4' |
C1' |
106.5 |
144.7 |
| C5' |
C4' |
N4' |
HN'4 |
341.2 |
258.1 |
| C3' |
C4' |
C5' |
H4' |
239.8 |
238.9 |
| C5' |
C4' |
C3' |
O3' |
144.8 |
120.5 |
| C5' |
C4' |
C3' |
C2' |
262.7 |
239.4 |
| C5' |
C4' |
C3' |
H3' |
24.4 |
358.2 |
| H5'1 |
C5' |
O5' |
HO'5 |
305.2 |
300.0 |
| O5' |
C5' |
H5'1 |
C4' |
237.7 |
239.9 |
| O5' |
C5' |
H5'1 |
H5'2 |
118.9 |
120.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
241.2 |
240.1 |
| H5'1 |
C5' |
C4' |
N4' |
294.2 |
301.8 |
| H5'1 |
C5' |
C4' |
C3' |
54.6 |
59.6 |
| H5'1 |
C5' |
C4' |
H4' |
174.8 |
180.7 |
| H5'2 |
C5' |
O5' |
HO'5 |
54.8 |
60.0 |
| O5' |
C5' |
H5'2 |
C4' |
122.3 |
120.1 |
| O5' |
C5' |
H5'2 |
H5'1 |
241.1 |
240.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
118.9 |
119.9 |
| H5'2 |
C5' |
C4' |
N4' |
184.7 |
181.8 |
| H5'2 |
C5' |
C4' |
C3' |
305.1 |
299.7 |
| H5'2 |
C5' |
C4' |
H4' |
65.3 |
60.8 |
| N4' |
C4' |
C5' |
H5'1 |
294.2 |
301.8 |
| N4' |
C4' |
C5' |
H5'2 |
184.7 |
181.8 |
| C5' |
C4' |
N4' |
C3' |
123.8 |
119.5 |
| C5' |
C4' |
N4' |
H4' |
244.3 |
238.9 |
| C3' |
C4' |
N4' |
H4' |
120.5 |
119.5 |
| N4' |
C4' |
C3' |
O3' |
269.3 |
239.9 |
| N4' |
C4' |
C3' |
C2' |
27.2 |
358.9 |
| N4' |
C4' |
C3' |
H3' |
148.9 |
117.7 |
| C1' |
N4' |
C4' |
HN'4 |
125.3 |
246.6 |
| C4' |
N4' |
C1' |
C2' |
0.0 |
320.8 |
| C4' |
N4' |
C1' |
H1'1 |
125.2 |
202.3 |
| C4' |
N4' |
C1' |
H1'2 |
234.7 |
79.2 |
| C3' |
C4' |
C5' |
H5'1 |
54.6 |
59.6 |
| C3' |
C4' |
C5' |
H5'2 |
305.1 |
299.7 |
| C5' |
C4' |
C3' |
N4' |
235.5 |
240.6 |
| C5' |
C4' |
C3' |
H4' |
115.8 |
121.1 |
| N4' |
C4' |
C3' |
H4' |
240.3 |
240.5 |
| C3' |
C4' |
N4' |
C1' |
342.7 |
25.2 |
| C3' |
C4' |
N4' |
HN'4 |
217.3 |
138.6 |
| O3' |
C3' |
C4' |
C2' |
242.1 |
241.1 |
| O3' |
C3' |
C4' |
H3' |
120.4 |
122.3 |
| C4' |
C3' |
O3' |
HO'3 |
180.0 |
177.1 |
| C2' |
C3' |
C4' |
H3' |
238.3 |
241.2 |
| C4' |
C3' |
C2' |
O2' |
210.6 |
219.5 |
| C4' |
C3' |
C2' |
C1' |
332.4 |
338.0 |
| C4' |
C3' |
C2' |
H2' |
92.3 |
96.3 |
| H4' |
C4' |
C5' |
H5'1 |
174.8 |
180.7 |
| H4' |
C4' |
C5' |
H5'2 |
65.3 |
60.8 |
| C5' |
C4' |
H4' |
N4' |
121.6 |
121.1 |
| C5' |
C4' |
H4' |
C3' |
239.1 |
238.9 |
| N4' |
C4' |
H4' |
C3' |
117.5 |
117.8 |
| H4' |
C4' |
N4' |
C1' |
222.2 |
265.8 |
| H4' |
C4' |
N4' |
HN'4 |
96.8 |
19.1 |
| H4' |
C4' |
C3' |
O3' |
29.0 |
359.4 |
| H4' |
C4' |
C3' |
C2' |
146.9 |
118.4 |
| H4' |
C4' |
C3' |
H3' |
268.6 |
237.1 |
| C1' |
N4' |
C4' |
C3' |
342.7 |
25.2 |
| C1' |
N4' |
C4' |
H4' |
222.2 |
265.8 |
| C4' |
N4' |
C1' |
HN'4 |
234.7 |
113.4 |
| C3' |
C2' |
C1' |
N4' |
17.8 |
37.5 |
| O2' |
C2' |
C1' |
N4' |
139.2 |
155.9 |
| N4' |
C1' |
C2' |
H2' |
257.4 |
279.1 |
| C2' |
C1' |
N4' |
H1'1 |
234.8 |
118.5 |
| C2' |
C1' |
N4' |
H1'2 |
125.3 |
241.7 |
| H1'1 |
C1' |
N4' |
H1'2 |
250.5 |
123.1 |
| HN'4 |
N4' |
C4' |
C3' |
217.3 |
138.6 |
| HN'4 |
N4' |
C4' |
H4' |
96.8 |
19.1 |
| C4' |
N4' |
HN'4 |
C1' |
125.8 |
247.2 |
| HN'4 |
N4' |
C1' |
C2' |
125.3 |
207.5 |
| HN'4 |
N4' |
C1' |
H1'1 |
250.6 |
88.9 |
| HN'4 |
N4' |
C1' |
H1'2 |
0.0 |
325.8 |
| O3' |
C3' |
C4' |
H4' |
29.0 |
359.4 |
| C4' |
C3' |
O3' |
C2' |
110.8 |
115.7 |
| C4' |
C3' |
O3' |
H3' |
233.7 |
237.7 |
| C2' |
C3' |
O3' |
H3' |
122.8 |
122.0 |
| O3' |
C3' |
C2' |
O2' |
323.3 |
338.7 |
| O3' |
C3' |
C2' |
C1' |
85.1 |
97.2 |
| O3' |
C3' |
C2' |
H2' |
205.0 |
215.5 |
| C2' |
C3' |
C4' |
H4' |
146.9 |
118.4 |
| C4' |
C3' |
C2' |
O3' |
247.3 |
240.8 |
| C4' |
C3' |
C2' |
H3' |
126.1 |
118.8 |
| N4' |
C1' |
C2' |
C3' |
17.8 |
37.5 |
| O3' |
C3' |
C2' |
H3' |
238.8 |
238.0 |
| C2' |
C3' |
O3' |
HO'3 |
69.2 |
61.4 |
| O2' |
C2' |
C3' |
C1' |
238.1 |
241.5 |
| O2' |
C2' |
C3' |
H2' |
118.3 |
123.2 |
| C3' |
C2' |
O2' |
HO'2 |
179.9 |
174.9 |
| C1' |
C2' |
C3' |
H2' |
240.1 |
241.7 |
| C3' |
C2' |
C1' |
H1'1 |
252.6 |
156.0 |
| C3' |
C2' |
C1' |
H1'2 |
143.1 |
279.1 |
| H3' |
C3' |
C4' |
H4' |
268.6 |
237.1 |
| C4' |
C3' |
H3' |
O3' |
119.0 |
122.6 |
| C4' |
C3' |
H3' |
C2' |
242.8 |
244.6 |
| O3' |
C3' |
H3' |
C2' |
123.8 |
122.0 |
| H3' |
C3' |
O3' |
HO'3 |
306.3 |
299.4 |
| H3' |
C3' |
C2' |
O2' |
84.5 |
100.7 |
| H3' |
C3' |
C2' |
C1' |
206.4 |
219.2 |
| H3' |
C3' |
C2' |
H2' |
326.3 |
337.5 |
| HO'3 |
O3' |
C3' |
C2' |
69.2 |
61.4 |
| HO'3 |
O3' |
C3' |
H3' |
306.3 |
299.4 |
| N4' |
C1' |
C2' |
O2' |
139.2 |
155.9 |
| O2' |
C2' |
C3' |
H3' |
84.5 |
100.7 |
| C3' |
C2' |
O2' |
C1' |
119.8 |
113.6 |
| C3' |
C2' |
O2' |
H2' |
239.6 |
236.7 |
| C1' |
C2' |
O2' |
H2' |
119.8 |
123.1 |
| O2' |
C2' |
C1' |
H1'1 |
14.0 |
274.4 |
| O2' |
C2' |
C1' |
H1'2 |
264.5 |
37.5 |
| C2' |
C1' |
N4' |
HN'4 |
125.3 |
207.5 |
| N4' |
C1' |
C2' |
H1'1 |
125.2 |
241.5 |
| N4' |
C1' |
C2' |
H1'2 |
234.7 |
118.4 |
| C1' |
C2' |
C3' |
H3' |
206.4 |
219.2 |
| C3' |
C2' |
C1' |
O2' |
238.6 |
241.5 |
| C3' |
C2' |
C1' |
H2' |
120.4 |
118.4 |
| O2' |
C2' |
C1' |
H2' |
241.8 |
236.9 |
| C1' |
C2' |
O2' |
HO'2 |
60.1 |
61.3 |
| H1'1 |
C1' |
C2' |
H1'2 |
109.5 |
236.9 |
| H2' |
C2' |
C3' |
H3' |
326.3 |
337.5 |
| C3' |
C2' |
H2' |
O2' |
120.4 |
123.3 |
| C3' |
C2' |
H2' |
C1' |
241.2 |
246.5 |
| O2' |
C2' |
H2' |
C1' |
120.8 |
123.2 |
| H2' |
C2' |
O2' |
HO'2 |
300.3 |
298.2 |
| H2' |
C2' |
C1' |
H1'1 |
132.2 |
37.6 |
| H2' |
C2' |
C1' |
H1'2 |
22.7 |
160.7 |
| HO'2 |
O2' |
C2' |
C1' |
60.1 |
61.3 |
| HO'2 |
O2' |
C2' |
H2' |
300.3 |
298.2 |
| H1'1 |
C1' |
N4' |
HN'4 |
250.6 |
88.9 |
| N4' |
C1' |
H1'1 |
C2' |
241.1 |
113.9 |
| N4' |
C1' |
H1'1 |
H1'2 |
120.5 |
236.9 |
| H1'1 |
C1' |
C2' |
H2' |
132.2 |
37.6 |
| C2' |
C1' |
H1'1 |
H1'2 |
239.5 |
123.0 |
| H1'2 |
C1' |
N4' |
HN'4 |
0.0 |
325.8 |
| N4' |
C1' |
H1'2 |
C2' |
119.0 |
246.2 |
| N4' |
C1' |
H1'2 |
H1'1 |
239.5 |
123.1 |
| H1'2 |
C1' |
C2' |
H2' |
22.7 |
160.7 |
| C2' |
C1' |
H1'2 |
H1'1 |
120.5 |
236.9 |