PDB Chemical Component IMP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IMP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
O1P |
1.494 |
1.480 |
P |
O2P |
1.551 |
1.610 |
P |
O3P |
1.517 |
1.610 |
P |
O5' |
1.596 |
1.610 |
O2P |
HOP2 |
0.950 |
0.968 |
O3P |
HOP3 |
0.950 |
0.967 |
O5' |
C5' |
1.407 |
1.429 |
C5' |
C4' |
1.502 |
1.530 |
C5' |
H5'1 |
1.101 |
1.090 |
C5' |
H5'2 |
1.100 |
1.090 |
C4' |
O4' |
1.444 |
1.438 |
C4' |
C3' |
1.517 |
1.541 |
C4' |
H4' |
1.099 |
1.090 |
O4' |
C1' |
1.433 |
1.444 |
C3' |
O3' |
1.458 |
1.428 |
C3' |
C2' |
1.518 |
1.549 |
C3' |
H3' |
1.099 |
1.090 |
O3' |
HO3' |
0.950 |
0.967 |
C2' |
O2' |
1.426 |
1.429 |
C2' |
C1' |
1.531 |
1.550 |
C2' |
H2' |
1.100 |
1.090 |
O2' |
HO2' |
0.950 |
0.966 |
C1' |
N9 |
1.469 |
1.465 |
C1' |
H1' |
1.100 |
1.090 |
N9 |
C8 |
1.398 |
1.364 |
N9 |
C4 |
1.313 |
1.367 |
C8 |
N7 |
1.347 |
1.302 |
C8 |
H8 |
1.080 |
1.080 |
N7 |
C5 |
1.359 |
1.354 |
C5 |
C6 |
1.389 |
1.417 |
C5 |
C4 |
1.394 |
1.398 |
C6 |
O6 |
1.265 |
1.220 |
C6 |
N1 |
1.322 |
1.352 |
N1 |
C2 |
1.407 |
1.357 |
N1 |
HN1 |
1.000 |
0.970 |
C2 |
N3 |
1.362 |
1.303 |
C2 |
H2 |
1.080 |
1.080 |
N3 |
C4 |
1.340 |
1.341 |
Bond Angles for IMP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1P |
P |
O2P |
107.7 |
109.5 |
O1P |
P |
O3P |
114.3 |
109.4 |
O1P |
P |
O5' |
109.5 |
109.5 |
O2P |
P |
O3P |
113.8 |
109.5 |
O2P |
P |
O5' |
106.3 |
109.5 |
P |
O2P |
HOP2 |
109.5 |
114.1 |
O3P |
P |
O5' |
104.9 |
109.5 |
P |
O3P |
HOP3 |
109.5 |
114.0 |
P |
O5' |
C5' |
119.6 |
123.0 |
O5' |
C5' |
C4' |
109.3 |
109.5 |
O5' |
C5' |
H5'1 |
109.5 |
109.4 |
O5' |
C5' |
H5'2 |
109.6 |
109.6 |
C4' |
C5' |
H5'1 |
109.5 |
109.5 |
C4' |
C5' |
H5'2 |
109.6 |
109.5 |
C5' |
C4' |
O4' |
113.3 |
109.9 |
C5' |
C4' |
C3' |
119.3 |
109.9 |
C5' |
C4' |
H4' |
98.0 |
109.8 |
H5'1 |
C5' |
H5'2 |
109.3 |
109.4 |
O4' |
C4' |
C3' |
105.7 |
107.3 |
O4' |
C4' |
H4' |
113.7 |
109.9 |
C4' |
O4' |
C1' |
106.5 |
106.9 |
C3' |
C4' |
H4' |
106.9 |
110.0 |
C4' |
C3' |
O3' |
112.4 |
110.5 |
C4' |
C3' |
C2' |
100.8 |
104.2 |
C4' |
C3' |
H3' |
114.9 |
110.5 |
O4' |
C1' |
C2' |
108.4 |
103.5 |
O4' |
C1' |
N9 |
106.5 |
110.6 |
O4' |
C1' |
H1' |
113.2 |
110.6 |
O3' |
C3' |
C2' |
114.1 |
110.5 |
O3' |
C3' |
H3' |
101.9 |
110.4 |
C3' |
O3' |
HO3' |
109.5 |
114.0 |
C2' |
C3' |
H3' |
113.3 |
110.6 |
C3' |
C2' |
O2' |
113.4 |
110.9 |
C3' |
C2' |
C1' |
103.1 |
102.1 |
C3' |
C2' |
H2' |
109.8 |
110.9 |
O2' |
C2' |
C1' |
105.0 |
110.9 |
O2' |
C2' |
H2' |
108.0 |
110.8 |
C2' |
O2' |
HO2' |
109.5 |
114.0 |
C1' |
C2' |
H2' |
117.6 |
110.9 |
C2' |
C1' |
N9 |
112.5 |
110.6 |
C2' |
C1' |
H1' |
107.3 |
110.6 |
N9 |
C1' |
H1' |
109.1 |
110.6 |
C1' |
N9 |
C8 |
133.4 |
126.2 |
C1' |
N9 |
C4 |
118.2 |
126.3 |
C8 |
N9 |
C4 |
108.4 |
107.5 |
N9 |
C8 |
N7 |
107.9 |
109.7 |
N9 |
C8 |
H8 |
126.1 |
125.1 |
N9 |
C4 |
C5 |
108.0 |
106.1 |
N9 |
C4 |
N3 |
132.0 |
134.3 |
N7 |
C8 |
H8 |
126.0 |
125.1 |
C8 |
N7 |
C5 |
107.7 |
109.3 |
N7 |
C5 |
C6 |
132.2 |
134.3 |
N7 |
C5 |
C4 |
107.9 |
107.3 |
C6 |
C5 |
C4 |
119.8 |
118.5 |
C5 |
C6 |
O6 |
120.3 |
120.9 |
C5 |
C6 |
N1 |
119.8 |
118.2 |
C5 |
C4 |
N3 |
120.0 |
119.5 |
O6 |
C6 |
N1 |
119.9 |
120.9 |
C6 |
N1 |
C2 |
119.9 |
120.4 |
C6 |
N1 |
HN1 |
120.0 |
119.8 |
C2 |
N1 |
HN1 |
120.0 |
119.8 |
N1 |
C2 |
N3 |
120.1 |
122.2 |
N1 |
C2 |
H2 |
119.9 |
118.9 |
N3 |
C2 |
H2 |
119.9 |
118.9 |
C2 |
N3 |
C4 |
120.0 |
121.3 |
Torsion Angles for IMP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2P |
P |
O1P |
O3P |
127.5 |
240.0 |
O2P |
P |
O1P |
O5' |
244.8 |
120.1 |
O1P |
P |
O2P |
HOP2 |
146.3 |
59.9 |
O3P |
P |
O1P |
O5' |
117.4 |
240.0 |
O1P |
P |
O3P |
HOP3 |
30.7 |
180.1 |
O1P |
P |
O5' |
C5' |
301.5 |
305.1 |
O1P |
P |
O2P |
O3P |
232.2 |
119.9 |
O1P |
P |
O2P |
O5' |
117.3 |
239.9 |
O3P |
P |
O2P |
O5' |
245.1 |
120.0 |
O2P |
P |
O3P |
HOP3 |
266.4 |
300.0 |
O2P |
P |
O5' |
C5' |
57.6 |
185.0 |
O1P |
P |
O3P |
O2P |
124.3 |
240.0 |
O1P |
P |
O3P |
O5' |
240.0 |
120.0 |
O2P |
P |
O3P |
O5' |
115.7 |
240.0 |
O3P |
P |
O2P |
HOP2 |
274.2 |
300.0 |
O3P |
P |
O5' |
C5' |
178.4 |
65.1 |
O1P |
P |
O5' |
O2P |
243.9 |
120.0 |
O1P |
P |
O5' |
O3P |
123.1 |
240.0 |
O2P |
P |
O5' |
O3P |
239.2 |
120.0 |
O5' |
P |
O2P |
HOP2 |
29.1 |
180.0 |
O5' |
P |
O3P |
HOP3 |
150.7 |
60.0 |
P |
O5' |
C5' |
C4' |
185.6 |
180.0 |
P |
O5' |
C5' |
H5'1 |
305.6 |
299.9 |
P |
O5' |
C5' |
H5'2 |
65.5 |
59.9 |
HOP2 |
O2P |
P |
O3P |
274.2 |
300.0 |
HOP2 |
O2P |
P |
O5' |
29.1 |
180.0 |
HOP3 |
O3P |
P |
O5' |
150.7 |
60.0 |
C4' |
C5' |
O5' |
H5'1 |
240.0 |
240.0 |
C4' |
C5' |
O5' |
H5'2 |
120.1 |
120.1 |
O5' |
C5' |
C4' |
O4' |
59.9 |
66.4 |
O5' |
C5' |
C4' |
C3' |
185.3 |
184.3 |
O5' |
C5' |
C4' |
H4' |
299.7 |
305.4 |
H5'1 |
C5' |
O5' |
H5'2 |
240.1 |
240.0 |
O5' |
C5' |
C4' |
H5'1 |
120.0 |
120.0 |
O5' |
C5' |
C4' |
H5'2 |
239.9 |
239.9 |
H5'1 |
C5' |
C4' |
H5'2 |
119.9 |
119.9 |
O4' |
C4' |
C5' |
C3' |
234.6 |
242.1 |
O4' |
C4' |
C5' |
H4' |
120.1 |
120.9 |
C5' |
C4' |
O4' |
C1' |
163.5 |
146.0 |
C3' |
C4' |
C5' |
H4' |
245.5 |
238.8 |
C5' |
C4' |
C3' |
O3' |
69.2 |
119.8 |
C5' |
C4' |
C3' |
C2' |
191.1 |
238.5 |
C5' |
C4' |
C3' |
H3' |
313.3 |
357.3 |
O5' |
C5' |
H5'1 |
C4' |
240.2 |
240.0 |
O5' |
C5' |
H5'1 |
H5'2 |
120.1 |
120.0 |
C4' |
C5' |
H5'1 |
H5'2 |
239.9 |
240.0 |
H5'1 |
C5' |
C4' |
O4' |
299.9 |
306.4 |
H5'1 |
C5' |
C4' |
C3' |
65.3 |
64.3 |
H5'1 |
C5' |
C4' |
H4' |
179.7 |
185.5 |
O5' |
C5' |
H5'2 |
C4' |
119.9 |
120.1 |
O5' |
C5' |
H5'2 |
H5'1 |
239.9 |
240.0 |
C4' |
C5' |
H5'2 |
H5'1 |
120.0 |
119.9 |
H5'2 |
C5' |
C4' |
O4' |
179.9 |
186.5 |
H5'2 |
C5' |
C4' |
C3' |
305.4 |
304.4 |
H5'2 |
C5' |
C4' |
H4' |
59.8 |
65.5 |
O4' |
C4' |
C5' |
H5'1 |
299.9 |
306.4 |
O4' |
C4' |
C5' |
H5'2 |
179.9 |
186.5 |
C5' |
C4' |
O4' |
C3' |
132.4 |
119.5 |
C5' |
C4' |
O4' |
H4' |
249.3 |
239.1 |
C3' |
C4' |
O4' |
H4' |
116.9 |
119.6 |
O4' |
C4' |
C3' |
O3' |
198.2 |
239.3 |
O4' |
C4' |
C3' |
C2' |
320.1 |
358.0 |
O4' |
C4' |
C3' |
H3' |
82.3 |
116.8 |
C4' |
O4' |
C1' |
C2' |
350.6 |
319.9 |
C4' |
O4' |
C1' |
N9 |
229.4 |
201.4 |
C4' |
O4' |
C1' |
H1' |
109.5 |
78.5 |
C3' |
C4' |
C5' |
H5'1 |
65.3 |
64.3 |
C3' |
C4' |
C5' |
H5'2 |
305.4 |
304.4 |
C5' |
C4' |
C3' |
O4' |
231.0 |
240.5 |
C5' |
C4' |
C3' |
H4' |
109.6 |
121.0 |
O4' |
C4' |
C3' |
H4' |
238.6 |
240.5 |
C3' |
C4' |
O4' |
C1' |
31.1 |
26.5 |
O3' |
C3' |
C4' |
C2' |
238.2 |
241.3 |
O3' |
C3' |
C4' |
H3' |
116.0 |
122.5 |
C4' |
C3' |
O3' |
HO3' |
135.6 |
180.0 |
C2' |
C3' |
C4' |
H3' |
237.8 |
241.2 |
C4' |
C3' |
C2' |
O2' |
279.6 |
220.9 |
C4' |
C3' |
C2' |
C1' |
32.6 |
339.1 |
C4' |
C3' |
C2' |
H2' |
158.7 |
97.3 |
H4' |
C4' |
C5' |
H5'1 |
179.7 |
185.5 |
H4' |
C4' |
C5' |
H5'2 |
59.8 |
65.5 |
C5' |
C4' |
H4' |
O4' |
119.9 |
120.9 |
C5' |
C4' |
H4' |
C3' |
236.1 |
238.9 |
O4' |
C4' |
H4' |
C3' |
116.2 |
118.0 |
H4' |
C4' |
O4' |
C1' |
274.3 |
266.9 |
H4' |
C4' |
C3' |
O3' |
319.6 |
358.8 |
H4' |
C4' |
C3' |
C2' |
81.4 |
117.5 |
H4' |
C4' |
C3' |
H3' |
203.7 |
236.3 |
C1' |
O4' |
C4' |
C3' |
31.1 |
26.5 |
C1' |
O4' |
C4' |
H4' |
274.3 |
266.9 |
C3' |
C2' |
C1' |
O4' |
344.4 |
37.1 |
O2' |
C2' |
C1' |
O4' |
103.4 |
155.2 |
O4' |
C1' |
C2' |
H2' |
223.5 |
278.8 |
C2' |
C1' |
O4' |
N9 |
121.2 |
118.5 |
C2' |
C1' |
O4' |
H1' |
241.1 |
241.5 |
N9 |
C1' |
O4' |
H1' |
119.9 |
122.9 |
O4' |
C1' |
N9 |
C8 |
73.7 |
23.7 |
O4' |
C1' |
N9 |
C4 |
252.7 |
203.3 |
O3' |
C3' |
C4' |
H4' |
319.6 |
358.8 |
C4' |
C3' |
O3' |
C2' |
113.9 |
114.8 |
C4' |
C3' |
O3' |
H3' |
236.4 |
237.5 |
C2' |
C3' |
O3' |
H3' |
122.5 |
122.7 |
O3' |
C3' |
C2' |
O2' |
40.3 |
339.6 |
O3' |
C3' |
C2' |
C1' |
153.3 |
97.8 |
O3' |
C3' |
C2' |
H2' |
279.4 |
216.0 |
C2' |
C3' |
C4' |
H4' |
81.4 |
117.5 |
C4' |
C3' |
C2' |
O3' |
239.4 |
241.3 |
C4' |
C3' |
C2' |
H3' |
123.3 |
118.7 |
O4' |
C1' |
C2' |
C3' |
344.4 |
37.1 |
O3' |
C3' |
C2' |
H3' |
244.0 |
237.4 |
C2' |
C3' |
O3' |
HO3' |
21.6 |
65.2 |
O2' |
C2' |
C3' |
C1' |
247.0 |
241.8 |
O2' |
C2' |
C3' |
H2' |
120.9 |
123.6 |
C3' |
C2' |
O2' |
HO2' |
14.6 |
298.5 |
C1' |
C2' |
C3' |
H2' |
233.9 |
241.8 |
C3' |
C2' |
C1' |
N9 |
101.8 |
155.6 |
C3' |
C2' |
C1' |
H1' |
221.8 |
278.5 |
H3' |
C3' |
C4' |
H4' |
203.7 |
236.3 |
C4' |
C3' |
H3' |
O3' |
121.8 |
122.5 |
C4' |
C3' |
H3' |
C2' |
244.8 |
245.2 |
O3' |
C3' |
H3' |
C2' |
123.0 |
122.7 |
H3' |
C3' |
O3' |
HO3' |
259.2 |
302.5 |
H3' |
C3' |
C2' |
O2' |
156.3 |
102.2 |
H3' |
C3' |
C2' |
C1' |
269.3 |
220.4 |
H3' |
C3' |
C2' |
H2' |
35.4 |
338.6 |
HO3' |
O3' |
C3' |
C2' |
21.6 |
65.2 |
HO3' |
O3' |
C3' |
H3' |
259.2 |
302.5 |
O4' |
C1' |
C2' |
O2' |
103.4 |
155.2 |
O2' |
C2' |
C3' |
H3' |
156.3 |
102.2 |
C3' |
C2' |
O2' |
C1' |
111.8 |
112.7 |
C3' |
C2' |
O2' |
H2' |
238.1 |
236.3 |
C1' |
C2' |
O2' |
H2' |
126.3 |
123.7 |
O2' |
C2' |
C1' |
N9 |
220.8 |
273.7 |
O2' |
C2' |
C1' |
H1' |
340.9 |
36.7 |
O4' |
C1' |
C2' |
N9 |
242.6 |
241.5 |
O4' |
C1' |
C2' |
H1' |
122.5 |
118.5 |
C1' |
C2' |
C3' |
H3' |
269.3 |
220.4 |
C3' |
C2' |
C1' |
O2' |
241.0 |
241.8 |
C3' |
C2' |
C1' |
H2' |
120.9 |
118.2 |
O2' |
C2' |
C1' |
H2' |
239.9 |
236.4 |
C1' |
C2' |
O2' |
HO2' |
262.8 |
185.9 |
N9 |
C1' |
C2' |
H1' |
240.0 |
237.1 |
C2' |
C1' |
N9 |
C8 |
315.1 |
269.5 |
C2' |
C1' |
N9 |
C4 |
134.1 |
89.2 |
H2' |
C2' |
C3' |
H3' |
35.4 |
338.6 |
C3' |
C2' |
H2' |
O2' |
124.1 |
123.6 |
C3' |
C2' |
H2' |
C1' |
242.7 |
247.3 |
O2' |
C2' |
H2' |
C1' |
118.5 |
123.7 |
H2' |
C2' |
O2' |
HO2' |
136.5 |
62.2 |
H2' |
C2' |
C1' |
N9 |
340.9 |
37.4 |
H2' |
C2' |
C1' |
H1' |
100.9 |
160.3 |
HO2' |
O2' |
C2' |
C1' |
262.8 |
185.9 |
HO2' |
O2' |
C2' |
H2' |
136.5 |
62.2 |
O4' |
C1' |
N9 |
C2' |
118.6 |
114.1 |
O4' |
C1' |
N9 |
H1' |
237.5 |
237.1 |
N9 |
C1' |
C2' |
H2' |
340.9 |
37.4 |
C2' |
C1' |
N9 |
H1' |
118.9 |
122.9 |
C8 |
N9 |
C1' |
C4 |
181.0 |
180.4 |
C1' |
N9 |
C8 |
N7 |
180.5 |
180.0 |
C1' |
N9 |
C8 |
H8 |
0.5 |
359.9 |
C1' |
N9 |
C4 |
C5 |
177.9 |
179.9 |
C1' |
N9 |
C4 |
N3 |
359.9 |
0.9 |
O4' |
C1' |
H1' |
C2' |
240.5 |
245.9 |
O4' |
C1' |
H1' |
N9 |
118.4 |
122.9 |
H1' |
C1' |
C2' |
H2' |
100.9 |
160.3 |
C2' |
C1' |
H1' |
N9 |
237.9 |
237.1 |
H1' |
C1' |
N9 |
C8 |
196.2 |
146.6 |
H1' |
C1' |
N9 |
C4 |
15.2 |
326.2 |
C8 |
N9 |
C1' |
H1' |
196.2 |
146.6 |
C1' |
N9 |
C8 |
C4 |
179.1 |
179.7 |
C8 |
N9 |
C4 |
C5 |
357.2 |
359.6 |
C8 |
N9 |
C4 |
N3 |
179.2 |
180.5 |
N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
N9 |
C8 |
N7 |
C5 |
0.7 |
0.0 |
C4 |
N9 |
C1' |
H1' |
15.2 |
326.2 |
C1' |
N9 |
C4 |
C8 |
180.7 |
180.3 |
C4 |
N9 |
C8 |
N7 |
1.4 |
0.3 |
C4 |
N9 |
C8 |
H8 |
181.4 |
180.2 |
N7 |
C5 |
C4 |
N9 |
3.3 |
0.4 |
C6 |
C5 |
C4 |
N9 |
180.2 |
180.2 |
C5 |
C4 |
N9 |
N3 |
178.0 |
179.0 |
C2 |
N3 |
C4 |
N9 |
177.9 |
179.6 |
N7 |
C8 |
N9 |
C4 |
1.4 |
0.3 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
C8 |
N7 |
C5 |
C6 |
181.2 |
180.0 |
C8 |
N7 |
C5 |
C4 |
357.6 |
359.7 |
H8 |
C8 |
N9 |
C4 |
181.4 |
180.2 |
N9 |
C8 |
H8 |
N7 |
180.0 |
180.1 |
H8 |
C8 |
N7 |
C5 |
180.7 |
180.1 |
N9 |
C4 |
C5 |
N7 |
3.3 |
0.4 |
C5 |
N7 |
C8 |
H8 |
180.7 |
180.1 |
C6 |
C5 |
N7 |
C4 |
183.6 |
180.3 |
N7 |
C5 |
C6 |
O6 |
356.3 |
359.9 |
N7 |
C5 |
C6 |
N1 |
174.5 |
180.0 |
N7 |
C5 |
C4 |
N3 |
181.6 |
179.6 |
N9 |
C4 |
C5 |
C6 |
180.2 |
180.2 |
N7 |
C5 |
C6 |
C4 |
176.0 |
179.7 |
C6 |
C5 |
C4 |
N3 |
358.5 |
359.4 |
O6 |
C6 |
C5 |
N1 |
181.8 |
179.9 |
C5 |
C6 |
N1 |
C2 |
5.8 |
359.9 |
C5 |
C6 |
N1 |
HN1 |
185.8 |
180.0 |
N9 |
C4 |
C5 |
N3 |
181.7 |
180.8 |
N7 |
C5 |
C4 |
C6 |
183.1 |
180.3 |
C4 |
C5 |
C6 |
O6 |
180.2 |
180.3 |
C4 |
C5 |
C6 |
N1 |
358.5 |
0.4 |
C2 |
N3 |
C4 |
C5 |
0.1 |
0.6 |
O6 |
C6 |
C5 |
C4 |
180.2 |
180.3 |
C5 |
C6 |
O6 |
N1 |
178.2 |
180.1 |
O6 |
C6 |
N1 |
C2 |
184.1 |
180.0 |
O6 |
C6 |
N1 |
HN1 |
4.0 |
0.1 |
N1 |
C6 |
C5 |
C4 |
358.5 |
0.4 |
C5 |
C6 |
N1 |
O6 |
181.7 |
179.9 |
C2 |
N1 |
C6 |
HN1 |
180.0 |
179.9 |
C6 |
N1 |
C2 |
N3 |
352.8 |
0.1 |
C6 |
N1 |
C2 |
H2 |
172.8 |
180.0 |
C6 |
N1 |
C2 |
HN1 |
180.0 |
180.1 |
N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
N1 |
C2 |
N3 |
C4 |
4.2 |
359.6 |
C6 |
N1 |
HN1 |
C2 |
180.0 |
179.9 |
HN1 |
N1 |
C2 |
N3 |
172.8 |
180.0 |
HN1 |
N1 |
C2 |
H2 |
352.8 |
359.9 |
N9 |
C4 |
N3 |
C2 |
177.9 |
179.6 |
C5 |
C4 |
N3 |
C2 |
0.1 |
0.6 |
N3 |
C2 |
N1 |
HN1 |
172.8 |
180.0 |
N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
H2 |
C2 |
N1 |
HN1 |
352.8 |
359.9 |
N1 |
C2 |
H2 |
N3 |
180.0 |
180.1 |
H2 |
C2 |
N3 |
C4 |
184.1 |
179.7 |
N9 |
C4 |
N3 |
C5 |
177.8 |
178.9 |
C4 |
N3 |
C2 |
H2 |
184.1 |
179.7 |