PDB Chemical Component IMP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IMP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.494 1.480
P O2P 1.551 1.610
P O3P 1.517 1.610
P O5' 1.596 1.610
O2P HOP2 0.950 0.968
O3P HOP3 0.950 0.967
O5' C5' 1.407 1.429
C5' C4' 1.502 1.530
C5' H5'1 1.101 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.444 1.438
C4' C3' 1.517 1.541
C4' H4' 1.099 1.090
O4' C1' 1.433 1.444
C3' O3' 1.458 1.428
C3' C2' 1.518 1.549
C3' H3' 1.099 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.426 1.429
C2' C1' 1.531 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.966
C1' N9 1.469 1.465
C1' H1' 1.100 1.090
N9 C8 1.398 1.364
N9 C4 1.313 1.367
C8 N7 1.347 1.302
C8 H8 1.080 1.080
N7 C5 1.359 1.354
C5 C6 1.389 1.417
C5 C4 1.394 1.398
C6 O6 1.265 1.220
C6 N1 1.322 1.352
N1 C2 1.407 1.357
N1 HN1 1.000 0.970
C2 N3 1.362 1.303
C2 H2 1.080 1.080
N3 C4 1.340 1.341

Bond Angles for IMP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 107.7 109.5
O1P P O3P 114.3 109.4
O1P P O5' 109.5 109.5
O2P P O3P 113.8 109.5
O2P P O5' 106.3 109.5
P O2P HOP2 109.5 114.1
O3P P O5' 104.9 109.5
P O3P HOP3 109.5 114.0
P O5' C5' 119.6 123.0
O5' C5' C4' 109.3 109.5
O5' C5' H5'1 109.5 109.4
O5' C5' H5'2 109.6 109.6
C4' C5' H5'1 109.5 109.5
C4' C5' H5'2 109.6 109.5
C5' C4' O4' 113.3 109.9
C5' C4' C3' 119.3 109.9
C5' C4' H4' 98.0 109.8
H5'1 C5' H5'2 109.3 109.4
O4' C4' C3' 105.7 107.3
O4' C4' H4' 113.7 109.9
C4' O4' C1' 106.5 106.9
C3' C4' H4' 106.9 110.0
C4' C3' O3' 112.4 110.5
C4' C3' C2' 100.8 104.2
C4' C3' H3' 114.9 110.5
O4' C1' C2' 108.4 103.5
O4' C1' N9 106.5 110.6
O4' C1' H1' 113.2 110.6
O3' C3' C2' 114.1 110.5
O3' C3' H3' 101.9 110.4
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 113.3 110.6
C3' C2' O2' 113.4 110.9
C3' C2' C1' 103.1 102.1
C3' C2' H2' 109.8 110.9
O2' C2' C1' 105.0 110.9
O2' C2' H2' 108.0 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 117.6 110.9
C2' C1' N9 112.5 110.6
C2' C1' H1' 107.3 110.6
N9 C1' H1' 109.1 110.6
C1' N9 C8 133.4 126.2
C1' N9 C4 118.2 126.3
C8 N9 C4 108.4 107.5
N9 C8 N7 107.9 109.7
N9 C8 H8 126.1 125.1
N9 C4 C5 108.0 106.1
N9 C4 N3 132.0 134.3
N7 C8 H8 126.0 125.1
C8 N7 C5 107.7 109.3
N7 C5 C6 132.2 134.3
N7 C5 C4 107.9 107.3
C6 C5 C4 119.8 118.5
C5 C6 O6 120.3 120.9
C5 C6 N1 119.8 118.2
C5 C4 N3 120.0 119.5
O6 C6 N1 119.9 120.9
C6 N1 C2 119.9 120.4
C6 N1 HN1 120.0 119.8
C2 N1 HN1 120.0 119.8
N1 C2 N3 120.1 122.2
N1 C2 H2 119.9 118.9
N3 C2 H2 119.9 118.9
C2 N3 C4 120.0 121.3

Torsion Angles for IMP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 127.5 240.0
O2P P O1P O5' 244.8 120.1
O1P P O2P HOP2 146.3 59.9
O3P P O1P O5' 117.4 240.0
O1P P O3P HOP3 30.7 180.1
O1P P O5' C5' 301.5 305.1
O1P P O2P O3P 232.2 119.9
O1P P O2P O5' 117.3 239.9
O3P P O2P O5' 245.1 120.0
O2P P O3P HOP3 266.4 300.0
O2P P O5' C5' 57.6 185.0
O1P P O3P O2P 124.3 240.0
O1P P O3P O5' 240.0 120.0
O2P P O3P O5' 115.7 240.0
O3P P O2P HOP2 274.2 300.0
O3P P O5' C5' 178.4 65.1
O1P P O5' O2P 243.9 120.0
O1P P O5' O3P 123.1 240.0
O2P P O5' O3P 239.2 120.0
O5' P O2P HOP2 29.1 180.0
O5' P O3P HOP3 150.7 60.0
P O5' C5' C4' 185.6 180.0
P O5' C5' H5'1 305.6 299.9
P O5' C5' H5'2 65.5 59.9
HOP2 O2P P O3P 274.2 300.0
HOP2 O2P P O5' 29.1 180.0
HOP3 O3P P O5' 150.7 60.0
C4' C5' O5' H5'1 240.0 240.0
C4' C5' O5' H5'2 120.1 120.1
O5' C5' C4' O4' 59.9 66.4
O5' C5' C4' C3' 185.3 184.3
O5' C5' C4' H4' 299.7 305.4
H5'1 C5' O5' H5'2 240.1 240.0
O5' C5' C4' H5'1 120.0 120.0
O5' C5' C4' H5'2 239.9 239.9
H5'1 C5' C4' H5'2 119.9 119.9
O4' C4' C5' C3' 234.6 242.1
O4' C4' C5' H4' 120.1 120.9
C5' C4' O4' C1' 163.5 146.0
C3' C4' C5' H4' 245.5 238.8
C5' C4' C3' O3' 69.2 119.8
C5' C4' C3' C2' 191.1 238.5
C5' C4' C3' H3' 313.3 357.3
O5' C5' H5'1 C4' 240.2 240.0
O5' C5' H5'1 H5'2 120.1 120.0
C4' C5' H5'1 H5'2 239.9 240.0
H5'1 C5' C4' O4' 299.9 306.4
H5'1 C5' C4' C3' 65.3 64.3
H5'1 C5' C4' H4' 179.7 185.5
O5' C5' H5'2 C4' 119.9 120.1
O5' C5' H5'2 H5'1 239.9 240.0
C4' C5' H5'2 H5'1 120.0 119.9
H5'2 C5' C4' O4' 179.9 186.5
H5'2 C5' C4' C3' 305.4 304.4
H5'2 C5' C4' H4' 59.8 65.5
O4' C4' C5' H5'1 299.9 306.4
O4' C4' C5' H5'2 179.9 186.5
C5' C4' O4' C3' 132.4 119.5
C5' C4' O4' H4' 249.3 239.1
C3' C4' O4' H4' 116.9 119.6
O4' C4' C3' O3' 198.2 239.3
O4' C4' C3' C2' 320.1 358.0
O4' C4' C3' H3' 82.3 116.8
C4' O4' C1' C2' 350.6 319.9
C4' O4' C1' N9 229.4 201.4
C4' O4' C1' H1' 109.5 78.5
C3' C4' C5' H5'1 65.3 64.3
C3' C4' C5' H5'2 305.4 304.4
C5' C4' C3' O4' 231.0 240.5
C5' C4' C3' H4' 109.6 121.0
O4' C4' C3' H4' 238.6 240.5
C3' C4' O4' C1' 31.1 26.5
O3' C3' C4' C2' 238.2 241.3
O3' C3' C4' H3' 116.0 122.5
C4' C3' O3' HO3' 135.6 180.0
C2' C3' C4' H3' 237.8 241.2
C4' C3' C2' O2' 279.6 220.9
C4' C3' C2' C1' 32.6 339.1
C4' C3' C2' H2' 158.7 97.3
H4' C4' C5' H5'1 179.7 185.5
H4' C4' C5' H5'2 59.8 65.5
C5' C4' H4' O4' 119.9 120.9
C5' C4' H4' C3' 236.1 238.9
O4' C4' H4' C3' 116.2 118.0
H4' C4' O4' C1' 274.3 266.9
H4' C4' C3' O3' 319.6 358.8
H4' C4' C3' C2' 81.4 117.5
H4' C4' C3' H3' 203.7 236.3
C1' O4' C4' C3' 31.1 26.5
C1' O4' C4' H4' 274.3 266.9
C3' C2' C1' O4' 344.4 37.1
O2' C2' C1' O4' 103.4 155.2
O4' C1' C2' H2' 223.5 278.8
C2' C1' O4' N9 121.2 118.5
C2' C1' O4' H1' 241.1 241.5
N9 C1' O4' H1' 119.9 122.9
O4' C1' N9 C8 73.7 23.7
O4' C1' N9 C4 252.7 203.3
O3' C3' C4' H4' 319.6 358.8
C4' C3' O3' C2' 113.9 114.8
C4' C3' O3' H3' 236.4 237.5
C2' C3' O3' H3' 122.5 122.7
O3' C3' C2' O2' 40.3 339.6
O3' C3' C2' C1' 153.3 97.8
O3' C3' C2' H2' 279.4 216.0
C2' C3' C4' H4' 81.4 117.5
C4' C3' C2' O3' 239.4 241.3
C4' C3' C2' H3' 123.3 118.7
O4' C1' C2' C3' 344.4 37.1
O3' C3' C2' H3' 244.0 237.4
C2' C3' O3' HO3' 21.6 65.2
O2' C2' C3' C1' 247.0 241.8
O2' C2' C3' H2' 120.9 123.6
C3' C2' O2' HO2' 14.6 298.5
C1' C2' C3' H2' 233.9 241.8
C3' C2' C1' N9 101.8 155.6
C3' C2' C1' H1' 221.8 278.5
H3' C3' C4' H4' 203.7 236.3
C4' C3' H3' O3' 121.8 122.5
C4' C3' H3' C2' 244.8 245.2
O3' C3' H3' C2' 123.0 122.7
H3' C3' O3' HO3' 259.2 302.5
H3' C3' C2' O2' 156.3 102.2
H3' C3' C2' C1' 269.3 220.4
H3' C3' C2' H2' 35.4 338.6
HO3' O3' C3' C2' 21.6 65.2
HO3' O3' C3' H3' 259.2 302.5
O4' C1' C2' O2' 103.4 155.2
O2' C2' C3' H3' 156.3 102.2
C3' C2' O2' C1' 111.8 112.7
C3' C2' O2' H2' 238.1 236.3
C1' C2' O2' H2' 126.3 123.7
O2' C2' C1' N9 220.8 273.7
O2' C2' C1' H1' 340.9 36.7
O4' C1' C2' N9 242.6 241.5
O4' C1' C2' H1' 122.5 118.5
C1' C2' C3' H3' 269.3 220.4
C3' C2' C1' O2' 241.0 241.8
C3' C2' C1' H2' 120.9 118.2
O2' C2' C1' H2' 239.9 236.4
C1' C2' O2' HO2' 262.8 185.9
N9 C1' C2' H1' 240.0 237.1
C2' C1' N9 C8 315.1 269.5
C2' C1' N9 C4 134.1 89.2
H2' C2' C3' H3' 35.4 338.6
C3' C2' H2' O2' 124.1 123.6
C3' C2' H2' C1' 242.7 247.3
O2' C2' H2' C1' 118.5 123.7
H2' C2' O2' HO2' 136.5 62.2
H2' C2' C1' N9 340.9 37.4
H2' C2' C1' H1' 100.9 160.3
HO2' O2' C2' C1' 262.8 185.9
HO2' O2' C2' H2' 136.5 62.2
O4' C1' N9 C2' 118.6 114.1
O4' C1' N9 H1' 237.5 237.1
N9 C1' C2' H2' 340.9 37.4
C2' C1' N9 H1' 118.9 122.9
C8 N9 C1' C4 181.0 180.4
C1' N9 C8 N7 180.5 180.0
C1' N9 C8 H8 0.5 359.9
C1' N9 C4 C5 177.9 179.9
C1' N9 C4 N3 359.9 0.9
O4' C1' H1' C2' 240.5 245.9
O4' C1' H1' N9 118.4 122.9
H1' C1' C2' H2' 100.9 160.3
C2' C1' H1' N9 237.9 237.1
H1' C1' N9 C8 196.2 146.6
H1' C1' N9 C4 15.2 326.2
C8 N9 C1' H1' 196.2 146.6
C1' N9 C8 C4 179.1 179.7
C8 N9 C4 C5 357.2 359.6
C8 N9 C4 N3 179.2 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.7 0.0
C4 N9 C1' H1' 15.2 326.2
C1' N9 C4 C8 180.7 180.3
C4 N9 C8 N7 1.4 0.3
C4 N9 C8 H8 181.4 180.2
N7 C5 C4 N9 3.3 0.4
C6 C5 C4 N9 180.2 180.2
C5 C4 N9 N3 178.0 179.0
C2 N3 C4 N9 177.9 179.6
N7 C8 N9 C4 1.4 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 181.2 180.0
C8 N7 C5 C4 357.6 359.7
H8 C8 N9 C4 181.4 180.2
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 180.7 180.1
N9 C4 C5 N7 3.3 0.4
C5 N7 C8 H8 180.7 180.1
C6 C5 N7 C4 183.6 180.3
N7 C5 C6 O6 356.3 359.9
N7 C5 C6 N1 174.5 180.0
N7 C5 C4 N3 181.6 179.6
N9 C4 C5 C6 180.2 180.2
N7 C5 C6 C4 176.0 179.7
C6 C5 C4 N3 358.5 359.4
O6 C6 C5 N1 181.8 179.9
C5 C6 N1 C2 5.8 359.9
C5 C6 N1 HN1 185.8 180.0
N9 C4 C5 N3 181.7 180.8
N7 C5 C4 C6 183.1 180.3
C4 C5 C6 O6 180.2 180.3
C4 C5 C6 N1 358.5 0.4
C2 N3 C4 C5 0.1 0.6
O6 C6 C5 C4 180.2 180.3
C5 C6 O6 N1 178.2 180.1
O6 C6 N1 C2 184.1 180.0
O6 C6 N1 HN1 4.0 0.1
N1 C6 C5 C4 358.5 0.4
C5 C6 N1 O6 181.7 179.9
C2 N1 C6 HN1 180.0 179.9
C6 N1 C2 N3 352.8 0.1
C6 N1 C2 H2 172.8 180.0
C6 N1 C2 HN1 180.0 180.1
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 4.2 359.6
C6 N1 HN1 C2 180.0 179.9
HN1 N1 C2 N3 172.8 180.0
HN1 N1 C2 H2 352.8 359.9
N9 C4 N3 C2 177.9 179.6
C5 C4 N3 C2 0.1 0.6
N3 C2 N1 HN1 172.8 180.0
N1 C2 N3 H2 180.0 179.9
H2 C2 N1 HN1 352.8 359.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 184.1 179.7
N9 C4 N3 C5 177.8 178.9
C4 N3 C2 H2 184.1 179.7