PDB Chemical Component IML
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IML
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.476 |
1.469 |
| N |
CN |
1.505 |
1.468 |
| N |
H |
1.020 |
1.009 |
| CA |
C |
1.544 |
1.507 |
| CA |
CB |
1.587 |
1.529 |
| CA |
HA |
1.115 |
1.089 |
| C |
O |
1.240 |
1.208 |
| C |
OXT |
1.338 |
1.341 |
| OXT |
HXT |
0.950 |
0.967 |
| CB |
CG2 |
1.532 |
1.530 |
| CB |
CG1 |
1.532 |
1.529 |
| CB |
HB |
1.116 |
1.090 |
| CN |
HN1 |
1.115 |
1.090 |
| CN |
HN2 |
1.115 |
1.090 |
| CN |
HN3 |
1.116 |
1.090 |
| CG2 |
HG21 |
1.116 |
1.089 |
| CG2 |
HG22 |
1.115 |
1.089 |
| CG2 |
HG23 |
1.115 |
1.090 |
| CG1 |
CD1 |
1.527 |
1.530 |
| CG1 |
HG12 |
1.115 |
1.089 |
| CG1 |
HG13 |
1.115 |
1.091 |
| CD1 |
HD11 |
1.114 |
1.090 |
| CD1 |
HD12 |
1.114 |
1.090 |
| CD1 |
HD13 |
1.114 |
1.089 |
Bond Angles for IML
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CN |
120.1 |
106.7 |
| CA |
N |
H |
108.4 |
106.7 |
| N |
CA |
C |
105.7 |
109.5 |
| N |
CA |
CB |
114.7 |
109.5 |
| N |
CA |
HA |
107.8 |
109.4 |
| CN |
N |
H |
108.4 |
106.7 |
| N |
CN |
HN1 |
120.1 |
109.5 |
| N |
CN |
HN2 |
108.4 |
109.5 |
| N |
CN |
HN3 |
108.4 |
109.5 |
| C |
CA |
CB |
107.1 |
109.5 |
| C |
CA |
HA |
115.4 |
109.5 |
| CA |
C |
O |
120.0 |
120.0 |
| CA |
C |
OXT |
120.8 |
120.0 |
| CB |
CA |
HA |
106.4 |
109.5 |
| CA |
CB |
CG2 |
105.8 |
109.5 |
| CA |
CB |
CG1 |
114.9 |
109.5 |
| CA |
CB |
HB |
108.5 |
109.5 |
| O |
C |
OXT |
119.2 |
120.0 |
| C |
OXT |
HXT |
120.8 |
120.1 |
| CG2 |
CB |
CG1 |
109.9 |
109.5 |
| CG2 |
CB |
HB |
113.7 |
109.4 |
| CB |
CG2 |
HG21 |
105.8 |
109.5 |
| CB |
CG2 |
HG22 |
113.6 |
109.5 |
| CB |
CG2 |
HG23 |
113.6 |
109.4 |
| CG1 |
CB |
HB |
104.3 |
109.4 |
| CB |
CG1 |
CD1 |
112.4 |
109.5 |
| CB |
CG1 |
HG12 |
111.1 |
109.5 |
| CB |
CG1 |
HG13 |
111.1 |
109.4 |
| HN1 |
CN |
HN2 |
108.4 |
109.5 |
| HN1 |
CN |
HN3 |
108.4 |
109.5 |
| HN2 |
CN |
HN3 |
101.5 |
109.4 |
| HG21 |
CG2 |
HG22 |
113.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
113.6 |
109.5 |
| HG22 |
CG2 |
HG23 |
96.9 |
109.5 |
| CD1 |
CG1 |
HG12 |
111.1 |
109.5 |
| CD1 |
CG1 |
HG13 |
111.2 |
109.4 |
| CG1 |
CD1 |
HD11 |
112.4 |
109.5 |
| CG1 |
CD1 |
HD12 |
111.1 |
109.4 |
| CG1 |
CD1 |
HD13 |
111.1 |
109.5 |
| HG12 |
CG1 |
HG13 |
99.2 |
109.4 |
| HD11 |
CD1 |
HD12 |
111.1 |
109.5 |
| HD11 |
CD1 |
HD13 |
111.2 |
109.4 |
| HD12 |
CD1 |
HD13 |
99.2 |
109.5 |
Torsion Angles for IML
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CN |
N |
CA |
H |
125.2 |
246.2 |
| CA |
N |
CN |
HN1 |
180.0 |
180.0 |
| CA |
N |
CN |
HN2 |
305.3 |
300.0 |
| CA |
N |
CN |
HN3 |
54.7 |
60.0 |
| C |
CA |
N |
CB |
117.7 |
120.0 |
| C |
CA |
N |
HA |
236.1 |
240.0 |
| N |
CA |
C |
O |
284.4 |
150.0 |
| N |
CA |
C |
OXT |
103.5 |
330.0 |
| CB |
CA |
N |
HA |
118.4 |
120.0 |
| N |
CA |
CB |
CG2 |
188.2 |
60.0 |
| N |
CA |
CB |
CG1 |
309.6 |
180.1 |
| N |
CA |
CB |
HB |
65.9 |
300.0 |
| CA |
N |
CN |
H |
234.8 |
113.8 |
| CN |
N |
CA |
C |
74.3 |
270.0 |
| CN |
N |
CA |
CB |
316.6 |
150.0 |
| CN |
N |
CA |
HA |
198.2 |
30.0 |
| HN1 |
CN |
N |
HN2 |
234.7 |
240.0 |
| HN1 |
CN |
N |
HN3 |
125.3 |
120.0 |
| HN2 |
CN |
N |
HN3 |
250.6 |
240.0 |
| CA |
N |
H |
CN |
131.9 |
246.2 |
| H |
N |
CA |
C |
309.1 |
23.8 |
| H |
N |
CA |
CB |
191.3 |
263.8 |
| H |
N |
CA |
HA |
73.0 |
143.8 |
| H |
N |
CN |
HN1 |
305.2 |
66.2 |
| H |
N |
CN |
HN2 |
70.5 |
186.2 |
| H |
N |
CN |
HN3 |
180.0 |
306.2 |
| C |
CA |
N |
CN |
74.3 |
270.0 |
| C |
CA |
N |
H |
309.1 |
23.8 |
| N |
CA |
C |
CB |
237.2 |
240.0 |
| N |
CA |
C |
HA |
119.0 |
120.0 |
| CB |
CA |
C |
HA |
241.8 |
240.0 |
| C |
CA |
CB |
CG2 |
71.3 |
300.0 |
| C |
CA |
CB |
CG1 |
192.7 |
60.1 |
| C |
CA |
CB |
HB |
309.0 |
180.0 |
| O |
C |
CA |
OXT |
180.9 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
CN |
316.6 |
150.0 |
| CB |
CA |
N |
H |
191.3 |
263.8 |
| N |
CA |
CB |
C |
116.9 |
120.0 |
| N |
CA |
CB |
HA |
240.9 |
240.0 |
| C |
CA |
CB |
HA |
123.9 |
120.0 |
| CB |
CA |
C |
O |
47.2 |
270.0 |
| CB |
CA |
C |
OXT |
226.3 |
90.0 |
| CG2 |
CB |
CA |
CG1 |
238.6 |
240.0 |
| CG2 |
CB |
CA |
HB |
122.3 |
120.0 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
305.2 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
54.8 |
300.0 |
| CG1 |
CB |
CA |
HB |
243.7 |
240.1 |
| CA |
CB |
CG1 |
CD1 |
307.6 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
72.9 |
59.9 |
| CA |
CB |
CG1 |
HG13 |
182.3 |
300.0 |
| HA |
CA |
N |
CN |
198.2 |
30.0 |
| HA |
CA |
N |
H |
73.0 |
143.8 |
| N |
CA |
HA |
C |
242.2 |
240.0 |
| N |
CA |
HA |
CB |
123.6 |
120.0 |
| C |
CA |
HA |
CB |
241.4 |
240.0 |
| HA |
CA |
C |
O |
165.4 |
30.0 |
| HA |
CA |
C |
OXT |
344.5 |
210.0 |
| HA |
CA |
CB |
CG2 |
307.4 |
180.0 |
| HA |
CA |
CB |
CG1 |
68.8 |
300.0 |
| HA |
CA |
CB |
HB |
185.1 |
60.0 |
| O |
C |
CA |
CB |
47.2 |
270.0 |
| O |
C |
CA |
HA |
165.4 |
30.0 |
| CA |
C |
O |
OXT |
179.1 |
180.0 |
| O |
C |
OXT |
HXT |
359.1 |
0.0 |
| OXT |
C |
CA |
CB |
226.3 |
90.0 |
| OXT |
C |
CA |
HA |
344.5 |
210.0 |
| CA |
C |
OXT |
O |
180.9 |
180.0 |
| CG2 |
CB |
CA |
HA |
307.4 |
180.0 |
| CA |
CB |
CG2 |
CG1 |
124.6 |
120.1 |
| CA |
CB |
CG2 |
HB |
241.0 |
240.0 |
| CG1 |
CB |
CG2 |
HB |
116.4 |
119.9 |
| CG2 |
CB |
CG1 |
CD1 |
66.8 |
300.1 |
| CG2 |
CB |
CG1 |
HG12 |
192.1 |
180.0 |
| CG2 |
CB |
CG1 |
HG13 |
301.5 |
60.0 |
| HG21 |
CG2 |
CB |
HG22 |
234.8 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
125.3 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
250.5 |
240.0 |
| CG1 |
CB |
CA |
HA |
68.8 |
300.0 |
| CA |
CB |
CG1 |
CG2 |
240.8 |
239.9 |
| CA |
CB |
CG1 |
HB |
118.7 |
120.0 |
| CG2 |
CB |
CG1 |
HB |
237.8 |
240.1 |
| CG1 |
CB |
CG2 |
HG21 |
55.4 |
299.9 |
| CG1 |
CB |
CG2 |
HG22 |
180.6 |
59.9 |
| CG1 |
CB |
CG2 |
HG23 |
290.1 |
180.0 |
| CD1 |
CG1 |
CB |
HG12 |
234.7 |
120.1 |
| CD1 |
CG1 |
CB |
HG13 |
125.3 |
240.0 |
| CB |
CG1 |
CD1 |
HD11 |
180.0 |
179.9 |
| CB |
CG1 |
CD1 |
HD12 |
305.2 |
300.0 |
| CB |
CG1 |
CD1 |
HD13 |
54.7 |
59.9 |
| HG12 |
CG1 |
CB |
HG13 |
250.6 |
120.0 |
| HB |
CB |
CA |
HA |
185.1 |
60.0 |
| CA |
CB |
HB |
CG2 |
117.4 |
120.1 |
| CA |
CB |
HB |
CG1 |
237.0 |
240.0 |
| CG2 |
CB |
HB |
CG1 |
119.6 |
119.9 |
| HB |
CB |
CG2 |
HG21 |
299.0 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
64.2 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
173.7 |
60.1 |
| HB |
CB |
CG1 |
CD1 |
188.9 |
60.0 |
| HB |
CB |
CG1 |
HG12 |
314.2 |
299.9 |
| HB |
CB |
CG1 |
HG13 |
63.6 |
180.0 |
| HN1 |
CN |
N |
H |
305.2 |
66.2 |
| N |
CN |
HN1 |
HN2 |
125.3 |
120.0 |
| N |
CN |
HN1 |
HN3 |
234.7 |
240.0 |
| HN2 |
CN |
HN1 |
HN3 |
109.4 |
120.0 |
| HN2 |
CN |
N |
H |
70.5 |
186.2 |
| N |
CN |
HN2 |
HN1 |
228.1 |
240.0 |
| N |
CN |
HN2 |
HN3 |
114.1 |
120.0 |
| HN1 |
CN |
HN2 |
HN3 |
246.0 |
240.0 |
| HN3 |
CN |
N |
H |
180.0 |
306.2 |
| N |
CN |
HN3 |
HN1 |
131.9 |
120.0 |
| N |
CN |
HN3 |
HN2 |
245.9 |
240.0 |
| HN1 |
CN |
HN3 |
HN2 |
114.0 |
120.0 |
| HG21 |
CG2 |
CB |
CG1 |
55.4 |
299.9 |
| HG21 |
CG2 |
CB |
HB |
299.0 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
125.3 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
234.7 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.4 |
120.1 |
| HG22 |
CG2 |
CB |
CG1 |
180.6 |
59.9 |
| HG22 |
CG2 |
CB |
HB |
64.2 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
239.0 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
119.6 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.5 |
240.0 |
| HG23 |
CG2 |
CB |
CG1 |
290.1 |
180.0 |
| HG23 |
CG2 |
CB |
HB |
173.7 |
60.1 |
| CB |
CG2 |
HG23 |
HG21 |
121.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.5 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
119.4 |
120.0 |
| CD1 |
CG1 |
CB |
HB |
188.9 |
60.0 |
| CB |
CG1 |
CD1 |
HG12 |
125.3 |
239.9 |
| CB |
CG1 |
CD1 |
HG13 |
234.7 |
120.0 |
| HG12 |
CG1 |
CD1 |
HG13 |
109.4 |
240.1 |
| HD11 |
CD1 |
CG1 |
HD12 |
234.8 |
240.0 |
| HD11 |
CD1 |
CG1 |
HD13 |
125.3 |
120.0 |
| HD12 |
CD1 |
CG1 |
HD13 |
250.5 |
240.0 |
| HG12 |
CG1 |
CB |
HB |
314.2 |
299.9 |
| CB |
CG1 |
HG12 |
CD1 |
234.0 |
120.1 |
| CB |
CG1 |
HG12 |
HG13 |
117.0 |
240.0 |
| CD1 |
CG1 |
HG12 |
HG13 |
243.0 |
119.9 |
| HG12 |
CG1 |
CD1 |
HD11 |
54.8 |
300.1 |
| HG12 |
CG1 |
CD1 |
HD12 |
179.9 |
60.1 |
| HG12 |
CG1 |
CD1 |
HD13 |
289.4 |
180.1 |
| HG13 |
CG1 |
CB |
HB |
63.6 |
180.0 |
| CB |
CG1 |
HG13 |
CD1 |
126.0 |
240.0 |
| CB |
CG1 |
HG13 |
HG12 |
243.0 |
120.0 |
| CD1 |
CG1 |
HG13 |
HG12 |
117.0 |
240.0 |
| HG13 |
CG1 |
CD1 |
HD11 |
305.3 |
60.0 |
| HG13 |
CG1 |
CD1 |
HD12 |
70.5 |
180.0 |
| HG13 |
CG1 |
CD1 |
HD13 |
180.0 |
300.0 |
| HD11 |
CD1 |
CG1 |
HG12 |
54.8 |
300.1 |
| HD11 |
CD1 |
CG1 |
HG13 |
305.3 |
60.0 |
| CG1 |
CD1 |
HD11 |
HD12 |
125.2 |
120.0 |
| CG1 |
CD1 |
HD11 |
HD13 |
234.7 |
240.0 |
| HD12 |
CD1 |
HD11 |
HD13 |
109.5 |
120.0 |
| HD12 |
CD1 |
CG1 |
HG12 |
179.9 |
60.1 |
| HD12 |
CD1 |
CG1 |
HG13 |
70.5 |
180.0 |
| CG1 |
CD1 |
HD12 |
HD11 |
234.1 |
240.0 |
| CG1 |
CD1 |
HD12 |
HD13 |
117.0 |
120.0 |
| HD11 |
CD1 |
HD12 |
HD13 |
242.9 |
240.0 |
| HD13 |
CD1 |
CG1 |
HG12 |
289.4 |
180.1 |
| HD13 |
CD1 |
CG1 |
HG13 |
180.0 |
300.0 |
| CG1 |
CD1 |
HD13 |
HD11 |
126.0 |
120.1 |
| CG1 |
CD1 |
HD13 |
HD12 |
243.0 |
240.1 |
| HD11 |
CD1 |
HD13 |
HD12 |
117.0 |
120.0 |