PDB Chemical Component IMH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IMH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5' C5' 1.438 1.429
O5' HO'5 0.950 0.967
C5' C4' 1.562 1.530
C5' H5'1 1.100 1.089
C5' H5'2 1.100 1.090
C4' N4' 1.467 1.486
C4' C3' 1.552 1.549
C4' H4' 1.100 1.090
N4' C1' 1.457 1.479
N4' HN'4 1.000 1.009
C3' O3' 1.457 1.429
C3' C2' 1.581 1.546
C3' H3' 1.100 1.090
O3' HO'3 0.950 0.966
C2' O2' 1.445 1.429
C2' C1' 1.542 1.540
C2' H2' 1.100 1.090
O2' HO'2 0.950 0.967
C1' C9 1.631 1.508
C1' H1' 1.100 1.090
C9 C8 1.346 1.348
C9 C4 1.440 1.411
C8 N7 1.437 1.361
C8 H8 1.080 1.081
N7 C5 1.407 1.375
N7 HN7 1.000 0.970
C5 C6 1.473 1.410
C5 C4 1.345 1.399
C6 O6 1.238 1.219
C6 N1 1.410 1.351
N1 C2 1.418 1.359
C2 N3 1.324 1.302
C2 H2 1.079 1.080
N3 C4 1.358 1.355
N1 H1 1.000 0.970

Bond Angles for IMH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5' O5' HO'5 109.5 114.0
O5' C5' C4' 117.3 109.5
O5' C5' H5'1 107.5 109.6
O5' C5' H5'2 107.5 109.4
C4' C5' H5'1 107.5 109.5
C4' C5' H5'2 107.5 109.4
C5' C4' N4' 103.4 110.6
C5' C4' C3' 119.0 110.7
C5' C4' H4' 109.6 110.6
H5'1 C5' H5'2 109.5 109.5
N4' C4' C3' 103.7 103.2
N4' C4' H4' 110.9 110.6
C4' N4' C1' 111.5 105.8
C4' N4' HN'4 109.0 111.0
C3' C4' H4' 109.7 110.8
C4' C3' O3' 113.7 110.7
C4' C3' C2' 104.9 102.9
C4' C3' H3' 109.4 110.7
C1' N4' HN'4 109.0 110.9
N4' C1' C2' 106.5 107.1
N4' C1' C9 108.4 109.9
N4' C1' H1' 110.3 109.9
O3' C3' C2' 108.8 110.7
O3' C3' H3' 110.7 110.7
C3' O3' HO'3 109.5 114.0
C2' C3' H3' 109.0 110.9
C3' C2' O2' 113.1 110.3
C3' C2' C1' 105.2 105.1
C3' C2' H2' 108.9 110.3
O2' C2' C1' 109.4 110.3
O2' C2' H2' 110.7 110.3
C2' O2' HO'2 109.5 114.0
C1' C2' H2' 109.4 110.4
C2' C1' C9 114.5 109.9
C2' C1' H1' 109.1 110.0
C9 C1' H1' 108.0 110.1
C1' C9 C8 125.5 126.1
C1' C9 C4 126.3 126.0
C8 C9 C4 108.3 107.8
C9 C8 N7 109.6 109.5
C9 C8 H8 125.2 125.3
C9 C4 C5 106.3 106.6
C9 C4 N3 128.0 134.0
N7 C8 H8 125.2 125.3
C8 N7 C5 104.0 108.8
C8 N7 HN7 128.0 125.6
C5 N7 HN7 128.0 125.6
N7 C5 C6 126.2 134.2
N7 C5 C4 111.8 107.3
C6 C5 C4 122.0 118.5
C5 C6 O6 128.3 120.8
C5 C6 N1 109.1 118.4
C5 C4 N3 125.6 119.4
O6 C6 N1 122.6 120.8
C6 N1 C2 126.2 120.6
C6 N1 H1 116.9 119.8
N1 C2 N3 120.3 122.1
N1 C2 H2 119.9 119.0
C2 N1 H1 116.9 119.7
N3 C2 H2 119.8 118.9
C2 N3 C4 116.8 121.0

Torsion Angles for IMH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C5' O5' H5'1 238.9 239.9
C4' C5' O5' H5'2 121.1 119.9
O5' C5' C4' N4' 40.4 66.5
O5' C5' C4' C3' 154.6 180.3
O5' C5' C4' H4' 282.1 303.6
H5'1 C5' O5' H5'2 242.3 240.0
HO'5 O5' C5' C4' 180.0 180.0
HO'5 O5' C5' H5'1 301.2 300.1
HO'5 O5' C5' H5'2 58.9 60.1
C4' C5' O5' HO'5 180.0 180.0
O5' C5' C4' H5'1 121.2 120.1
O5' C5' C4' H5'2 238.9 240.1
H5'1 C5' C4' H5'2 117.7 120.0
N4' C4' C5' C3' 245.8 246.2
N4' C4' C5' H4' 118.3 123.0
C5' C4' N4' C1' 95.4 157.7
C5' C4' N4' HN'4 215.7 278.1
C3' C4' C5' H4' 232.6 236.8
C5' C4' C3' O3' 153.5 85.8
C5' C4' C3' C2' 272.3 204.2
C5' C4' C3' H3' 29.1 322.7
H5'1 C5' O5' HO'5 301.2 300.1
O5' C5' H5'1 C4' 232.8 239.9
O5' C5' H5'1 H5'2 116.4 120.0
C4' C5' H5'1 H5'2 243.6 240.0
H5'1 C5' C4' N4' 279.2 306.4
H5'1 C5' C4' C3' 33.5 60.2
H5'1 C5' C4' H4' 160.9 183.4
H5'2 C5' O5' HO'5 58.9 60.1
O5' C5' H5'2 C4' 127.1 119.9
O5' C5' H5'2 H5'1 243.6 239.9
C4' C5' H5'2 H5'1 116.4 120.0
H5'2 C5' C4' N4' 161.5 186.4
H5'2 C5' C4' C3' 275.7 300.2
H5'2 C5' C4' H4' 43.2 63.5
N4' C4' C5' H5'1 279.2 306.4
N4' C4' C5' H5'2 161.5 186.4
C5' C4' N4' C3' 124.8 118.4
C5' C4' N4' H4' 242.6 237.0
C3' C4' N4' H4' 117.7 118.6
N4' C4' C3' O3' 267.6 204.2
N4' C4' C3' C2' 26.4 322.6
N4' C4' C3' H3' 143.2 81.1
C1' N4' C4' HN'4 239.7 239.5
C4' N4' C1' C2' 19.8 334.6
C4' N4' C1' C9 256.1 215.3
C4' N4' C1' H1' 138.0 94.0
C3' C4' C5' H5'1 33.5 60.2
C3' C4' C5' H5'2 275.7 300.2
C5' C4' C3' N4' 245.9 241.6
C5' C4' C3' H4' 127.4 123.1
N4' C4' C3' H4' 241.4 241.5
C3' C4' N4' C1' 330.6 39.2
C3' C4' N4' HN'4 90.9 159.7
O3' C3' C4' C2' 241.2 241.6
O3' C3' C4' H3' 124.4 123.1
C4' C3' O3' HO'3 180.0 179.9
C2' C3' C4' H3' 243.2 241.5
C4' C3' C2' O2' 225.4 263.1
C4' C3' C2' C1' 344.8 21.9
C4' C3' C2' H2' 101.9 141.0
H4' C4' C5' H5'1 160.9 183.4
H4' C4' C5' H5'2 43.2 63.5
C5' C4' H4' N4' 113.6 123.0
C5' C4' H4' C3' 227.6 236.8
N4' C4' H4' C3' 114.0 113.9
H4' C4' N4' C1' 212.9 280.6
H4' C4' N4' HN'4 333.2 41.1
H4' C4' C3' O3' 26.2 322.7
H4' C4' C3' C2' 144.9 81.1
H4' C4' C3' H3' 261.8 199.6
C1' N4' C4' C3' 330.6 39.2
C1' N4' C4' H4' 212.9 280.6
C4' N4' C1' HN'4 120.3 120.5
C3' C2' C1' N4' 358.3 1.3
O2' C2' C1' N4' 120.1 120.2
N4' C1' C2' H2' 241.5 242.3
C2' C1' N4' C9 123.7 119.3
C2' C1' N4' H1' 241.8 240.6
C9 C1' N4' H1' 118.1 121.3
N4' C1' C9 C8 313.2 23.6
N4' C1' C9 C4 132.9 203.2
HN'4 N4' C4' C3' 90.9 159.7
HN'4 N4' C4' H4' 333.2 41.1
C4' N4' HN'4 C1' 238.2 242.6
HN'4 N4' C1' C2' 259.5 214.1
HN'4 N4' C1' C9 135.8 94.8
HN'4 N4' C1' H1' 17.7 333.5
O3' C3' C4' H4' 26.2 322.7
C4' C3' O3' C2' 116.5 113.5
C4' C3' O3' H3' 236.3 236.9
C2' C3' O3' H3' 119.8 123.4
O3' C3' C2' O2' 347.4 21.4
O3' C3' C2' C1' 106.8 140.3
O3' C3' C2' H2' 223.9 259.4
C2' C3' C4' H4' 144.9 81.1
C4' C3' C2' O3' 238.0 241.6
C4' C3' C2' H3' 117.1 118.4
N4' C1' C2' C3' 358.3 1.3
O3' C3' C2' H3' 239.1 236.8
C2' C3' O3' HO'3 63.5 66.4
O2' C2' C3' C1' 240.6 241.1
O2' C2' C3' H2' 123.5 122.1
C3' C2' O2' HO'2 180.0 298.6
C1' C2' C3' H2' 242.9 240.9
C3' C2' C1' C9 118.1 120.6
C3' C2' C1' H1' 239.3 241.9
H3' C3' C4' H4' 261.8 199.6
C4' C3' H3' O3' 126.1 123.1
C4' C3' H3' C2' 245.8 246.4
O3' C3' H3' C2' 119.7 123.3
H3' C3' O3' HO'3 303.7 303.1
H3' C3' C2' O2' 108.3 144.7
H3' C3' C2' C1' 227.7 263.5
H3' C3' C2' H2' 344.8 22.6
HO'3 O3' C3' C2' 63.5 66.4
HO'3 O3' C3' H3' 303.7 303.1
N4' C1' C2' O2' 120.1 120.2
O2' C2' C3' H3' 108.3 144.7
C3' C2' O2' C1' 116.9 115.7
C3' C2' O2' H2' 237.5 237.9
C1' C2' O2' H2' 120.6 122.2
O2' C2' C1' C9 239.9 239.5
O2' C2' C1' H1' 1.1 0.8
C2' C1' N4' HN'4 259.5 214.1
N4' C1' C2' C9 240.2 240.7
N4' C1' C2' H1' 119.0 119.4
C1' C2' C3' H3' 227.7 263.5
C3' C2' C1' O2' 238.2 241.1
C3' C2' C1' H2' 116.8 119.0
O2' C2' C1' H2' 238.6 237.9
C1' C2' O2' HO'2 63.1 182.9
C9 C1' C2' H1' 238.9 238.7
C2' C1' C9 C8 194.5 266.0
C2' C1' C9 C4 14.2 85.7
H2' C2' C3' H3' 344.8 22.6
C3' C2' H2' O2' 124.9 122.1
C3' C2' H2' C1' 245.6 244.2
O2' C2' H2' C1' 120.7 122.1
H2' C2' O2' HO'2 302.4 60.7
H2' C2' C1' C9 1.4 1.6
H2' C2' C1' H1' 122.5 122.9
HO'2 O2' C2' C1' 63.1 182.9
HO'2 O2' C2' H2' 302.4 60.7
C9 C1' N4' HN'4 135.8 94.8
N4' C1' C9 C2' 118.8 117.5
N4' C1' C9 H1' 240.5 238.8
C9 C1' C2' H2' 1.4 1.6
C2' C1' C9 H1' 121.7 121.2
C8 C9 C1' C4 180.3 180.3
C1' C9 C8 N7 179.5 180.0
C1' C9 C8 H8 359.5 359.9
C1' C9 C4 C5 181.2 179.9
C1' C9 C4 N3 1.1 0.7
H1' C1' N4' HN'4 17.7 333.5
N4' C1' H1' C2' 243.4 242.4
N4' C1' H1' C9 118.3 121.2
H1' C1' C2' H2' 122.5 122.9
C2' C1' H1' C9 235.0 238.8
H1' C1' C9 C8 72.8 144.8
H1' C1' C9 C4 252.4 324.5
C8 C9 C1' H1' 72.8 144.8
C1' C9 C8 C4 179.7 179.7
C8 C9 C4 C5 0.9 359.6
C8 C9 C4 N3 180.8 180.5
N7 C8 C9 H8 180.0 180.1
C9 C8 N7 C5 359.5 360.0
C9 C8 N7 HN7 179.5 180.0
C4 C9 C1' H1' 252.4 324.5
C1' C9 C4 C8 180.3 180.3
C4 C9 C8 N7 359.8 0.3
C4 C9 C8 H8 179.8 180.2
N7 C5 C4 C9 358.8 0.3
C6 C5 C4 C9 180.1 180.2
C5 C4 C9 N3 180.1 179.2
C2 N3 C4 C9 179.8 179.6
N7 C8 C9 C4 359.8 0.3
C9 C8 N7 H8 180.0 179.9
C5 N7 C8 HN7 180.0 179.9
C8 N7 C5 C6 179.7 180.0
C8 N7 C5 C4 1.1 359.8
H8 C8 C9 C4 179.8 180.2
C9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 179.5 180.0
H8 C8 N7 HN7 359.5 0.1
C9 C4 C5 N7 358.8 0.3
C5 N7 C8 H8 179.5 180.0
C8 N7 C5 HN7 180.0 180.1
C6 C5 N7 C4 178.6 180.2
N7 C5 C6 O6 4.3 360.0
N7 C5 C6 N1 181.4 180.0
N7 C5 C4 N3 178.8 179.6
HN7 N7 C8 H8 359.5 0.1
C8 N7 HN7 C5 180.0 179.9
HN7 N7 C5 C6 359.7 360.0
HN7 N7 C5 C4 181.1 179.8
C9 C4 C5 C6 180.1 180.2
C6 C5 N7 HN7 359.7 360.0
N7 C5 C6 C4 181.6 179.8
C6 C5 C4 N3 0.2 359.5
O6 C6 C5 N1 182.9 180.0
C5 C6 N1 C2 0.3 0.0
C5 C6 N1 H1 180.3 180.0
C9 C4 C5 N3 179.9 180.7
C4 C5 N7 HN7 181.1 179.8
N7 C5 C4 C6 178.6 180.2
C4 C5 C6 O6 182.7 180.2
C4 C5 C6 N1 359.8 0.3
C2 N3 C4 C5 359.7 0.5
O6 C6 C5 C4 182.7 180.2
C5 C6 O6 N1 176.7 180.0
O6 C6 N1 C2 177.6 180.0
O6 C6 N1 H1 357.6 0.0
N1 C6 C5 C4 359.8 0.3
C5 C6 N1 O6 182.7 180.0
C6 N1 C2 N3 359.6 360.0
C6 N1 C2 H2 179.6 180.0
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 H1 180.0 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.4 359.7
C9 C4 N3 C2 179.8 179.6
C5 C4 N3 C2 359.7 0.5
N1 C2 N3 H2 180.0 180.0
N3 C2 N1 H1 179.5 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N1 H1 359.6 0.0
H2 C2 N3 C4 180.3 179.7
C9 C4 N3 C5 180.1 179.1
C4 N3 C2 H2 180.3 179.7
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N3 179.5 180.0
H1 N1 C2 H2 359.6 0.0