PDB Chemical Component IMG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IMG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5' C5' 1.434 1.430
O5' HO'5 0.950 0.967
C5' C4' 1.553 1.529
C5' H5'1 1.115 1.091
C5' H5'2 1.115 1.089
C4' N4' 1.465 1.485
C4' C3' 1.565 1.543
C4' H4' 1.115 1.089
N4' C1' 1.460 1.485
N4' HN'4 1.019 1.009
C3' O3' 1.456 1.428
C3' C2' 1.568 1.545
C3' H3' 1.115 1.090
O3' HO'3 0.951 0.967
C2' O2' 1.433 1.429
C2' C1' 1.544 1.543
C2' H2' 1.115 1.090
O2' HO'2 0.950 0.967
C1' C9 1.626 1.506
C1' H1' 1.115 1.091
C9 C8 1.340 1.348
C9 C4 1.451 1.412
C8 N7 1.439 1.361
C8 H8 1.103 1.080
N7 C5 1.412 1.379
N7 H7 1.019 0.970
C5 C6 1.472 1.408
C5 C4 1.339 1.400
C6 O6 1.241 1.219
C6 N1 1.376 1.350
N1 C2 1.393 1.364
N1 H1 1.020 0.971
N2 C2 1.383 1.374
N2 H21 1.020 0.969
N2 H22 1.020 0.970
C2 N3 1.323 1.312
N3 C4 1.338 1.347

Bond Angles for IMG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5' O5' HO'5 117.5 106.8
O5' C5' C4' 117.5 109.5
O5' C5' H5'1 109.3 109.5
O5' C5' H5'2 109.3 109.4
C4' C5' H5'1 109.3 109.5
C4' C5' H5'2 109.2 109.6
C5' C4' N4' 102.2 110.4
C5' C4' C3' 118.6 110.5
C5' C4' H4' 106.8 110.4
H5'1 C5' H5'2 100.9 109.5
N4' C4' C3' 103.4 104.6
N4' C4' H4' 121.2 110.4
C4' N4' C1' 110.4 104.3
C4' N4' HN'4 111.9 106.7
C3' C4' H4' 105.6 110.4
C4' C3' O3' 114.7 110.3
C4' C3' C2' 104.6 105.1
C4' C3' H3' 109.0 110.3
C1' N4' HN'4 111.8 106.7
N4' C1' C2' 107.1 104.7
N4' C1' C9 108.6 110.5
N4' C1' H1' 113.1 110.4
O3' C3' C2' 108.2 110.3
O3' C3' H3' 105.3 110.3
C3' O3' HO'3 114.7 106.8
C2' C3' H3' 115.3 110.4
C3' C2' O2' 111.9 110.3
C3' C2' C1' 104.9 105.0
C3' C2' H2' 111.0 110.3
O2' C2' C1' 109.5 110.6
O2' C2' H2' 106.4 110.3
C2' O2' HO'2 111.9 106.8
C1' C2' H2' 113.3 110.2
C2' C1' C9 113.6 110.5
C2' C1' H1' 108.0 110.4
C9 C1' H1' 106.5 110.3
C1' C9 C8 125.5 126.0
C1' C9 C4 126.2 126.1
C8 C9 C4 108.3 107.9
C9 C8 N7 109.3 109.5
C9 C8 H8 122.4 125.3
C9 C4 C5 106.7 106.6
C9 C4 N3 128.2 133.8
N7 C8 H8 128.3 125.2
C8 N7 C5 104.5 108.7
C8 N7 H7 128.5 125.7
C5 N7 H7 127.1 125.6
N7 C5 C6 126.3 134.0
N7 C5 C4 111.2 107.3
C6 C5 C4 122.4 118.7
C5 C6 O6 129.6 120.8
C5 C6 N1 108.3 118.5
C5 C4 N3 125.2 119.5
O6 C6 N1 122.0 120.7
C6 N1 C2 127.0 120.5
C6 N1 H1 115.8 119.8
C2 N1 H1 117.2 119.8
N1 C2 N2 118.4 119.1
N1 C2 N3 121.0 121.9
C2 N2 H21 118.4 120.0
C2 N2 H22 109.0 120.0
N2 C2 N3 120.2 119.0
H21 N2 H22 109.0 120.0
C2 N3 C4 116.1 120.9

Torsion Angles for IMG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C5' O5' H5'1 234.8 120.0
C4' C5' O5' H5'2 125.2 240.0
O5' C5' C4' N4' 56.9 61.5
O5' C5' C4' C3' 169.8 176.7
O5' C5' C4' H4' 288.7 299.1
H5'1 C5' O5' H5'2 250.5 120.0
HO'5 O5' C5' C4' 180.0 180.0
HO'5 O5' C5' H5'1 305.2 59.9
HO'5 O5' C5' H5'2 54.8 300.0
C4' C5' O5' HO'5 180.0 180.0
O5' C5' C4' H5'1 125.3 240.0
O5' C5' C4' H5'2 234.7 119.9
H5'1 C5' C4' H5'2 109.5 239.9
N4' C4' C5' C3' 247.1 244.8
N4' C4' C5' H4' 128.2 122.4
C5' C4' N4' C1' 92.6 158.3
C5' C4' N4' HN'4 327.4 271.0
C3' C4' C5' H4' 241.1 237.6
C5' C4' C3' O3' 158.5 98.3
C5' C4' C3' C2' 276.8 217.2
C5' C4' C3' H3' 40.7 336.2
H5'1 C5' O5' HO'5 305.2 59.9
O5' C5' H5'1 C4' 230.1 120.0
O5' C5' H5'1 H5'2 115.1 240.1
C4' C5' H5'1 H5'2 245.0 120.1
H5'1 C5' C4' N4' 291.6 181.5
H5'1 C5' C4' C3' 44.5 296.6
H5'1 C5' C4' H4' 163.4 59.1
H5'2 C5' O5' HO'5 54.8 300.0
O5' C5' H5'2 C4' 129.9 240.0
O5' C5' H5'2 H5'1 244.9 119.9
C4' C5' H5'2 H5'1 115.0 239.9
H5'2 C5' C4' N4' 182.1 301.6
H5'2 C5' C4' C3' 295.0 56.7
H5'2 C5' C4' H4' 53.9 179.2
N4' C4' C5' H5'1 291.6 181.5
N4' C4' C5' H5'2 182.1 301.6
C5' C4' N4' C3' 123.7 118.8
C5' C4' N4' H4' 241.6 237.6
C3' C4' N4' H4' 117.8 118.8
N4' C4' C3' O3' 270.7 217.1
N4' C4' C3' C2' 29.1 336.0
N4' C4' C3' H3' 152.9 95.0
C1' N4' C4' HN'4 125.2 247.3
C4' N4' C1' C2' 20.3 320.6
C4' N4' C1' C9 257.3 201.7
C4' N4' C1' H1' 139.2 79.4
C3' C4' C5' H5'1 44.5 296.6
C3' C4' C5' H5'2 295.0 56.7
C5' C4' C3' N4' 247.8 241.2
C5' C4' C3' H4' 119.5 122.4
N4' C4' C3' H4' 231.8 241.2
C3' C4' N4' C1' 328.9 39.5
C3' C4' N4' HN'4 203.6 152.2
O3' C3' C4' C2' 241.6 241.1
O3' C3' C4' H3' 117.8 122.2
C4' C3' O3' HO'3 180.0 180.0
C2' C3' C4' H3' 236.1 241.1
C4' C3' C2' O2' 223.9 241.0
C4' C3' C2' C1' 342.6 0.2
C4' C3' C2' H2' 105.3 118.9
H4' C4' C5' H5'1 163.4 59.1
H4' C4' C5' H5'2 53.9 179.2
C5' C4' H4' N4' 116.1 122.4
C5' C4' H4' C3' 232.9 237.5
N4' C4' H4' C3' 116.8 115.2
H4' C4' N4' C1' 211.0 280.7
H4' C4' N4' HN'4 85.8 33.4
H4' C4' C3' O3' 38.9 335.9
H4' C4' C3' C2' 157.3 94.8
H4' C4' C3' H3' 281.2 213.8
C1' N4' C4' C3' 328.9 39.5
C1' N4' C4' H4' 211.0 280.7
C4' N4' C1' HN'4 234.7 112.7
C3' C2' C1' N4' 359.4 23.7
O2' C2' C1' N4' 119.6 142.7
N4' C1' C2' H2' 238.2 264.9
C2' C1' N4' C9 123.0 118.9
C2' C1' N4' H1' 241.1 241.2
C9 C1' N4' H1' 118.1 122.3
N4' C1' C9 C8 317.0 27.0
N4' C1' C9 C4 137.1 206.9
HN'4 N4' C4' C3' 203.6 152.2
HN'4 N4' C4' H4' 85.8 33.4
C4' N4' HN'4 C1' 124.4 249.0
HN'4 N4' C1' C2' 145.6 207.9
HN'4 N4' C1' C9 22.6 89.0
HN'4 N4' C1' H1' 264.5 326.7
O3' C3' C4' H4' 38.9 335.9
C4' C3' O3' C2' 116.3 115.6
C4' C3' O3' H3' 240.2 237.9
C2' C3' O3' H3' 123.9 122.2
O3' C3' C2' O2' 346.6 359.9
O3' C3' C2' C1' 105.3 119.1
O3' C3' C2' H2' 227.9 237.8
C2' C3' C4' H4' 157.3 94.8
C4' C3' C2' O3' 237.3 241.1
C4' C3' C2' H3' 119.6 118.9
N4' C1' C2' C3' 359.4 23.7
O3' C3' C2' H3' 242.3 237.8
C2' C3' O3' HO'3 63.7 64.4
O2' C2' C3' C1' 241.3 240.8
O2' C2' C3' H2' 118.7 122.1
C3' C2' O2' HO'2 180.0 298.6
C1' C2' C3' H2' 237.3 241.3
C3' C2' C1' C9 119.3 142.6
C3' C2' C1' H1' 237.3 264.9
H3' C3' C4' H4' 281.2 213.8
C4' C3' H3' O3' 123.5 122.2
C4' C3' H3' C2' 242.8 244.3
O3' C3' H3' C2' 119.3 122.2
H3' C3' O3' HO'3 299.8 302.1
H3' C3' C2' O2' 104.3 122.1
H3' C3' C2' C1' 222.9 241.3
H3' C3' C2' H2' 345.6 0.0
HO'3 O3' C3' C2' 63.7 64.4
HO'3 O3' C3' H3' 299.8 302.1
N4' C1' C2' O2' 119.6 142.7
O2' C2' C3' H3' 104.3 122.1
C3' C2' O2' C1' 115.9 115.7
C3' C2' O2' H2' 238.7 237.9
C1' C2' O2' H2' 122.8 122.1
O2' C2' C1' C9 239.5 261.6
O2' C2' C1' H1' 357.5 23.9
C2' C1' N4' HN'4 145.6 207.9
N4' C1' C2' C9 240.1 241.1
N4' C1' C2' H1' 122.1 118.8
C1' C2' C3' H3' 222.9 241.3
C3' C2' C1' O2' 239.8 241.0
C3' C2' C1' H2' 121.2 118.8
O2' C2' C1' H2' 241.4 237.8
C1' C2' O2' HO'2 64.1 182.8
C9 C1' C2' H1' 242.0 237.7
C2' C1' C9 C8 197.9 271.6
C2' C1' C9 C4 18.1 91.6
H2' C2' C3' H3' 345.6 0.0
C3' C2' H2' O2' 121.9 122.1
C3' C2' H2' C1' 242.3 244.5
O2' C2' H2' C1' 120.4 122.4
H2' C2' O2' HO'2 301.3 60.7
H2' C2' C1' C9 358.1 23.8
H2' C2' C1' H1' 116.1 146.0
HO'2 O2' C2' C1' 64.1 182.8
HO'2 O2' C2' H2' 301.3 60.7
C9 C1' N4' HN'4 22.6 89.0
N4' C1' C9 C2' 119.0 115.4
N4' C1' C9 H1' 237.8 237.7
C9 C1' C2' H2' 358.1 23.8
C2' C1' C9 H1' 118.8 122.3
C8 C9 C1' C4 179.8 180.1
C1' C9 C8 N7 180.0 180.0
C1' C9 C8 H8 0.0 359.9
C1' C9 C4 C5 180.6 180.0
C1' C9 C4 N3 0.5 0.1
H1' C1' N4' HN'4 264.5 326.7
N4' C1' H1' C2' 241.6 244.7
N4' C1' H1' C9 119.3 122.4
H1' C1' C2' H2' 116.1 146.0
C2' C1' H1' C9 237.6 237.6
H1' C1' C9 C8 79.1 149.3
H1' C1' C9 C4 259.3 329.3
C8 C9 C1' H1' 79.1 149.3
C1' C9 C8 C4 180.2 179.9
C8 C9 C4 C5 0.7 360.0
C8 C9 C4 N3 180.6 180.0
N7 C8 C9 H8 180.0 180.1
C9 C8 N7 C5 359.5 360.0
C9 C8 N7 H7 179.5 180.0
C4 C9 C1' H1' 259.3 329.3
C1' C9 C4 C8 179.8 180.1
C4 C9 C8 N7 359.9 0.0
C4 C9 C8 H8 179.9 179.9
N7 C5 C4 C9 358.9 0.0
C6 C5 C4 C9 180.6 180.0
C5 C4 C9 N3 180.1 179.9
C2 N3 C4 C9 180.0 180.0
N7 C8 C9 C4 359.9 0.0
C9 C8 N7 H8 180.0 179.9
C5 N7 C8 H7 180.0 180.0
C8 N7 C5 C6 179.3 180.0
C8 N7 C5 C4 1.0 360.0
H8 C8 C9 C4 179.9 179.9
C9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 179.5 180.1
H8 C8 N7 H7 359.5 0.1
C9 C4 C5 N7 358.9 0.0
C5 N7 C8 H8 179.5 180.1
C8 N7 C5 H7 180.0 180.0
C6 C5 N7 C4 178.3 180.0
N7 C5 C6 O6 4.3 0.1
N7 C5 C6 N1 181.0 179.7
N7 C5 C4 N3 179.0 180.0
H7 N7 C8 H8 359.5 0.1
C8 N7 H7 C5 180.0 180.0
H7 N7 C5 C6 359.3 359.9
H7 N7 C5 C4 181.0 179.9
C9 C4 C5 C6 180.6 180.0
C6 C5 N7 H7 359.3 359.9
N7 C5 C6 C4 181.9 180.0
C6 C5 C4 N3 0.7 360.0
O6 C6 C5 N1 183.3 180.4
C5 C6 N1 C2 0.9 0.6
C5 C6 N1 H1 180.8 180.0
C9 C4 C5 N3 179.9 180.1
C4 C5 N7 H7 181.0 179.9
N7 C5 C4 C6 178.4 180.0
C4 C5 C6 O6 182.4 180.1
C4 C5 C6 N1 359.1 359.7
C2 N3 C4 C5 359.8 0.0
O6 C6 C5 C4 182.4 180.1
C5 C6 O6 N1 176.3 179.6
O6 C6 N1 C2 177.8 180.3
O6 C6 N1 H1 357.8 359.6
N1 C6 C5 C4 359.1 359.7
C5 C6 N1 O6 183.0 180.4
C2 N1 C6 H1 180.0 180.7
C6 N1 C2 N2 172.5 179.7
C6 N1 C2 N3 359.5 359.4
C6 N1 C2 H1 180.0 179.3
N1 C2 N2 H21 180.0 179.8
N1 C2 N2 H22 54.7 359.4
N2 C2 N1 N3 173.0 180.3
N1 C2 N3 C4 0.0 0.3
C6 N1 H1 C2 180.0 180.7
H1 N1 C2 N2 352.5 0.3
H1 N1 C2 N3 179.5 180.0
N2 C2 N1 H1 352.5 0.3
N1 C2 N2 N3 187.0 179.7
H21 N2 C2 H22 125.3 180.3
N2 C2 N3 C4 187.2 180.0
C2 N2 H21 H22 234.7 179.7
H21 N2 C2 N3 353.1 0.0
C2 N2 H22 H21 130.7 180.3
H22 N2 C2 N3 227.7 179.7
C9 C4 N3 C2 180.0 180.0
C5 C4 N3 C2 359.8 0.0
N3 C2 N1 H1 179.5 180.0
N1 C2 N3 N2 172.8 180.3
N3 C2 N2 H21 353.1 0.0
N3 C2 N2 H22 227.7 179.7
C9 C4 N3 C5 180.1 179.9