PDB Chemical Component IM6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IM6
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C5 |
1.361 |
1.341 |
N1 |
C2 |
1.347 |
1.306 |
C5 |
C4 |
1.376 |
1.347 |
C2 |
N3 |
1.340 |
1.357 |
C4 |
N3 |
1.337 |
1.371 |
N3 |
C6 |
1.366 |
1.404 |
C6 |
C11 |
1.407 |
1.410 |
C6 |
C7 |
1.410 |
1.356 |
C11 |
C10 |
1.389 |
1.360 |
C7 |
N8 |
1.343 |
1.365 |
C10 |
C9 |
1.378 |
1.409 |
N8 |
C9 |
1.351 |
1.371 |
N8 |
C12 |
1.330 |
1.370 |
C9 |
N14 |
1.360 |
1.327 |
C12 |
C13 |
1.376 |
1.358 |
N14 |
C13 |
1.358 |
1.338 |
C13 |
N15 |
1.353 |
1.401 |
O47 |
C16 |
1.238 |
1.216 |
N15 |
C16 |
1.351 |
1.348 |
C16 |
C17 |
1.519 |
1.478 |
C17 |
C22 |
1.401 |
1.396 |
C17 |
C18 |
1.402 |
1.397 |
C22 |
C21 |
1.394 |
1.379 |
C18 |
C19 |
1.412 |
1.380 |
C21 |
C20 |
1.392 |
1.383 |
C19 |
C20 |
1.410 |
1.383 |
C20 |
C27 |
1.526 |
1.507 |
C32 |
C27 |
1.530 |
1.530 |
C27 |
C28 |
1.532 |
1.530 |
C27 |
C36 |
1.529 |
1.530 |
C4 |
H1 |
1.080 |
1.080 |
C5 |
H2 |
1.079 |
1.080 |
C7 |
H3 |
1.080 |
1.080 |
C10 |
H4 |
1.080 |
1.080 |
C21 |
H5 |
1.080 |
1.081 |
C22 |
H6 |
1.080 |
1.080 |
C28 |
H7 |
1.100 |
1.090 |
C28 |
H8 |
1.100 |
1.090 |
C28 |
H9 |
1.100 |
1.089 |
C36 |
H10 |
1.100 |
1.090 |
C36 |
H11 |
1.100 |
1.090 |
C36 |
H12 |
1.100 |
1.090 |
C32 |
H13 |
1.100 |
1.090 |
C32 |
H14 |
1.100 |
1.090 |
C32 |
H15 |
1.100 |
1.091 |
C19 |
H16 |
1.080 |
1.080 |
C18 |
H17 |
1.080 |
1.080 |
N15 |
H18 |
1.000 |
0.970 |
C12 |
H19 |
1.080 |
1.080 |
C11 |
H20 |
1.080 |
1.080 |
C2 |
H21 |
1.080 |
1.080 |
Bond Angles for IM6
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
N1 |
C2 |
108.2 |
109.4 |
N1 |
C5 |
C4 |
108.5 |
108.2 |
N1 |
C5 |
H2 |
125.7 |
126.0 |
N1 |
C2 |
N3 |
106.4 |
108.6 |
N1 |
C2 |
H21 |
126.8 |
125.7 |
C5 |
C4 |
H1 |
127.5 |
126.6 |
C4 |
N3 |
C6 |
124.4 |
126.5 |
N3 |
C6 |
C11 |
123.7 |
119.9 |
N3 |
C6 |
C7 |
123.3 |
119.9 |
C7 |
C6 |
C11 |
113.0 |
120.1 |
C6 |
C11 |
C10 |
122.7 |
119.6 |
C6 |
C11 |
H20 |
118.6 |
120.1 |
C6 |
C7 |
N8 |
123.8 |
120.5 |
C6 |
C7 |
H3 |
118.1 |
119.7 |
C11 |
C10 |
H4 |
119.8 |
120.2 |
C7 |
N8 |
C9 |
122.1 |
120.5 |
C7 |
N8 |
C12 |
131.0 |
132.4 |
N8 |
C7 |
H3 |
118.1 |
119.8 |
C10 |
C9 |
N8 |
118.0 |
119.7 |
C10 |
C9 |
N14 |
131.7 |
132.1 |
C9 |
C10 |
H4 |
119.8 |
120.3 |
N8 |
C9 |
N14 |
110.4 |
108.2 |
N8 |
C12 |
H19 |
125.5 |
126.4 |
C13 |
N15 |
C16 |
124.0 |
120.0 |
C13 |
N15 |
H18 |
118.0 |
120.0 |
C16 |
C17 |
C18 |
121.3 |
120.1 |
C22 |
C17 |
C18 |
117.9 |
119.7 |
C17 |
C22 |
C21 |
121.8 |
119.8 |
C17 |
C22 |
H6 |
119.2 |
120.0 |
C17 |
C18 |
C19 |
120.2 |
119.8 |
C17 |
C18 |
H17 |
119.9 |
120.0 |
C22 |
C21 |
H5 |
119.5 |
119.9 |
C18 |
C19 |
H16 |
119.4 |
119.9 |
C21 |
C20 |
C27 |
118.5 |
119.8 |
C20 |
C27 |
C28 |
110.0 |
109.5 |
C20 |
C27 |
C36 |
111.1 |
109.5 |
C27 |
C28 |
H7 |
109.5 |
109.5 |
C27 |
C28 |
H8 |
109.5 |
109.5 |
C27 |
C28 |
H9 |
109.4 |
109.5 |
C27 |
C36 |
H10 |
109.5 |
109.5 |
C27 |
C36 |
H11 |
109.5 |
109.5 |
C27 |
C36 |
H12 |
109.5 |
109.5 |
H7 |
C28 |
H8 |
109.5 |
109.4 |
H7 |
C28 |
H9 |
109.4 |
109.5 |
H8 |
C28 |
H9 |
109.5 |
109.4 |
H10 |
C36 |
H11 |
109.5 |
109.4 |
H10 |
C36 |
H12 |
109.5 |
109.5 |
H11 |
C36 |
H12 |
109.5 |
109.4 |
H13 |
C32 |
H14 |
109.5 |
109.5 |
H13 |
C32 |
H15 |
109.4 |
109.4 |
H14 |
C32 |
H15 |
109.5 |
109.4 |
Torsion Angles for IM6
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
N1 |
C2 |
N3 |
0.3 |
360.0 |
C5 |
N1 |
C2 |
H21 |
180.3 |
180.0 |
N1 |
C5 |
C4 |
H1 |
179.6 |
180.0 |
C2 |
N1 |
C5 |
C4 |
0.1 |
0.0 |
C2 |
N1 |
C5 |
H2 |
180.0 |
180.0 |
C4 |
C5 |
N1 |
C2 |
0.1 |
0.0 |
N1 |
C5 |
C4 |
H2 |
180.0 |
180.0 |
C5 |
C4 |
N3 |
C6 |
180.4 |
180.0 |
N1 |
C2 |
N3 |
H21 |
180.0 |
180.0 |
N1 |
C5 |
C4 |
N3 |
359.6 |
360.0 |
N1 |
C2 |
N3 |
C4 |
359.4 |
0.0 |
C4 |
N3 |
C6 |
C11 |
192.7 |
295.0 |
C4 |
N3 |
C6 |
C7 |
13.2 |
115.3 |
N1 |
C2 |
N3 |
C6 |
179.6 |
180.0 |
C7 |
C6 |
N3 |
C11 |
180.6 |
180.2 |
N3 |
C6 |
C11 |
C10 |
179.9 |
179.8 |
N3 |
C6 |
C11 |
H20 |
359.9 |
360.0 |
N3 |
C6 |
C7 |
N8 |
179.9 |
180.0 |
N3 |
C6 |
C7 |
H3 |
359.9 |
360.0 |
N3 |
C6 |
C11 |
C7 |
180.5 |
180.2 |
C11 |
C6 |
C7 |
N8 |
0.4 |
0.2 |
C11 |
C6 |
C7 |
H3 |
180.5 |
180.2 |
C6 |
C11 |
C10 |
H4 |
180.1 |
180.2 |
N3 |
C6 |
C7 |
C11 |
179.5 |
179.8 |
C7 |
C6 |
C11 |
C10 |
359.4 |
359.5 |
C7 |
C6 |
C11 |
H20 |
179.3 |
179.7 |
C6 |
C7 |
N8 |
C9 |
0.4 |
0.0 |
C6 |
C7 |
N8 |
C12 |
178.5 |
180.0 |
N8 |
C7 |
C6 |
H3 |
180.0 |
180.0 |
C6 |
C11 |
C10 |
H20 |
180.0 |
180.2 |
C9 |
C10 |
C11 |
H4 |
180.0 |
180.2 |
N8 |
C7 |
C6 |
C11 |
0.4 |
0.2 |
C6 |
C7 |
N8 |
H3 |
180.0 |
180.0 |
C10 |
C9 |
N8 |
C7 |
359.0 |
360.0 |
C7 |
N8 |
C9 |
N14 |
179.2 |
179.8 |
C7 |
N8 |
C12 |
H19 |
0.6 |
0.1 |
C6 |
C11 |
C10 |
C9 |
0.0 |
0.4 |
C11 |
C10 |
C9 |
H4 |
180.0 |
179.8 |
C7 |
N8 |
C9 |
C10 |
359.0 |
360.0 |
N8 |
C9 |
C10 |
N14 |
180.3 |
179.8 |
C7 |
N8 |
C9 |
C12 |
178.5 |
180.0 |
C9 |
N8 |
C7 |
H3 |
180.4 |
180.0 |
C10 |
C9 |
N8 |
N14 |
179.8 |
180.2 |
N8 |
C9 |
C10 |
H4 |
180.8 |
180.0 |
C9 |
N8 |
C12 |
H19 |
179.0 |
180.1 |
C7 |
N8 |
C12 |
C9 |
181.7 |
180.0 |
C12 |
N8 |
C7 |
H3 |
358.5 |
360.0 |
C10 |
C9 |
N8 |
C12 |
180.4 |
180.0 |
C10 |
C9 |
N14 |
N8 |
180.3 |
179.8 |
N14 |
C9 |
C10 |
H4 |
0.5 |
0.2 |
C7 |
N8 |
C12 |
C13 |
180.6 |
180.0 |
C12 |
C13 |
N15 |
H18 |
178.9 |
180.0 |
C10 |
C9 |
N14 |
C13 |
180.2 |
180.1 |
N14 |
C13 |
N15 |
H18 |
357.4 |
359.9 |
C13 |
N15 |
C16 |
O47 |
1.5 |
360.0 |
O47 |
C16 |
C17 |
C18 |
328.6 |
180.3 |
C13 |
N15 |
C16 |
H18 |
180.0 |
180.0 |
C13 |
N15 |
C16 |
C17 |
181.7 |
180.0 |
C22 |
C17 |
C16 |
C18 |
179.8 |
179.7 |
C16 |
C17 |
C22 |
H6 |
359.9 |
0.3 |
C16 |
C17 |
C18 |
C19 |
180.3 |
179.7 |
C16 |
C17 |
C18 |
H17 |
0.2 |
359.8 |
C16 |
C17 |
C22 |
C18 |
180.2 |
180.3 |
C22 |
C17 |
C18 |
C19 |
0.5 |
360.0 |
C22 |
C17 |
C18 |
H17 |
180.4 |
180.0 |
C17 |
C22 |
C21 |
H5 |
180.2 |
180.1 |
C18 |
C17 |
C22 |
C21 |
359.7 |
0.0 |
C18 |
C17 |
C22 |
H6 |
179.7 |
180.0 |
C17 |
C18 |
C19 |
H16 |
179.5 |
180.0 |
C21 |
C22 |
C17 |
C18 |
359.7 |
0.0 |
C17 |
C22 |
C21 |
H6 |
180.0 |
180.0 |
C22 |
C21 |
C20 |
C27 |
180.6 |
180.1 |
C17 |
C18 |
C19 |
H17 |
180.0 |
180.1 |
C17 |
C22 |
C21 |
C20 |
0.2 |
360.0 |
C21 |
C20 |
C27 |
C28 |
55.4 |
60.0 |
C21 |
C20 |
C27 |
C36 |
175.1 |
180.0 |
C17 |
C18 |
C19 |
C20 |
359.5 |
0.1 |
C20 |
C27 |
C28 |
H7 |
180.0 |
60.1 |
C20 |
C27 |
C28 |
H8 |
300.0 |
180.0 |
C20 |
C27 |
C28 |
H9 |
60.0 |
300.0 |
C20 |
C27 |
C36 |
H10 |
180.0 |
60.0 |
C20 |
C27 |
C36 |
H11 |
300.0 |
180.0 |
C20 |
C27 |
C36 |
H12 |
60.0 |
300.0 |
C32 |
C27 |
C28 |
H7 |
300.8 |
180.0 |
C32 |
C27 |
C28 |
H8 |
60.8 |
300.0 |
C32 |
C27 |
C28 |
H9 |
180.8 |
60.0 |
C32 |
C27 |
C36 |
H10 |
58.5 |
300.0 |
C32 |
C27 |
C36 |
H11 |
178.4 |
60.0 |
C32 |
C27 |
C36 |
H12 |
298.4 |
179.9 |
C20 |
C27 |
C28 |
C36 |
121.5 |
120.0 |
H7 |
C28 |
C27 |
H8 |
240.0 |
240.1 |
H7 |
C28 |
C27 |
H9 |
120.0 |
120.1 |
H8 |
C28 |
C27 |
H9 |
240.0 |
240.0 |
C20 |
C27 |
C36 |
C28 |
239.2 |
240.0 |
C36 |
C27 |
C28 |
H7 |
58.5 |
300.0 |
C36 |
C27 |
C28 |
H8 |
178.5 |
60.0 |
C36 |
C27 |
C28 |
H9 |
298.5 |
179.9 |
H10 |
C36 |
C27 |
H11 |
240.0 |
240.0 |
H10 |
C36 |
C27 |
H12 |
120.0 |
120.0 |
H11 |
C36 |
C27 |
H12 |
240.0 |
240.0 |
H1 |
C4 |
N3 |
C6 |
0.4 |
360.0 |
H2 |
C5 |
N1 |
C2 |
180.0 |
180.0 |
N1 |
C5 |
H2 |
C4 |
180.0 |
180.0 |
H2 |
C5 |
C4 |
H1 |
359.7 |
0.0 |
H3 |
C7 |
C6 |
C11 |
180.5 |
180.2 |
C6 |
C7 |
H3 |
N8 |
180.0 |
180.0 |
H3 |
C7 |
N8 |
C9 |
180.4 |
180.0 |
H3 |
C7 |
N8 |
C12 |
358.5 |
360.0 |
H4 |
C10 |
C9 |
N8 |
180.8 |
180.0 |
H4 |
C10 |
C9 |
N14 |
0.5 |
0.2 |
H5 |
C21 |
C20 |
C27 |
0.5 |
359.9 |
H6 |
C22 |
C17 |
C18 |
179.7 |
180.0 |
C17 |
C22 |
H6 |
C21 |
180.0 |
180.0 |
H6 |
C22 |
C21 |
H5 |
0.2 |
0.1 |
C27 |
C28 |
H7 |
H8 |
120.0 |
120.0 |
C27 |
C28 |
H7 |
H9 |
240.0 |
240.0 |
H8 |
C28 |
H7 |
H9 |
120.0 |
120.0 |
C27 |
C28 |
H8 |
H7 |
239.9 |
240.0 |
C27 |
C28 |
H8 |
H9 |
120.0 |
120.0 |
H7 |
C28 |
H8 |
H9 |
240.0 |
240.0 |
C27 |
C28 |
H9 |
H7 |
120.0 |
120.0 |
C27 |
C28 |
H9 |
H8 |
240.0 |
240.0 |
H7 |
C28 |
H9 |
H8 |
120.0 |
120.0 |
C27 |
C36 |
H10 |
H11 |
120.0 |
120.0 |
C27 |
C36 |
H10 |
H12 |
240.0 |
240.0 |
H11 |
C36 |
H10 |
H12 |
120.0 |
119.9 |
C27 |
C36 |
H11 |
H10 |
240.0 |
240.0 |
C27 |
C36 |
H11 |
H12 |
120.0 |
120.0 |
H10 |
C36 |
H11 |
H12 |
240.0 |
240.0 |
C27 |
C36 |
H12 |
H10 |
120.0 |
120.0 |
C27 |
C36 |
H12 |
H11 |
240.0 |
240.0 |
H10 |
C36 |
H12 |
H11 |
120.0 |
120.0 |
H14 |
C32 |
H13 |
H15 |
120.0 |
120.0 |
H13 |
C32 |
H14 |
H15 |
240.0 |
240.0 |
H13 |
C32 |
H15 |
H14 |
120.0 |
120.0 |
C17 |
C18 |
H17 |
C19 |
180.0 |
179.9 |
H17 |
C18 |
C19 |
H16 |
359.5 |
359.9 |
C13 |
N15 |
H18 |
C16 |
180.0 |
180.0 |
C6 |
C11 |
H20 |
C10 |
180.0 |
179.8 |
H20 |
C11 |
C10 |
H4 |
0.1 |
0.0 |
N1 |
C2 |
H21 |
N3 |
180.0 |
180.0 |