PDB Chemical Component ILO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ILO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.483 |
1.468 |
| N |
HN1 |
1.020 |
1.009 |
| N |
HN2A |
1.021 |
1.009 |
| CA |
CB |
1.565 |
1.530 |
| CA |
C |
1.527 |
1.506 |
| CA |
HCA |
1.116 |
1.090 |
| CB |
CG |
1.568 |
1.529 |
| CB |
HCB1 |
1.114 |
1.090 |
| CB |
HCB2 |
1.114 |
1.090 |
| CG |
CD |
1.435 |
1.529 |
| CG |
HCG1 |
1.115 |
1.090 |
| CG |
HCG2 |
1.115 |
1.090 |
| CD |
NE |
1.502 |
1.464 |
| CD |
HCD1 |
1.114 |
1.090 |
| CD |
HCD2 |
1.114 |
1.090 |
| NE |
CZ |
1.343 |
1.370 |
| NE |
HNE |
1.019 |
0.970 |
| CZ |
CH1 |
1.437 |
1.507 |
| CZ |
NH2 |
1.279 |
1.293 |
| CH1 |
HC11 |
1.115 |
1.090 |
| CH1 |
HC12 |
1.115 |
1.090 |
| CH1 |
HC13 |
1.115 |
1.090 |
| NH2 |
HN2 |
1.020 |
0.970 |
| C |
OA1 |
1.235 |
1.208 |
| C |
OA2 |
1.249 |
1.342 |
| OA2 |
HO2 |
0.949 |
0.967 |
Bond Angles for ILO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN1 |
108.7 |
106.8 |
| CA |
N |
HN2A |
112.5 |
106.7 |
| N |
CA |
CB |
108.7 |
109.5 |
| N |
CA |
C |
110.3 |
109.5 |
| N |
CA |
HCA |
110.1 |
109.5 |
| HN1 |
N |
HN2A |
112.4 |
106.7 |
| CB |
CA |
C |
111.5 |
109.5 |
| CB |
CA |
HCA |
108.9 |
109.4 |
| CA |
CB |
CG |
115.2 |
109.5 |
| CA |
CB |
HCB1 |
110.1 |
109.5 |
| CA |
CB |
HCB2 |
110.1 |
109.4 |
| C |
CA |
HCA |
107.3 |
109.5 |
| CA |
C |
OA1 |
122.3 |
120.0 |
| CA |
C |
OA2 |
118.3 |
120.0 |
| CG |
CB |
HCB1 |
110.1 |
109.4 |
| CG |
CB |
HCB2 |
110.1 |
109.5 |
| CB |
CG |
CD |
111.0 |
109.6 |
| CB |
CG |
HCG1 |
111.6 |
109.4 |
| CB |
CG |
HCG2 |
111.6 |
109.5 |
| HCB1 |
CB |
HCB2 |
100.2 |
109.5 |
| CD |
CG |
HCG1 |
111.6 |
109.5 |
| CD |
CG |
HCG2 |
111.7 |
109.5 |
| CG |
CD |
NE |
109.4 |
109.6 |
| CG |
CD |
HCD1 |
112.2 |
109.4 |
| CG |
CD |
HCD2 |
112.2 |
109.5 |
| HCG1 |
CG |
HCG2 |
98.7 |
109.4 |
| NE |
CD |
HCD1 |
112.2 |
109.5 |
| NE |
CD |
HCD2 |
112.2 |
109.5 |
| CD |
NE |
CZ |
127.0 |
120.1 |
| CD |
NE |
HNE |
106.0 |
120.0 |
| HCD1 |
CD |
HCD2 |
98.2 |
109.4 |
| CZ |
NE |
HNE |
106.1 |
120.0 |
| NE |
CZ |
CH1 |
125.3 |
120.1 |
| NE |
CZ |
NH2 |
116.8 |
120.0 |
| CH1 |
CZ |
NH2 |
117.9 |
120.0 |
| CZ |
CH1 |
HC11 |
125.3 |
109.5 |
| CZ |
CH1 |
HC12 |
106.6 |
109.5 |
| CZ |
CH1 |
HC13 |
106.6 |
109.4 |
| CZ |
NH2 |
HN2 |
111.4 |
120.0 |
| HC11 |
CH1 |
HC12 |
106.6 |
109.5 |
| HC11 |
CH1 |
HC13 |
106.7 |
109.5 |
| HC12 |
CH1 |
HC13 |
102.9 |
109.4 |
| OA1 |
C |
OA2 |
119.4 |
120.0 |
| C |
OA2 |
HO2 |
118.3 |
120.0 |
Torsion Angles for ILO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N |
CA |
HN2A |
125.2 |
113.8 |
| CB |
CA |
N |
C |
237.5 |
239.9 |
| CB |
CA |
N |
HCA |
119.2 |
120.0 |
| N |
CA |
CB |
CG |
313.3 |
300.0 |
| N |
CA |
CB |
HCB1 |
78.5 |
180.0 |
| N |
CA |
CB |
HCB2 |
188.1 |
60.0 |
| C |
CA |
N |
HCA |
241.7 |
240.0 |
| N |
CA |
C |
OA1 |
359.6 |
330.0 |
| N |
CA |
C |
OA2 |
179.6 |
150.0 |
| CA |
N |
HN1 |
HN2A |
234.7 |
246.2 |
| HN1 |
N |
CA |
CB |
179.9 |
53.7 |
| HN1 |
N |
CA |
C |
302.4 |
173.8 |
| HN1 |
N |
CA |
HCA |
60.7 |
293.8 |
| CA |
N |
HN2A |
HN1 |
123.1 |
113.8 |
| HN2A |
N |
CA |
CB |
54.8 |
300.0 |
| HN2A |
N |
CA |
C |
177.3 |
60.0 |
| HN2A |
N |
CA |
HCA |
295.5 |
180.0 |
| CB |
CA |
N |
HN1 |
179.9 |
53.7 |
| CB |
CA |
N |
HN2A |
54.8 |
300.0 |
| N |
CA |
CB |
C |
121.8 |
120.0 |
| N |
CA |
CB |
HCA |
240.0 |
240.0 |
| C |
CA |
CB |
HCA |
118.3 |
120.0 |
| CB |
CA |
C |
OA1 |
120.4 |
90.0 |
| CB |
CA |
C |
OA2 |
300.5 |
270.0 |
| CG |
CB |
CA |
HCB1 |
234.8 |
120.0 |
| CG |
CB |
CA |
HCB2 |
125.2 |
240.0 |
| CA |
CB |
CG |
CD |
165.3 |
180.0 |
| CA |
CB |
CG |
HCG1 |
290.5 |
60.0 |
| CA |
CB |
CG |
HCG2 |
40.0 |
300.0 |
| HCB1 |
CB |
CA |
HCB2 |
250.4 |
120.0 |
| C |
CA |
N |
HN1 |
302.4 |
173.8 |
| C |
CA |
N |
HN2A |
177.3 |
60.0 |
| N |
CA |
C |
CB |
239.2 |
240.0 |
| N |
CA |
C |
HCA |
119.9 |
120.0 |
| CB |
CA |
C |
HCA |
240.8 |
240.0 |
| C |
CA |
CB |
CG |
191.5 |
180.0 |
| C |
CA |
CB |
HCB1 |
316.7 |
60.0 |
| C |
CA |
CB |
HCB2 |
66.3 |
300.0 |
| OA1 |
C |
CA |
OA2 |
180.0 |
180.0 |
| CA |
C |
OA2 |
HO2 |
180.0 |
180.0 |
| HCA |
CA |
N |
HN1 |
60.7 |
293.8 |
| HCA |
CA |
N |
HN2A |
295.5 |
180.0 |
| N |
CA |
HCA |
CB |
119.1 |
120.0 |
| N |
CA |
HCA |
C |
239.9 |
240.0 |
| CB |
CA |
HCA |
C |
120.8 |
120.0 |
| HCA |
CA |
CB |
CG |
73.2 |
60.0 |
| HCA |
CA |
CB |
HCB1 |
198.5 |
300.0 |
| HCA |
CA |
CB |
HCB2 |
308.0 |
180.0 |
| HCA |
CA |
C |
OA1 |
239.6 |
210.0 |
| HCA |
CA |
C |
OA2 |
59.7 |
30.0 |
| CG |
CB |
CA |
C |
191.5 |
180.0 |
| CG |
CB |
CA |
HCA |
73.2 |
60.0 |
| CA |
CB |
CG |
HCB1 |
125.3 |
240.0 |
| CA |
CB |
CG |
HCB2 |
234.8 |
120.0 |
| HCB1 |
CB |
CG |
HCB2 |
109.5 |
240.0 |
| CD |
CG |
CB |
HCG1 |
234.7 |
120.0 |
| CD |
CG |
CB |
HCG2 |
125.3 |
239.9 |
| CB |
CG |
CD |
NE |
300.0 |
180.0 |
| CB |
CG |
CD |
HCD1 |
65.3 |
60.0 |
| CB |
CG |
CD |
HCD2 |
174.8 |
300.1 |
| HCG1 |
CG |
CB |
HCG2 |
250.6 |
119.9 |
| HCB1 |
CB |
CA |
C |
316.7 |
60.0 |
| HCB1 |
CB |
CA |
HCA |
198.5 |
300.0 |
| CA |
CB |
HCB1 |
CG |
231.9 |
120.1 |
| CA |
CB |
HCB1 |
HCB2 |
116.0 |
240.0 |
| CG |
CB |
HCB1 |
HCB2 |
244.1 |
120.0 |
| HCB1 |
CB |
CG |
CD |
40.0 |
300.0 |
| HCB1 |
CB |
CG |
HCG1 |
165.3 |
180.0 |
| HCB1 |
CB |
CG |
HCG2 |
274.7 |
60.1 |
| HCB2 |
CB |
CA |
C |
66.3 |
300.0 |
| HCB2 |
CB |
CA |
HCA |
308.0 |
180.0 |
| CA |
CB |
HCB2 |
CG |
128.1 |
240.0 |
| CA |
CB |
HCB2 |
HCB1 |
244.0 |
120.0 |
| CG |
CB |
HCB2 |
HCB1 |
115.9 |
240.1 |
| HCB2 |
CB |
CG |
CD |
290.5 |
60.0 |
| HCB2 |
CB |
CG |
HCG1 |
55.8 |
300.0 |
| HCB2 |
CB |
CG |
HCG2 |
165.2 |
180.0 |
| CD |
CG |
CB |
HCB1 |
40.0 |
300.0 |
| CD |
CG |
CB |
HCB2 |
290.5 |
60.0 |
| CB |
CG |
CD |
HCG1 |
125.3 |
240.0 |
| CB |
CG |
CD |
HCG2 |
234.7 |
120.1 |
| HCG1 |
CG |
CD |
HCG2 |
109.5 |
240.1 |
| NE |
CD |
CG |
HCD1 |
234.7 |
120.1 |
| NE |
CD |
CG |
HCD2 |
125.2 |
240.0 |
| CG |
CD |
NE |
CZ |
163.2 |
180.1 |
| CG |
CD |
NE |
HNE |
37.9 |
360.0 |
| HCD1 |
CD |
CG |
HCD2 |
250.5 |
119.9 |
| HCG1 |
CG |
CB |
HCB1 |
165.3 |
180.0 |
| HCG1 |
CG |
CB |
HCB2 |
55.8 |
300.0 |
| CB |
CG |
HCG1 |
CD |
235.1 |
120.1 |
| CB |
CG |
HCG1 |
HCG2 |
117.5 |
240.0 |
| CD |
CG |
HCG1 |
HCG2 |
242.4 |
120.0 |
| HCG1 |
CG |
CD |
NE |
174.7 |
300.0 |
| HCG1 |
CG |
CD |
HCD1 |
300.0 |
180.0 |
| HCG1 |
CG |
CD |
HCD2 |
49.5 |
60.1 |
| HCG2 |
CG |
CB |
HCB1 |
274.7 |
60.1 |
| HCG2 |
CG |
CB |
HCB2 |
165.2 |
180.0 |
| CB |
CG |
HCG2 |
CD |
125.0 |
239.9 |
| CB |
CG |
HCG2 |
HCG1 |
242.5 |
119.9 |
| CD |
CG |
HCG2 |
HCG1 |
117.5 |
240.0 |
| HCG2 |
CG |
CD |
NE |
65.3 |
60.0 |
| HCG2 |
CG |
CD |
HCD1 |
190.5 |
299.9 |
| HCG2 |
CG |
CD |
HCD2 |
300.0 |
180.0 |
| NE |
CD |
CG |
HCG1 |
174.7 |
300.0 |
| NE |
CD |
CG |
HCG2 |
65.3 |
60.0 |
| CG |
CD |
NE |
HCD1 |
125.3 |
240.0 |
| CG |
CD |
NE |
HCD2 |
234.8 |
120.0 |
| HCD1 |
CD |
NE |
HCD2 |
109.5 |
240.1 |
| CZ |
NE |
CD |
HNE |
125.3 |
180.1 |
| CD |
NE |
CZ |
CH1 |
359.0 |
180.0 |
| CD |
NE |
CZ |
NH2 |
179.8 |
359.9 |
| HCD1 |
CD |
CG |
HCG1 |
300.0 |
180.0 |
| HCD1 |
CD |
CG |
HCG2 |
190.5 |
299.9 |
| CG |
CD |
HCD1 |
NE |
236.3 |
120.1 |
| CG |
CD |
HCD1 |
HCD2 |
118.1 |
240.1 |
| NE |
CD |
HCD1 |
HCD2 |
241.8 |
120.0 |
| HCD1 |
CD |
NE |
CZ |
37.9 |
300.1 |
| HCD1 |
CD |
NE |
HNE |
272.6 |
120.0 |
| HCD2 |
CD |
CG |
HCG1 |
49.5 |
60.1 |
| HCD2 |
CD |
CG |
HCG2 |
300.0 |
180.0 |
| CG |
CD |
HCD2 |
NE |
123.7 |
239.9 |
| CG |
CD |
HCD2 |
HCD1 |
241.9 |
119.9 |
| NE |
CD |
HCD2 |
HCD1 |
118.2 |
240.0 |
| HCD2 |
CD |
NE |
CZ |
288.4 |
60.0 |
| HCD2 |
CD |
NE |
HNE |
163.1 |
239.9 |
| CZ |
NE |
CD |
HCD1 |
37.9 |
300.1 |
| CZ |
NE |
CD |
HCD2 |
288.4 |
60.0 |
| CD |
NE |
CZ |
HNE |
234.8 |
179.9 |
| CH1 |
CZ |
NE |
NH2 |
179.2 |
180.0 |
| NE |
CZ |
CH1 |
HC11 |
180.1 |
180.0 |
| NE |
CZ |
CH1 |
HC12 |
305.3 |
300.0 |
| NE |
CZ |
CH1 |
HC13 |
54.7 |
59.9 |
| NE |
CZ |
NH2 |
HN2 |
219.5 |
0.0 |
| HNE |
NE |
CD |
HCD1 |
272.6 |
120.0 |
| HNE |
NE |
CD |
HCD2 |
163.1 |
239.9 |
| CD |
NE |
HNE |
CZ |
137.3 |
180.1 |
| HNE |
NE |
CZ |
CH1 |
124.3 |
0.1 |
| HNE |
NE |
CZ |
NH2 |
305.0 |
180.0 |
| CH1 |
CZ |
NE |
HNE |
124.3 |
0.1 |
| NE |
CZ |
CH1 |
NH2 |
180.8 |
180.0 |
| CH1 |
CZ |
NH2 |
HN2 |
40.2 |
180.0 |
| HC11 |
CH1 |
CZ |
HC12 |
234.7 |
240.0 |
| HC11 |
CH1 |
CZ |
HC13 |
125.3 |
120.1 |
| HC12 |
CH1 |
CZ |
HC13 |
250.6 |
240.1 |
| NH2 |
CZ |
NE |
HNE |
305.0 |
180.0 |
| NE |
CZ |
NH2 |
CH1 |
179.3 |
180.0 |
| NH2 |
CZ |
CH1 |
HC11 |
359.3 |
360.0 |
| NH2 |
CZ |
CH1 |
HC12 |
124.5 |
120.0 |
| NH2 |
CZ |
CH1 |
HC13 |
234.0 |
239.9 |
| HC11 |
CH1 |
CZ |
NH2 |
359.3 |
360.0 |
| CZ |
CH1 |
HC11 |
HC12 |
125.2 |
120.0 |
| CZ |
CH1 |
HC11 |
HC13 |
234.7 |
240.0 |
| HC12 |
CH1 |
HC11 |
HC13 |
109.5 |
120.0 |
| HC12 |
CH1 |
CZ |
NH2 |
124.5 |
120.0 |
| CZ |
CH1 |
HC12 |
HC11 |
224.1 |
239.9 |
| CZ |
CH1 |
HC12 |
HC13 |
112.0 |
119.9 |
| HC11 |
CH1 |
HC12 |
HC13 |
247.9 |
240.0 |
| HC13 |
CH1 |
CZ |
NH2 |
234.0 |
239.9 |
| CZ |
CH1 |
HC13 |
HC11 |
136.0 |
120.1 |
| CZ |
CH1 |
HC13 |
HC12 |
248.0 |
240.1 |
| HC11 |
CH1 |
HC13 |
HC12 |
112.1 |
120.0 |
| OA1 |
C |
CA |
HCA |
239.6 |
210.0 |
| CA |
C |
OA1 |
OA2 |
180.0 |
180.0 |
| OA1 |
C |
OA2 |
HO2 |
0.1 |
0.0 |
| OA2 |
C |
CA |
HCA |
59.7 |
30.0 |
| CA |
C |
OA2 |
OA1 |
180.0 |
180.0 |