Atom Nomenclature for ILB

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ILB

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C7 C7
C8 C8
C9 C9
C11 C11
C13 C13
C15 C15
C16 C16
C19 C19
C20 C20
C21 C21
C22 C22
C27 C27
C4 C4
C5 C5
C6 C6
F10 F10
N12 N12
F14 F14
C17 C17
O18 O18
C23 C23
O24 O24
O25 O25
O26 O26
F28 F28
F29 F29
F30 F30
H1 H1
H2 H2
H7 H7
H8 H8
H15 H15
H201 1H20
H202 2H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
H4 H4
HN12 HN12
HO24 HO24