PDB Chemical Component IIL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IIL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.457 |
1.468 |
| N |
H |
0.980 |
1.008 |
| N |
H2 |
1.020 |
1.008 |
| CA |
C |
1.524 |
1.506 |
| CA |
CB |
1.572 |
1.528 |
| CA |
HA |
1.115 |
1.091 |
| C |
O |
1.235 |
1.207 |
| C |
OXT |
1.335 |
1.342 |
| CB |
CG2 |
1.531 |
1.529 |
| CB |
CG1 |
1.539 |
1.529 |
| CB |
HB |
1.115 |
1.090 |
| CG2 |
HG21 |
1.115 |
1.089 |
| CG2 |
HG22 |
1.115 |
1.090 |
| CG2 |
HG23 |
1.114 |
1.090 |
| CG1 |
CD1 |
1.543 |
1.530 |
| CG1 |
HG12 |
1.116 |
1.090 |
| CG1 |
HG13 |
1.115 |
1.090 |
| CD1 |
HD11 |
1.116 |
1.090 |
| CD1 |
HD12 |
1.115 |
1.091 |
| CD1 |
HD13 |
1.116 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for IIL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
119.0 |
106.7 |
| CA |
N |
H2 |
112.3 |
106.7 |
| N |
CA |
C |
109.0 |
109.5 |
| N |
CA |
CB |
110.1 |
109.5 |
| N |
CA |
HA |
109.9 |
109.4 |
| H |
N |
H2 |
55.3 |
106.7 |
| C |
CA |
CB |
110.9 |
109.5 |
| C |
CA |
HA |
109.0 |
109.5 |
| CA |
C |
O |
120.4 |
120.0 |
| CA |
C |
OXT |
116.3 |
120.0 |
| CB |
CA |
HA |
108.0 |
109.5 |
| CA |
CB |
CG2 |
108.4 |
109.5 |
| CA |
CB |
CG1 |
111.8 |
109.5 |
| CA |
CB |
HB |
108.7 |
109.5 |
| O |
C |
OXT |
123.2 |
120.0 |
| C |
OXT |
HXT |
116.3 |
120.0 |
| CG2 |
CB |
CG1 |
109.5 |
109.4 |
| CG2 |
CB |
HB |
111.0 |
109.5 |
| CB |
CG2 |
HG21 |
108.3 |
109.5 |
| CB |
CG2 |
HG22 |
112.6 |
109.4 |
| CB |
CG2 |
HG23 |
112.6 |
109.5 |
| CG1 |
CB |
HB |
107.5 |
109.4 |
| CB |
CG1 |
CD1 |
118.0 |
109.6 |
| CB |
CG1 |
HG12 |
109.2 |
109.5 |
| CB |
CG1 |
HG13 |
109.2 |
109.5 |
| HG21 |
CG2 |
HG22 |
112.6 |
109.5 |
| HG21 |
CG2 |
HG23 |
112.6 |
109.5 |
| HG22 |
CG2 |
HG23 |
97.9 |
109.4 |
| CD1 |
CG1 |
HG12 |
109.1 |
109.4 |
| CD1 |
CG1 |
HG13 |
109.1 |
109.4 |
| CG1 |
CD1 |
HD11 |
118.0 |
109.6 |
| CG1 |
CD1 |
HD12 |
109.2 |
109.4 |
| CG1 |
CD1 |
HD13 |
109.2 |
109.5 |
| HG12 |
CG1 |
HG13 |
100.9 |
109.4 |
| HD11 |
CD1 |
HD12 |
109.1 |
109.4 |
| HD11 |
CD1 |
HD13 |
109.1 |
109.6 |
| HD12 |
CD1 |
HD13 |
101.0 |
109.4 |
Torsion Angles for IIL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
61.6 |
113.8 |
| C |
CA |
N |
CB |
121.8 |
120.0 |
| C |
CA |
N |
HA |
240.6 |
240.0 |
| N |
CA |
C |
O |
132.1 |
330.0 |
| N |
CA |
C |
OXT |
315.6 |
150.0 |
| CB |
CA |
N |
HA |
118.8 |
120.0 |
| N |
CA |
CB |
CG2 |
291.6 |
60.0 |
| N |
CA |
CB |
CG1 |
170.8 |
300.0 |
| N |
CA |
CB |
HB |
52.3 |
180.0 |
| CA |
N |
H |
H2 |
261.6 |
246.2 |
| H |
N |
CA |
C |
116.3 |
173.8 |
| H |
N |
CA |
CB |
354.4 |
53.8 |
| H |
N |
CA |
HA |
235.7 |
293.8 |
| CA |
N |
H2 |
H |
110.6 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
60.0 |
| H2 |
N |
CA |
CB |
292.8 |
300.0 |
| H2 |
N |
CA |
HA |
174.1 |
180.0 |
| C |
CA |
N |
H |
116.3 |
173.8 |
| C |
CA |
N |
H2 |
54.7 |
60.0 |
| N |
CA |
C |
CB |
238.7 |
240.0 |
| N |
CA |
C |
HA |
120.0 |
120.0 |
| CB |
CA |
C |
HA |
241.3 |
240.0 |
| C |
CA |
CB |
CG2 |
170.8 |
300.0 |
| C |
CA |
CB |
CG1 |
50.1 |
180.0 |
| C |
CA |
CB |
HB |
291.6 |
60.0 |
| O |
C |
CA |
OXT |
176.5 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| CB |
CA |
N |
H |
354.4 |
53.8 |
| CB |
CA |
N |
H2 |
292.8 |
300.0 |
| N |
CA |
CB |
C |
120.7 |
120.0 |
| N |
CA |
CB |
HA |
240.0 |
240.0 |
| C |
CA |
CB |
HA |
119.3 |
120.0 |
| CB |
CA |
C |
O |
253.4 |
90.0 |
| CB |
CA |
C |
OXT |
77.0 |
270.0 |
| CG2 |
CB |
CA |
CG1 |
120.7 |
120.0 |
| CG2 |
CB |
CA |
HB |
239.2 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
300.0 |
| CA |
CB |
CG2 |
HG22 |
305.2 |
60.0 |
| CA |
CB |
CG2 |
HG23 |
54.8 |
179.9 |
| CG1 |
CB |
CA |
HB |
118.5 |
120.0 |
| CA |
CB |
CG1 |
CD1 |
176.5 |
180.1 |
| CA |
CB |
CG1 |
HG12 |
301.8 |
60.0 |
| CA |
CB |
CG1 |
HG13 |
51.2 |
300.1 |
| HA |
CA |
N |
H |
235.7 |
293.8 |
| HA |
CA |
N |
H2 |
174.1 |
180.0 |
| N |
CA |
HA |
C |
240.6 |
240.0 |
| N |
CA |
HA |
CB |
120.1 |
120.0 |
| C |
CA |
HA |
CB |
239.5 |
240.0 |
| HA |
CA |
C |
O |
12.1 |
210.0 |
| HA |
CA |
C |
OXT |
195.7 |
30.0 |
| HA |
CA |
CB |
CG2 |
51.5 |
180.0 |
| HA |
CA |
CB |
CG1 |
290.8 |
60.0 |
| HA |
CA |
CB |
HB |
172.3 |
300.0 |
| O |
C |
CA |
CB |
253.4 |
90.0 |
| O |
C |
CA |
HA |
12.1 |
210.0 |
| CA |
C |
O |
OXT |
183.8 |
180.0 |
| O |
C |
OXT |
HXT |
3.7 |
0.0 |
| OXT |
C |
CA |
CB |
77.0 |
270.0 |
| OXT |
C |
CA |
HA |
195.7 |
30.0 |
| CA |
C |
OXT |
O |
176.4 |
180.0 |
| CG2 |
CB |
CA |
HA |
51.5 |
180.0 |
| CA |
CB |
CG2 |
CG1 |
237.8 |
240.0 |
| CA |
CB |
CG2 |
HB |
119.3 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
241.5 |
240.1 |
| CG2 |
CB |
CG1 |
CD1 |
56.4 |
60.0 |
| CG2 |
CB |
CG1 |
HG12 |
181.7 |
300.0 |
| CG2 |
CB |
CG1 |
HG13 |
291.1 |
180.0 |
| HG21 |
CG2 |
CB |
HG22 |
234.8 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
125.2 |
120.1 |
| HG22 |
CG2 |
CB |
HG23 |
250.5 |
240.1 |
| CG1 |
CB |
CA |
HA |
290.8 |
60.0 |
| CA |
CB |
CG1 |
CG2 |
120.1 |
120.0 |
| CA |
CB |
CG1 |
HB |
240.8 |
240.0 |
| CG2 |
CB |
CG1 |
HB |
120.7 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
302.2 |
60.1 |
| CG1 |
CB |
CG2 |
HG22 |
67.4 |
180.1 |
| CG1 |
CB |
CG2 |
HG23 |
176.9 |
300.0 |
| CD1 |
CG1 |
CB |
HG12 |
234.8 |
120.0 |
| CD1 |
CG1 |
CB |
HG13 |
125.3 |
240.0 |
| CB |
CG1 |
CD1 |
HD11 |
180.0 |
180.1 |
| CB |
CG1 |
CD1 |
HD12 |
305.2 |
300.0 |
| CB |
CG1 |
CD1 |
HD13 |
54.8 |
59.9 |
| HG12 |
CG1 |
CB |
HG13 |
250.5 |
120.0 |
| HB |
CB |
CA |
HA |
172.3 |
300.0 |
| CA |
CB |
HB |
CG2 |
240.9 |
240.0 |
| CA |
CB |
HB |
CG1 |
121.2 |
120.0 |
| CG2 |
CB |
HB |
CG1 |
240.3 |
240.1 |
| HB |
CB |
CG2 |
HG21 |
60.7 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
185.9 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
295.5 |
59.9 |
| HB |
CB |
CG1 |
CD1 |
295.7 |
300.0 |
| HB |
CB |
CG1 |
HG12 |
61.0 |
180.0 |
| HB |
CB |
CG1 |
HG13 |
170.4 |
60.0 |
| HG21 |
CG2 |
CB |
CG1 |
302.2 |
60.1 |
| HG21 |
CG2 |
CB |
HB |
60.7 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
125.2 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
234.8 |
239.9 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.5 |
119.9 |
| HG22 |
CG2 |
CB |
CG1 |
67.4 |
180.1 |
| HG22 |
CG2 |
CB |
HB |
185.9 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
237.1 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
118.5 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
241.4 |
240.0 |
| HG23 |
CG2 |
CB |
CG1 |
176.9 |
300.0 |
| HG23 |
CG2 |
CB |
HB |
295.5 |
59.9 |
| CB |
CG2 |
HG23 |
HG21 |
122.9 |
120.1 |
| CB |
CG2 |
HG23 |
HG22 |
241.4 |
240.1 |
| HG21 |
CG2 |
HG23 |
HG22 |
118.6 |
120.0 |
| CD1 |
CG1 |
CB |
HB |
295.7 |
300.0 |
| CB |
CG1 |
CD1 |
HG12 |
125.3 |
240.0 |
| CB |
CG1 |
CD1 |
HG13 |
234.7 |
120.1 |
| HG12 |
CG1 |
CD1 |
HG13 |
109.4 |
240.1 |
| HD11 |
CD1 |
CG1 |
HD12 |
234.8 |
240.1 |
| HD11 |
CD1 |
CG1 |
HD13 |
125.2 |
120.2 |
| HD12 |
CD1 |
CG1 |
HD13 |
250.5 |
240.1 |
| HG12 |
CG1 |
CB |
HB |
61.0 |
180.0 |
| CB |
CG1 |
HG12 |
CD1 |
229.8 |
120.1 |
| CB |
CG1 |
HG12 |
HG13 |
114.9 |
240.0 |
| CD1 |
CG1 |
HG12 |
HG13 |
245.1 |
119.9 |
| HG12 |
CG1 |
CD1 |
HD11 |
54.7 |
300.1 |
| HG12 |
CG1 |
CD1 |
HD12 |
180.0 |
60.0 |
| HG12 |
CG1 |
CD1 |
HD13 |
289.5 |
180.0 |
| HG13 |
CG1 |
CB |
HB |
170.4 |
60.0 |
| CB |
CG1 |
HG13 |
CD1 |
130.3 |
239.9 |
| CB |
CG1 |
HG13 |
HG12 |
245.1 |
120.0 |
| CD1 |
CG1 |
HG13 |
HG12 |
114.8 |
240.1 |
| HG13 |
CG1 |
CD1 |
HD11 |
305.3 |
60.0 |
| HG13 |
CG1 |
CD1 |
HD12 |
70.6 |
179.9 |
| HG13 |
CG1 |
CD1 |
HD13 |
180.1 |
299.8 |
| HD11 |
CD1 |
CG1 |
HG12 |
54.7 |
300.1 |
| HD11 |
CD1 |
CG1 |
HG13 |
305.3 |
60.0 |
| CG1 |
CD1 |
HD11 |
HD12 |
125.3 |
119.9 |
| CG1 |
CD1 |
HD11 |
HD13 |
234.7 |
239.9 |
| HD12 |
CD1 |
HD11 |
HD13 |
109.5 |
120.0 |
| HD12 |
CD1 |
CG1 |
HG12 |
180.0 |
60.0 |
| HD12 |
CD1 |
CG1 |
HG13 |
70.6 |
179.9 |
| CG1 |
CD1 |
HD12 |
HD11 |
229.8 |
240.0 |
| CG1 |
CD1 |
HD12 |
HD13 |
114.9 |
119.9 |
| HD11 |
CD1 |
HD12 |
HD13 |
245.2 |
240.0 |
| HD13 |
CD1 |
CG1 |
HG12 |
289.5 |
180.0 |
| HD13 |
CD1 |
CG1 |
HG13 |
180.1 |
299.8 |
| CG1 |
CD1 |
HD13 |
HD11 |
130.2 |
120.1 |
| CG1 |
CD1 |
HD13 |
HD12 |
245.1 |
240.1 |
| HD11 |
CD1 |
HD13 |
HD12 |
114.8 |
120.0 |