Atom Nomenclature for IH5

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for IH5

Atom Name (V3) Atom Name (V2)
O3 O3
C15 C15
O4 O4
C13 C13
C01 C01
C11 C11
C09 C09
C07 C07
O2 O2
C2 C2
C12 C12
C10 C10
C8 C8
O1 O1
C6 C6
C4 C4
C14 C14
C16 C16
C18 C18
C05 C05
C03 C03
CL5 CL5
CL6 CL6
HO3 HO3
H131 H131
H132 H132
H11 H11
H12 H12
H10 H10
HO1 HO1
H4 H4
H14 H14
H161 H161
H162 H162
H163 H163
H181 H181
H182 H182
H183 H183
H03 H03