PDB Chemical Component IGL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IGL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.449 |
1.468 |
| N |
H |
0.974 |
1.010 |
| N |
H2 |
1.020 |
1.008 |
| CA |
C |
1.514 |
1.507 |
| CA |
CB |
1.577 |
1.529 |
| CA |
HA |
1.096 |
1.090 |
| C |
O |
1.253 |
1.208 |
| C |
OXT |
1.377 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
| CB |
CG1 |
1.557 |
1.543 |
| CB |
CG2 |
1.550 |
1.542 |
| CB |
HB |
1.099 |
1.090 |
| CG1 |
CD1 |
1.465 |
1.514 |
| CG1 |
HG12 |
1.091 |
1.089 |
| CG1 |
HG13 |
1.098 |
1.090 |
| CG2 |
CD2 |
1.459 |
1.514 |
| CG2 |
HG22 |
1.093 |
1.090 |
| CG2 |
HG23 |
1.082 |
1.089 |
| CD1 |
CE1 |
1.406 |
1.385 |
| CD1 |
CD2 |
1.392 |
1.381 |
| CE1 |
CH1 |
1.413 |
1.381 |
| CE1 |
HE1 |
1.022 |
1.080 |
| CH1 |
CH2 |
1.411 |
1.381 |
| CH1 |
HH1 |
1.025 |
1.080 |
| CH2 |
CE2 |
1.413 |
1.381 |
| CH2 |
HH2 |
1.023 |
1.080 |
| CE2 |
CD2 |
1.408 |
1.385 |
| CE2 |
HE2 |
1.024 |
1.081 |
Bond Angles for IGL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
116.6 |
106.7 |
| CA |
N |
H2 |
112.0 |
106.8 |
| N |
CA |
C |
109.9 |
109.4 |
| N |
CA |
CB |
102.9 |
109.5 |
| N |
CA |
HA |
110.3 |
109.5 |
| H |
N |
H2 |
119.7 |
106.7 |
| C |
CA |
CB |
117.3 |
109.5 |
| C |
CA |
HA |
106.5 |
109.4 |
| CA |
C |
O |
117.4 |
120.0 |
| CA |
C |
OXT |
127.7 |
120.0 |
| CB |
CA |
HA |
110.0 |
109.5 |
| CA |
CB |
CG1 |
111.9 |
110.8 |
| CA |
CB |
CG2 |
117.0 |
110.9 |
| CA |
CB |
HB |
108.6 |
110.7 |
| O |
C |
OXT |
114.6 |
120.0 |
| C |
OXT |
HXT |
127.6 |
120.0 |
| CG1 |
CB |
CG2 |
103.1 |
102.5 |
| CG1 |
CB |
HB |
108.9 |
110.8 |
| CB |
CG1 |
CD1 |
103.3 |
105.1 |
| CB |
CG1 |
HG12 |
112.6 |
110.4 |
| CB |
CG1 |
HG13 |
111.1 |
110.3 |
| CG2 |
CB |
HB |
107.0 |
111.0 |
| CB |
CG2 |
CD2 |
104.5 |
105.2 |
| CB |
CG2 |
HG22 |
111.7 |
110.3 |
| CB |
CG2 |
HG23 |
112.4 |
110.4 |
| CD1 |
CG1 |
HG12 |
111.7 |
110.4 |
| CD1 |
CG1 |
HG13 |
108.9 |
110.3 |
| CG1 |
CD1 |
CE1 |
128.5 |
130.3 |
| CG1 |
CD1 |
CD2 |
111.1 |
109.7 |
| HG12 |
CG1 |
HG13 |
109.0 |
110.3 |
| CD2 |
CG2 |
HG22 |
107.5 |
110.2 |
| CD2 |
CG2 |
HG23 |
112.6 |
110.2 |
| CG2 |
CD2 |
CD1 |
110.6 |
109.8 |
| CG2 |
CD2 |
CE2 |
128.2 |
130.4 |
| HG22 |
CG2 |
HG23 |
108.2 |
110.4 |
| CE1 |
CD1 |
CD2 |
120.4 |
119.9 |
| CD1 |
CE1 |
CH1 |
119.2 |
120.2 |
| CD1 |
CE1 |
HE1 |
120.0 |
119.9 |
| CD1 |
CD2 |
CE2 |
121.2 |
119.8 |
| CH1 |
CE1 |
HE1 |
120.8 |
119.9 |
| CE1 |
CH1 |
CH2 |
120.2 |
119.9 |
| CE1 |
CH1 |
HH1 |
120.2 |
120.0 |
| CH2 |
CH1 |
HH1 |
119.6 |
120.1 |
| CH1 |
CH2 |
CE2 |
120.3 |
120.0 |
| CH1 |
CH2 |
HH2 |
119.6 |
120.0 |
| CE2 |
CH2 |
HH2 |
120.1 |
120.0 |
| CH2 |
CE2 |
CD2 |
118.7 |
120.2 |
| CH2 |
CE2 |
HE2 |
121.0 |
119.9 |
| CD2 |
CE2 |
HE2 |
120.3 |
119.8 |
Torsion Angles for IGL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
216.8 |
113.8 |
| C |
CA |
N |
CB |
234.3 |
240.0 |
| C |
CA |
N |
HA |
117.1 |
119.9 |
| N |
CA |
C |
O |
16.5 |
30.0 |
| N |
CA |
C |
OXT |
202.9 |
209.9 |
| CB |
CA |
N |
HA |
242.7 |
240.0 |
| N |
CA |
CB |
CG1 |
82.3 |
59.9 |
| N |
CA |
CB |
CG2 |
200.9 |
173.0 |
| N |
CA |
CB |
HB |
322.1 |
296.6 |
| CA |
N |
H |
H2 |
140.3 |
246.2 |
| H |
N |
CA |
C |
271.6 |
53.8 |
| H |
N |
CA |
CB |
37.2 |
173.8 |
| H |
N |
CA |
HA |
154.5 |
293.8 |
| CA |
N |
H2 |
H |
218.0 |
113.8 |
| H2 |
N |
CA |
C |
54.8 |
300.0 |
| H2 |
N |
CA |
CB |
180.4 |
60.0 |
| H2 |
N |
CA |
HA |
297.7 |
180.0 |
| C |
CA |
N |
H |
271.6 |
53.8 |
| C |
CA |
N |
H2 |
54.8 |
300.0 |
| N |
CA |
C |
CB |
117.0 |
120.1 |
| N |
CA |
C |
HA |
240.5 |
240.0 |
| CB |
CA |
C |
HA |
123.6 |
120.0 |
| C |
CA |
CB |
CG1 |
203.0 |
179.9 |
| C |
CA |
CB |
CG2 |
321.6 |
293.0 |
| C |
CA |
CB |
HB |
82.8 |
56.6 |
| O |
C |
CA |
OXT |
173.6 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| CB |
CA |
N |
H |
37.2 |
173.8 |
| CB |
CA |
N |
H2 |
180.4 |
60.0 |
| N |
CA |
CB |
C |
239.3 |
240.0 |
| N |
CA |
CB |
HA |
117.5 |
120.0 |
| C |
CA |
CB |
HA |
238.2 |
240.0 |
| CB |
CA |
C |
O |
259.5 |
270.0 |
| CB |
CA |
C |
OXT |
85.9 |
89.9 |
| CG1 |
CB |
CA |
CG2 |
241.4 |
246.9 |
| CG1 |
CB |
CA |
HB |
120.2 |
123.3 |
| CA |
CB |
CG1 |
CD1 |
100.4 |
144.6 |
| CA |
CB |
CG1 |
HG12 |
339.6 |
263.6 |
| CA |
CB |
CG1 |
HG13 |
217.0 |
25.7 |
| CG2 |
CB |
CA |
HB |
238.8 |
236.4 |
| CA |
CB |
CG2 |
CD2 |
261.8 |
215.4 |
| CA |
CB |
CG2 |
HG22 |
146.0 |
334.2 |
| CA |
CB |
CG2 |
HG23 |
24.2 |
96.5 |
| HA |
CA |
N |
H |
154.5 |
293.8 |
| HA |
CA |
N |
H2 |
297.7 |
180.0 |
| N |
CA |
HA |
C |
119.2 |
119.9 |
| N |
CA |
HA |
CB |
247.2 |
239.9 |
| C |
CA |
HA |
CB |
128.0 |
120.0 |
| HA |
CA |
C |
O |
136.0 |
150.0 |
| HA |
CA |
C |
OXT |
322.3 |
329.9 |
| HA |
CA |
CB |
CG1 |
324.8 |
299.9 |
| HA |
CA |
CB |
CG2 |
83.4 |
53.0 |
| HA |
CA |
CB |
HB |
204.6 |
176.6 |
| O |
C |
CA |
CB |
259.5 |
270.0 |
| O |
C |
CA |
HA |
136.0 |
150.0 |
| CA |
C |
O |
OXT |
185.6 |
179.9 |
| O |
C |
OXT |
HXT |
6.3 |
360.0 |
| OXT |
C |
CA |
CB |
85.9 |
89.9 |
| OXT |
C |
CA |
HA |
322.3 |
329.9 |
| CA |
C |
OXT |
O |
173.8 |
180.1 |
| CG1 |
CB |
CA |
HA |
324.8 |
299.9 |
| CA |
CB |
CG1 |
CG2 |
126.6 |
118.3 |
| CA |
CB |
CG1 |
HB |
239.9 |
236.7 |
| CG2 |
CB |
CG1 |
HB |
113.4 |
118.4 |
| CG1 |
CB |
CG2 |
CD2 |
25.1 |
333.7 |
| CG1 |
CB |
CG2 |
HG22 |
269.2 |
92.5 |
| CG1 |
CB |
CG2 |
HG23 |
147.4 |
214.8 |
| CD1 |
CG1 |
CB |
HG12 |
120.7 |
241.0 |
| CD1 |
CG1 |
CB |
HG13 |
243.4 |
118.9 |
| CB |
CG1 |
CD1 |
CE1 |
196.0 |
162.8 |
| CB |
CG1 |
CD1 |
CD2 |
18.7 |
342.9 |
| HG12 |
CG1 |
CB |
HG13 |
122.6 |
237.9 |
| CG2 |
CB |
CA |
HA |
83.4 |
53.0 |
| CA |
CB |
CG2 |
CG1 |
236.8 |
241.7 |
| CA |
CB |
CG2 |
HB |
122.0 |
123.4 |
| CG1 |
CB |
CG2 |
HB |
245.3 |
241.7 |
| CG2 |
CB |
CG1 |
CD1 |
333.8 |
26.3 |
| CG2 |
CB |
CG1 |
HG12 |
213.0 |
145.3 |
| CG2 |
CB |
CG1 |
HG13 |
90.4 |
267.4 |
| CD2 |
CG2 |
CB |
HG22 |
115.9 |
241.2 |
| CD2 |
CG2 |
CB |
HG23 |
237.6 |
118.9 |
| CB |
CG2 |
CD2 |
CD1 |
345.2 |
17.1 |
| CB |
CG2 |
CD2 |
CE2 |
166.5 |
197.2 |
| HG22 |
CG2 |
CB |
HG23 |
121.8 |
237.7 |
| HB |
CB |
CA |
HA |
204.6 |
176.6 |
| CA |
CB |
HB |
CG1 |
122.1 |
123.3 |
| CA |
CB |
HB |
CG2 |
232.8 |
236.5 |
| CG1 |
CB |
HB |
CG2 |
110.8 |
113.1 |
| HB |
CB |
CG1 |
CD1 |
220.4 |
267.9 |
| HB |
CB |
CG1 |
HG12 |
99.7 |
26.9 |
| HB |
CB |
CG1 |
HG13 |
337.0 |
149.0 |
| HB |
CB |
CG2 |
CD2 |
139.8 |
92.0 |
| HB |
CB |
CG2 |
HG22 |
23.9 |
210.8 |
| HB |
CB |
CG2 |
HG23 |
262.2 |
333.1 |
| CD1 |
CG1 |
CB |
CG2 |
333.8 |
26.3 |
| CD1 |
CG1 |
CB |
HB |
220.4 |
267.9 |
| CB |
CG1 |
CD1 |
HG12 |
238.6 |
119.0 |
| CB |
CG1 |
CD1 |
HG13 |
118.2 |
241.2 |
| HG12 |
CG1 |
CD1 |
HG13 |
239.6 |
122.2 |
| CG2 |
CD2 |
CD1 |
CG1 |
357.4 |
0.0 |
| CE1 |
CD1 |
CG1 |
CD2 |
177.4 |
180.0 |
| CG1 |
CD1 |
CE1 |
CH1 |
183.5 |
180.0 |
| CG1 |
CD1 |
CE1 |
HE1 |
1.6 |
360.0 |
| CG1 |
CD1 |
CD2 |
CE2 |
176.2 |
180.0 |
| HG12 |
CG1 |
CB |
CG2 |
213.0 |
145.3 |
| HG12 |
CG1 |
CB |
HB |
99.7 |
26.9 |
| CB |
CG1 |
HG12 |
CD1 |
115.8 |
244.2 |
| CB |
CG1 |
HG12 |
HG13 |
236.2 |
122.1 |
| CD1 |
CG1 |
HG12 |
HG13 |
120.4 |
237.8 |
| HG12 |
CG1 |
CD1 |
CE1 |
317.4 |
43.9 |
| HG12 |
CG1 |
CD1 |
CD2 |
140.0 |
223.9 |
| HG13 |
CG1 |
CB |
CG2 |
90.4 |
267.4 |
| HG13 |
CG1 |
CB |
HB |
337.0 |
149.0 |
| CB |
CG1 |
HG13 |
CD1 |
246.8 |
115.7 |
| CB |
CG1 |
HG13 |
HG12 |
124.7 |
237.9 |
| CD1 |
CG1 |
HG13 |
HG12 |
237.9 |
122.2 |
| HG13 |
CG1 |
CD1 |
CE1 |
77.8 |
281.7 |
| HG13 |
CG1 |
CD1 |
CD2 |
260.5 |
101.7 |
| CD2 |
CG2 |
CB |
HB |
139.8 |
92.0 |
| CB |
CG2 |
CD2 |
HG22 |
241.3 |
118.9 |
| CB |
CG2 |
CD2 |
HG23 |
122.2 |
241.0 |
| CG1 |
CD1 |
CD2 |
CG2 |
357.4 |
0.0 |
| HG22 |
CG2 |
CD2 |
HG23 |
241.0 |
122.1 |
| CE1 |
CD1 |
CD2 |
CG2 |
179.8 |
180.0 |
| CD1 |
CD2 |
CG2 |
CE2 |
178.7 |
180.0 |
| CH2 |
CE2 |
CD2 |
CG2 |
180.1 |
180.0 |
| CG2 |
CD2 |
CE2 |
HE2 |
0.6 |
360.0 |
| HG22 |
CG2 |
CB |
HB |
23.9 |
210.8 |
| CB |
CG2 |
HG22 |
CD2 |
114.0 |
244.3 |
| CB |
CG2 |
HG22 |
HG23 |
235.8 |
122.3 |
| CD2 |
CG2 |
HG22 |
HG23 |
121.8 |
238.0 |
| HG22 |
CG2 |
CD2 |
CD1 |
103.9 |
258.3 |
| HG22 |
CG2 |
CD2 |
CE2 |
285.2 |
78.3 |
| HG23 |
CG2 |
CB |
HB |
262.2 |
333.1 |
| CB |
CG2 |
HG23 |
CD2 |
242.4 |
115.7 |
| CB |
CG2 |
HG23 |
HG22 |
123.7 |
237.7 |
| CD2 |
CG2 |
HG23 |
HG22 |
241.4 |
122.0 |
| HG23 |
CG2 |
CD2 |
CD1 |
222.9 |
136.1 |
| HG23 |
CG2 |
CD2 |
CE2 |
44.2 |
316.1 |
| CE1 |
CD1 |
CG1 |
HG12 |
317.4 |
43.9 |
| CE1 |
CD1 |
CG1 |
HG13 |
77.8 |
281.7 |
| CG1 |
CD1 |
CE1 |
CD2 |
182.8 |
180.0 |
| CG2 |
CD2 |
CD1 |
CE1 |
179.8 |
180.0 |
| CE1 |
CD1 |
CD2 |
CE2 |
358.6 |
360.0 |
| CH1 |
CE1 |
CD1 |
HE1 |
181.9 |
180.0 |
| CD1 |
CE1 |
CH1 |
CH2 |
359.8 |
0.1 |
| CD1 |
CE1 |
CH1 |
HH1 |
178.5 |
179.9 |
| CD2 |
CD1 |
CG1 |
HG12 |
140.0 |
223.9 |
| CD2 |
CD1 |
CG1 |
HG13 |
260.5 |
101.7 |
| CG1 |
CD1 |
CD2 |
CE1 |
177.6 |
180.0 |
| CD1 |
CD2 |
CG2 |
HG22 |
103.9 |
258.3 |
| CD1 |
CD2 |
CG2 |
HG23 |
222.9 |
136.1 |
| CG2 |
CD2 |
CD1 |
CE2 |
181.2 |
180.0 |
| CD2 |
CD1 |
CE1 |
CH1 |
0.7 |
360.0 |
| CD2 |
CD1 |
CE1 |
HE1 |
178.8 |
179.9 |
| CH2 |
CE2 |
CD2 |
CD1 |
1.6 |
360.0 |
| CD1 |
CD2 |
CE2 |
HE2 |
182.0 |
180.0 |
| CH1 |
CE1 |
CD1 |
CD2 |
0.7 |
360.0 |
| CD1 |
CE1 |
CH1 |
HE1 |
178.1 |
180.0 |
| CH2 |
CH1 |
CE1 |
HH1 |
181.3 |
180.1 |
| CE1 |
CH1 |
CH2 |
CE2 |
0.4 |
359.9 |
| CE1 |
CH1 |
CH2 |
HH2 |
179.9 |
180.0 |
| HE1 |
CE1 |
CD1 |
CD2 |
178.8 |
179.9 |
| CD1 |
CE1 |
HE1 |
CH1 |
182.0 |
180.0 |
| HE1 |
CE1 |
CH1 |
CH2 |
181.7 |
180.1 |
| HE1 |
CE1 |
CH1 |
HH1 |
0.4 |
360.0 |
| CH2 |
CH1 |
CE1 |
HE1 |
181.7 |
180.1 |
| CE1 |
CH1 |
CH2 |
HH1 |
178.7 |
179.9 |
| CE2 |
CH2 |
CH1 |
HH2 |
180.6 |
179.9 |
| CH1 |
CH2 |
CE2 |
CD2 |
358.9 |
0.1 |
| CH1 |
CH2 |
CE2 |
HE2 |
178.5 |
180.0 |
| HH1 |
CH1 |
CE1 |
HE1 |
0.4 |
360.0 |
| CE1 |
CH1 |
HH1 |
CH2 |
181.3 |
180.1 |
| HH1 |
CH1 |
CH2 |
CE2 |
181.7 |
180.1 |
| HH1 |
CH1 |
CH2 |
HH2 |
1.2 |
0.1 |
| CG2 |
CD2 |
CE2 |
CH2 |
180.1 |
180.0 |
| CD1 |
CD2 |
CE2 |
CH2 |
1.6 |
360.0 |
| CE2 |
CH2 |
CH1 |
HH1 |
181.7 |
180.1 |
| CH1 |
CH2 |
CE2 |
HH2 |
179.4 |
180.1 |
| CD2 |
CE2 |
CH2 |
HE2 |
180.4 |
180.0 |
| HH2 |
CH2 |
CH1 |
HH1 |
1.2 |
0.1 |
| CH1 |
CH2 |
HH2 |
CE2 |
180.6 |
179.9 |
| HH2 |
CH2 |
CE2 |
CD2 |
179.5 |
180.0 |
| HH2 |
CH2 |
CE2 |
HE2 |
359.0 |
360.0 |
| CE2 |
CD2 |
CG2 |
HG22 |
285.2 |
78.3 |
| CE2 |
CD2 |
CG2 |
HG23 |
44.2 |
316.1 |
| CG2 |
CD2 |
CE2 |
CD1 |
178.5 |
180.0 |
| CD2 |
CE2 |
CH2 |
HH2 |
179.5 |
180.0 |
| CH2 |
CE2 |
CD2 |
HE2 |
179.6 |
180.0 |
| HE2 |
CE2 |
CH2 |
HH2 |
359.0 |
360.0 |
| CH2 |
CE2 |
HE2 |
CD2 |
180.4 |
180.0 |