PDB Chemical Component IG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.479 1.480
P OP2 1.481 1.610
P OP3 1.611 1.610
P O5' 1.610 1.610
OP2 HOP2 0.951 0.966
OP3 HOP3 0.951 0.967
O5' C5' 1.417 1.429
O3' C3' 1.419 1.429
O3' HO3' 0.950 0.967
C1' C2' 1.526 1.544
C1' O4' 1.422 1.443
C1' N9 1.480 1.465
C1' H1' 1.091 1.090
C2' C3' 1.527 1.546
C2' O2' 1.416 1.429
C2' H2' 1.089 1.090
C3' C4' 1.529 1.545
C3' H3' 1.091 1.089
C4' C5' 1.531 1.530
C4' O4' 1.423 1.444
C4' H4' 1.091 1.090
C5' H5' 1.091 1.090
C5' H5'' 1.091 1.090
O2' HO2' 0.963 0.968
N6 C6 1.333 1.368
N6 H61 1.008 0.970
N6 H62 1.019 0.970
O2 C2 1.226 1.221
C6 C5 1.412 1.397
C6 N1 1.377 1.365
C5 N7 1.393 1.359
C5 C4 1.372 1.409
N7 C8 1.305 1.300
C8 N9 1.374 1.366
C8 H8 1.080 1.080
N9 C4 1.373 1.369
C4 N3 1.363 1.329
N3 C2 1.366 1.327
C2 N1 1.387 1.345
N1 H1 1.010 0.969

Bond Angles for IG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.2 109.5
OP1 P OP3 108.2 109.5
OP1 P O5' 109.2 109.4
OP2 P OP3 108.4 109.5
OP2 P O5' 109.0 109.5
P OP2 HOP2 120.3 106.8
OP3 P O5' 99.8 109.5
P OP3 HOP3 108.2 106.8
P O5' C5' 120.8 106.8
O5' C5' C4' 111.6 109.5
O5' C5' H5' 109.6 109.5
O5' C5' H5'' 109.1 109.5
C3' O3' HO3' 111.8 106.8
O3' C3' C2' 111.8 110.6
O3' C3' C4' 112.6 110.5
O3' C3' H3' 111.8 110.5
C2' C1' O4' 107.1 104.9
C2' C1' N9 111.1 110.4
C2' C1' H1' 109.1 110.4
C1' C2' C3' 102.4 104.0
C1' C2' O2' 108.5 110.8
C1' C2' H2' 112.1 110.5
O4' C1' N9 110.4 110.3
O4' C1' H1' 110.4 110.4
C1' O4' C4' 109.0 105.3
N9 C1' H1' 108.7 110.3
C1' N9 C8 129.4 126.2
C1' N9 C4 125.5 126.2
C3' C2' O2' 111.1 110.5
C3' C2' H2' 111.6 110.5
C2' C3' C4' 100.0 104.0
C2' C3' H3' 110.1 110.6
O2' C2' H2' 110.7 110.4
C2' O2' HO2' 106.8 106.8
C4' C3' H3' 110.0 110.5
C3' C4' C5' 114.6 110.5
C3' C4' O4' 106.8 104.8
C3' C4' H4' 108.0 110.3
C5' C4' O4' 110.7 110.4
C5' C4' H4' 108.5 110.3
C4' C5' H5' 108.2 109.5
C4' C5' H5'' 109.5 109.4
O4' C4' H4' 107.8 110.4
H5' C5' H5'' 108.7 109.5
C6 N6 H61 119.2 120.0
C6 N6 H62 121.1 120.0
N6 C6 C5 124.5 120.8
N6 C6 N1 115.6 120.7
H61 N6 H62 119.7 119.9
O2 C2 N3 123.1 119.1
O2 C2 N1 119.8 119.0
C5 C6 N1 119.9 118.4
C6 C5 N7 134.4 134.3
C6 C5 C4 114.9 118.6
C6 N1 C2 123.0 120.4
C6 N1 H1 119.2 119.8
N7 C5 C4 110.7 107.1
C5 N7 C8 103.3 109.4
C5 C4 N9 106.4 106.0
C5 C4 N3 125.3 119.6
N7 C8 N9 114.5 110.0
N7 C8 H8 122.6 125.0
N9 C8 H8 122.8 125.0
C8 N9 C4 105.0 107.6
N9 C4 N3 128.2 134.4
C4 N3 C2 119.8 121.0
N3 C2 N1 117.1 121.9
C2 N1 H1 117.8 119.8

Torsion Angles for IG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 125.2 120.0
OP2 P OP1 O5' 232.9 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 107.7 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 33.9 60.0
OP1 P OP2 OP3 234.9 240.0
OP1 P OP2 O5' 127.2 120.0
OP3 P OP2 O5' 252.3 240.0
OP2 P OP3 HOP3 48.0 59.9
OP2 P O5' C5' 167.1 180.0
OP1 P OP3 OP2 132.0 120.0
OP1 P OP3 O5' 245.9 240.0
OP2 P OP3 O5' 114.0 120.0
OP3 P OP2 HOP2 305.1 60.1
OP3 P O5' C5' 280.6 300.0
OP1 P O5' OP2 226.8 240.0
OP1 P O5' OP3 113.3 120.0
OP2 P O5' OP3 246.5 240.0
O5' P OP2 HOP2 52.8 180.1
O5' P OP3 HOP3 294.0 300.0
P O5' C5' C4' 158.1 180.0
P O5' C5' H5' 38.2 60.0
P O5' C5' H5'' 279.3 300.0
HOP2 OP2 P OP3 305.1 60.1
HOP2 OP2 P O5' 52.8 180.1
HOP3 OP3 P O5' 294.0 300.0
C3' C4' C5' O5' 56.1 176.9
O5' C5' C4' O4' 295.2 61.5
O5' C5' C4' H4' 177.0 299.2
C4' C5' O5' H5' 119.9 120.0
C4' C5' O5' H5'' 238.8 240.0
H5' C5' O5' H5'' 118.9 120.0
C1' C2' C3' O3' 155.8 118.8
O3' C3' C2' O2' 40.1 359.8
O3' C3' C2' H2' 275.9 237.3
C2' C3' O3' C4' 248.4 245.4
C2' C3' O3' H3' 123.9 122.8
C4' C3' O3' H3' 235.6 237.4
O3' C3' C4' C5' 83.0 98.3
O3' C3' C4' O4' 206.1 217.2
O3' C3' C4' H4' 321.9 336.1
HO3' O3' C3' C2' 180.0 65.3
HO3' O3' C3' C4' 291.6 180.0
HO3' O3' C3' H3' 56.0 302.6
O3' C3' C2' C1' 155.8 118.8
O4' C1' C2' N9 239.4 241.2
O4' C1' C2' H1' 119.6 119.0
C2' C1' O4' C4' 5.1 319.5
N9 C1' C2' H1' 240.1 237.8
C2' C1' N9 C8 258.7 301.6
C2' C1' N9 C4 81.4 121.5
C3' C2' C1' O2' 242.4 241.2
C3' C2' C1' H2' 119.8 118.6
C1' C2' C3' C4' 36.4 0.1
C1' C2' C3' H3' 280.7 241.5
O2' C2' C1' H2' 237.3 237.4
C1' C2' O2' HO2' 205.2 183.9
C2' C1' O4' N9 121.1 118.9
C2' C1' O4' H1' 241.3 241.1
O4' C1' C2' C3' 332.9 23.9
O4' C1' C2' O2' 90.5 142.7
O4' C1' C2' H2' 213.1 265.3
N9 C1' O4' H1' 120.2 122.2
O4' C1' N9 C8 17.4 57.1
O4' C1' N9 C4 200.1 237.0
C3' C4' O4' C1' 19.3 40.5
C5' C4' O4' C1' 144.8 159.5
C1' O4' C4' H4' 263.4 281.7
C2' C1' N9 O4' 241.3 244.5
C2' C1' N9 H1' 120.1 122.2
N9 C1' C2' C3' 93.5 142.7
N9 C1' C2' O2' 211.1 261.5
N9 C1' C2' H2' 333.7 24.1
O4' C1' N9 H1' 238.7 237.7
N9 C1' O4' C4' 244.0 200.6
C5 C4 N9 C1' 176.0 180.0
N7 C8 N9 C1' 184.3 180.0
C1' N9 C8 H8 2.3 359.9
C8 N9 C1' C4 177.3 180.1
C1' N9 C4 N3 356.4 0.1
C2' C1' H1' O4' 117.5 115.5
C2' C1' H1' N9 238.7 237.7
H1' C1' C2' C3' 213.4 264.9
H1' C1' C2' O2' 330.9 23.7
H1' C1' C2' H2' 93.6 146.3
O4' C1' H1' N9 121.2 122.2
H1' C1' O4' C4' 123.8 78.4
H1' C1' N9 C8 138.6 179.4
H1' C1' N9 C4 321.3 359.2
C2' C3' O3' HO3' 180.0 65.3
O3' C3' C2' C4' 119.4 118.7
O3' C3' C2' H3' 235.1 237.3
C3' C2' C1' O4' 332.9 23.9
C3' C2' C1' N9 93.5 142.7
C3' C2' C1' H1' 213.4 264.9
C1' C2' C3' O2' 115.7 119.0
C1' C2' C3' H2' 239.9 241.4
O2' C2' C3' H2' 124.2 122.5
C3' C2' O2' HO2' 317.1 298.6
C4' C3' C2' H3' 115.7 118.6
C2' C3' C4' C5' 201.9 217.0
C2' C3' C4' O4' 324.9 335.9
C2' C3' C4' H4' 80.7 94.8
O2' C2' C1' O4' 90.5 142.7
O2' C2' C1' N9 211.1 261.5
O2' C2' C1' H1' 330.9 23.7
C1' C2' O2' C3' 248.2 245.2
C1' C2' O2' H2' 123.5 122.7
C3' C2' O2' H2' 235.3 237.5
O2' C2' C3' C4' 280.7 241.1
O2' C2' C3' H3' 165.0 122.5
H2' C2' C1' O4' 213.1 265.3
H2' C2' C1' N9 333.7 24.1
H2' C2' C1' H1' 93.6 146.3
C1' C2' H2' C3' 114.2 114.6
C1' C2' H2' O2' 238.6 237.1
C3' C2' H2' O2' 124.4 122.6
H2' C2' C3' C4' 156.5 118.7
H2' C2' C3' H3' 40.8 0.0
H2' C2' O2' HO2' 81.8 61.2
O5' C5' C4' C3' 56.1 176.9
C4' C3' O3' HO3' 291.6 180.0
O3' C3' C4' C2' 241.2 241.3
O3' C3' C4' H3' 125.4 122.6
C1' O4' C4' C3' 19.3 40.5
C4' C3' C2' O2' 280.7 241.1
C4' C3' C2' H2' 156.5 118.7
C2' C3' C4' H3' 244.2 241.3
C5' C4' C3' O4' 236.9 241.1
C5' C4' C3' H4' 121.1 122.2
C3' C4' C5' H5' 176.8 296.9
C3' C4' C5' H5'' 295.2 57.0
O4' C4' C3' H4' 244.2 241.2
H3' C3' O3' HO3' 56.0 302.6
O3' C3' H3' C2' 124.9 122.8
O3' C3' H3' C4' 234.1 237.4
H3' C3' C2' O2' 165.0 122.5
H3' C3' C2' H2' 40.8 0.0
C2' C3' H3' C4' 109.2 114.6
H3' C3' C4' C5' 317.7 335.8
H3' C3' C4' O4' 80.7 94.7
H3' C3' C4' H4' 196.5 213.5
O5' C5' C4' H5' 239.3 240.0
O5' C5' C4' H5'' 120.9 120.0
C1' O4' C4' C5' 144.8 159.5
C5' C4' C3' H3' 317.7 335.8
C3' C4' C5' O4' 120.9 115.5
C3' C4' C5' H4' 239.1 237.8
O4' C4' C5' H4' 118.2 122.3
H5' C5' C4' H5'' 241.6 240.0
C4' O4' C1' N9 244.0 200.6
C4' O4' C1' H1' 123.8 78.4
O4' C4' C3' H3' 80.7 94.7
C3' C4' O4' C5' 234.5 241.0
C3' C4' O4' H4' 115.9 118.8
C5' C4' O4' H4' 241.4 237.8
O4' C4' C5' H5' 55.9 181.5
O4' C4' C5' H5'' 174.2 301.5
H4' C4' C3' H3' 196.5 213.5
C3' C4' H4' C5' 124.8 122.3
C3' C4' H4' O4' 244.9 244.6
C5' C4' H4' O4' 120.0 122.3
H4' C4' C5' H5' 297.7 59.2
H4' C4' C5' H5'' 56.0 179.2
O5' C5' H5' C4' 122.0 120.0
O5' C5' H5' H5'' 240.8 240.0
H5' C5' C4' O4' 55.9 181.5
H5' C5' C4' H4' 297.7 59.2
C4' C5' H5' H5'' 118.9 120.0
O5' C5' H5'' C4' 237.5 240.0
O5' C5' H5'' H5' 119.5 120.0
H5'' C5' C4' O4' 174.2 301.5
H5'' C5' C4' H4' 56.0 179.2
C4' C5' H5'' H5' 242.0 240.0
HO2' O2' C2' H2' 81.8 61.2
H61 N6 C6 H62 178.3 180.2
C5 C6 N6 N1 179.5 180.2
N6 C6 C5 N7 0.3 0.1
N6 C6 C5 C4 180.2 180.0
N6 C6 N1 C2 178.2 179.7
N6 C6 N1 H1 359.7 0.3
C6 N6 H61 H62 181.7 179.8
H61 N6 C6 C5 1.4 179.9
H61 N6 C6 N1 181.9 359.7
C6 N6 H62 H61 178.2 180.2
H62 N6 C6 C5 183.2 359.7
H62 N6 C6 N1 3.7 179.5
C6 N1 C2 O2 182.7 180.3
C4 N3 C2 O2 177.9 180.0
N3 C2 O2 N1 180.4 179.7
O2 C2 N1 H1 1.2 359.7
C5 C6 N6 H61 1.4 179.9
C5 C6 N6 H62 183.2 359.7
N6 C6 C5 N1 180.5 179.8
C5 C6 N1 C2 358.6 359.5
C5 C6 N1 H1 180.2 180.0
N7 C5 C6 C4 180.1 180.1
C6 C5 N7 C8 179.9 180.0
C6 C5 C4 N9 181.3 180.1
C6 C5 C4 N3 0.9 0.0
N1 C6 N6 H61 181.9 359.7
N1 C6 N6 H62 3.7 179.5
N6 C6 N1 C5 179.5 180.2
O2 C2 N1 C6 182.7 180.3
N1 C6 C5 N7 179.8 180.3
N1 C6 C5 C4 359.7 0.2
N3 C2 N1 C6 2.4 0.5
C2 N1 C6 H1 178.4 179.5
N7 C5 C6 N1 179.8 180.3
C6 C5 N7 C4 179.9 179.9
N7 C5 C4 N9 1.3 360.0
N7 C5 C4 N3 180.9 179.9
C5 N7 C8 N9 358.8 359.9
C5 N7 C8 H8 180.8 180.0
C1' N9 C4 C5 176.0 180.0
C4 C5 C6 N1 359.7 0.2
C6 C5 C4 N7 180.0 180.1
C4 C5 N7 C8 359.9 0.1
C8 N9 C4 C5 358.1 359.9
N9 C4 C5 N3 180.4 180.0
C5 C4 N3 C2 0.1 0.0
C1' N9 C8 N7 184.3 180.0
C8 N7 C5 C4 359.9 0.1
N9 C8 N7 H8 178.0 179.9
N7 C8 N9 C4 2.1 0.1
C8 N9 C1' H1' 138.6 179.4
C1' N9 C8 C4 182.3 179.9
C5 C4 N9 C8 358.1 359.9
N7 C8 N9 H8 182.0 180.1
C8 N9 C4 N3 178.5 180.0
N7 C8 H8 N9 177.8 179.9
H8 C8 N9 C4 180.0 180.0
C4 N9 C1' H1' 321.3 359.2
C1' N9 C4 C8 177.9 180.1
C5 C4 N9 N3 179.6 179.9
C4 N9 C8 H8 180.0 180.0
N9 C4 N3 C2 179.6 180.0
O2 C2 N3 C4 177.9 180.0
C5 C4 N3 N9 180.5 180.1
C4 N3 C2 N1 358.3 359.7
O2 C2 N3 N1 179.6 180.3
C6 N1 C2 N3 2.4 0.5
N3 C2 N1 H1 180.8 180.0
O2 C2 N1 N3 180.4 179.7
C6 N1 C2 H1 181.5 180.5
C6 N1 H1 C2 178.5 179.5