PDB Chemical Component IFM

Ideal Model

Chemical Description

Name 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE
Synonyms Afegostat; isofagomine; (3R,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-3,4-DIOL
Formula C6 H13 N O3
Formal charge 0
Molecular weight 147.172 g/mol
Component type NON-POLYMER

Chemical features

Atom count 23
Chiral atom count 3
Chiral atoms C4 C3 C5
Bond count 23
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (3R,4R,5R)-5-(hydroxymethyl)piperidine-3,4-diol
Systematic name (OpenEye OEToolkits) (3R,4R,5R)-5-(hydroxymethyl)piperidine-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1CNC[C@@H](O)[C@@H]1O
SMILES (CACTVS) OC[CH]1CNC[CH](O)[CH]1O
Stereo SMILES (OpenEye) C1[C@@H]([C@H]([C@@H](CN1)O)O)CO
InChI descriptor InChI=1S/C6H13NO3/c8-3-4-1-7-2-5(9)6(4)10/h4-10H,1-3H2/t4-,5-,6-/m1/s1
InChIKey descriptor QPYJXFZUIJOGNX-HSUXUTPPSA-N

Status Information

Last modified 2020-05-27
Created 2003-02-09
Release status REL
Model PDB code 1OCN
Processing site RCSB