PDB Chemical Component IDX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IDX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O5	1.431	1.429
C1	O1	1.430	1.429
C1	H1	1.100	1.090
C2	C1	1.521	1.531
C2	O2	1.436	1.429
C2	H2	1.100	1.090
C3	C2	1.528	1.532
C3	C4	1.526	1.531
C3	H3	1.100	1.091
C4	C5	1.523	1.531
C4	O4	1.430	1.429
C4	H4	1.101	1.090
C5	C6	1.524	1.507
C5	O5	1.434	1.430
C5	H5	1.100	1.090
C6	O6B	1.252	1.343
O2	S	1.782	1.522
O3	C3	1.412	1.429
O3	HO3	0.950	0.967
O6B	HO6B	0.949	0.967
O6A	C6	1.252	1.208
S	O1S	1.485	1.421
S	O2S	1.482	1.523
O2S	HO2S	0.950	0.966
O3S	S	1.483	1.421
O1	HO1	0.950	0.968
O4	HO4	0.950	0.966

Bond Angles for IDX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O5	C1	O1	109.6	109.5
O5	C1	H1	109.7	109.4
C2	C1	O5	109.0	109.4
C1	O5	C5	114.9	114.1
O1	C1	H1	109.2	109.5
C2	C1	O1	109.6	109.5
C1	O1	HO1	109.5	114.0
C2	C1	H1	109.7	109.5
O2	C2	H2	108.8	109.5
C3	C2	O2	109.9	109.5
C2	O2	S	121.6	114.0
C3	C2	H2	109.8	109.5
C4	C3	H3	109.0	109.6
C3	C4	C5	109.0	109.2
C3	C4	O4	109.6	109.5
C3	C4	H4	109.8	109.5
O3	C3	H3	108.0	109.6
C5	C4	O4	109.6	109.5
C5	C4	H4	109.7	109.5
C4	C5	C6	108.4	109.5
C4	C5	O5	109.1	109.4
C4	C5	H5	109.5	109.5
O4	C4	H4	109.1	109.5
C4	O4	HO4	109.5	114.0
C6	C5	O5	106.6	109.5
C6	C5	H5	111.9	109.5
C5	C6	O6B	118.6	120.0
O5	C5	H5	111.2	109.5
C6	O6B	HO6B	109.5	117.0
O2	S	O1S	109.8	106.4
O2	S	O2S	109.9	107.2
O1S	S	O2S	109.2	106.4
S	O2S	HO2S	109.5	114.0

Torsion Angles for IDX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	O5	H1	119.9	120.0
C2	C1	O5	O1	119.9	120.0
O5	C1	O1	HO1	195.2	300.0
C2	C1	O5	H1	239.8	240.0
C4	C5	O5	C1	313.3	298.8
C6	C5	O5	C1	196.4	178.9
C1	O5	C5	H5	74.2	58.8
O5	C1	O1	H1	239.8	240.0
C2	C1	O1	O5	240.4	240.0
O1	C1	O5	C5	222.6	301.2
C2	C1	O1	H1	120.2	120.0
O5	C1	H1	O1	120.1	120.0
C2	C1	H1	O5	119.8	119.9
H1	C1	O5	C5	102.7	181.2
C2	C1	H1	O1	239.9	239.9
H1	C1	O1	HO1	315.4	60.0
O5	C1	C2	O1	240.1	240.0
O5	C1	C2	H1	120.2	119.9
C2	C1	O5	C5	342.5	61.2
O1	C1	C2	H1	240.1	239.9
C2	C1	O1	HO1	75.6	180.0
O2	C2	C1	O5	306.0	182.4
O2	C2	C1	O1	66.0	302.4
O2	C2	C1	H1	185.8	62.5
C3	C2	O2	H2	120.2	120.2
C2	O2	S	O1S	134.8	321.5
C2	O2	S	O2S	14.7	75.0
H2	C2	C1	O5	186.4	62.3
H2	C2	C1	O1	306.3	182.3
H2	C2	C1	H1	66.2	302.4
C3	C2	H2	O2	239.7	239.8
H2	C2	O2	S	62.9	25.1
C3	C2	C1	O5	66.1	302.4
C3	C2	C1	O1	186.1	62.4
C3	C2	C1	H1	305.9	182.4
O2	C2	C3	H2	240.4	239.8
C3	C2	O2	S	183.1	145.3
C4	C3	C2	O2	74.7	176.9
C4	C3	C2	H2	194.3	297.1
O3	C3	C4	H3	241.5	239.8
C5	C4	C3	O4	240.0	240.0
C5	C4	C3	H4	120.2	119.9
C3	C4	C5	C6	181.0	177.6
C3	C4	C5	O5	65.3	57.6
C3	C4	C5	H5	303.4	297.6
O4	C4	C3	H4	240.2	239.9
C3	C4	O4	HO4	261.2	180.0
H3	C3	C2	O2	193.9	296.8
H3	C3	C2	H2	313.5	57.0
H3	C3	C4	C5	224.2	183.1
H3	C3	C4	O4	344.2	303.1
H3	C3	C4	H4	104.0	63.2
C1	O5	C5	C4	313.3	298.8
C5	C4	C3	H3	224.2	183.1
C3	C4	C5	O4	119.9	120.0
C3	C4	C5	H4	239.8	240.1
O4	C4	C5	H4	119.8	120.1
C5	C4	O4	HO4	20.8	299.8
C6	C5	C4	O5	115.7	120.0
C6	C5	C4	H5	237.7	239.9
C4	C5	C6	O6B	239.1	65.0
O5	C5	C4	H5	122.0	120.0
O4	C4	C3	H3	344.2	303.1
C3	C4	O4	C5	240.4	240.3
C3	C4	O4	H4	120.2	120.1
C5	C4	O4	H4	239.8	239.9
O4	C4	C5	C6	61.1	57.6
O4	C4	C5	O5	305.4	297.7
O4	C4	C5	H5	183.4	177.7
H4	C4	C3	H3	104.0	63.2
C3	C4	H4	C5	119.8	119.7
C3	C4	H4	O4	239.9	239.9
C5	C4	H4	O4	120.1	120.1
H4	C4	C5	C6	301.3	297.5
H4	C4	C5	O5	185.6	177.5
H4	C4	C5	H5	63.6	57.6
H4	C4	O4	HO4	141.0	59.9
C1	O5	C5	C6	196.4	178.9
C6	C5	C4	O4	61.1	57.6
C6	C5	C4	H4	301.3	297.5
C4	C5	C6	O5	242.7	240.1
C4	C5	C6	H5	120.9	120.0
O5	C5	C6	H5	238.2	239.9
C5	C6	O6B	HO6B	179.2	180.0
C5	O5	C1	O1	222.6	301.2
C5	O5	C1	H1	102.7	181.2
O5	C5	C4	O4	305.4	297.7
O5	C5	C4	H4	185.6	177.5
C4	C5	O5	C6	116.9	120.0
C4	C5	O5	H5	239.1	240.0
C6	C5	O5	H5	122.2	120.1
O5	C5	C6	O6B	356.4	184.9
H5	C5	C4	O4	183.4	177.7
H5	C5	C4	H4	63.6	57.6
C4	C5	H5	C6	239.7	240.0
C4	C5	H5	O5	120.6	119.9
C6	C5	H5	O5	240.9	239.9
H5	C5	C6	O6B	118.2	305.0
O6B	C6	C5	O5	356.4	184.9
O6B	C6	C5	H5	118.2	305.0
S	O2	C2	H2	62.9	25.1
O1S	S	O2	O2S	120.1	246.5
O2	S	O2S	HO2S	311.2	180.0
O3	C3	C2	H2	72.1	177.2
C4	C3	O3	H3	119.2	120.2
O3	C3	C4	O4	225.6	182.8
O3	C3	C4	H4	345.5	303.0
HO3	O3	C3	H3	311.3	300.3
O6A	C6	C5	H5	297.4	125.0
O6A	C6	O6B	HO6B	0.0	359.9
O2	S	O1S	O2S	239.5	114.1
O1S	S	O2S	HO2S	190.7	293.5
O2	S	O2S	O1S	120.5	246.5
O3S	S	O2S	HO2S	71.2	66.5
HO1	O1	C1	H1	315.4	60.0
HO4	O4	C4	H4	141.0	59.9