PDB Chemical Component IDN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IDN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C01	C02	1.466	1.392
C01	N06	1.390	1.327
C01	N19	1.390	1.391
C02	C03	1.447	1.368
C02	C25	1.537	1.506
C03	C04	1.441	1.405
C03	H03	1.103	1.081
C04	C05	1.459	1.398
C04	C07	1.481	1.470
C05	N06	1.408	1.316
C05	H05	1.103	1.079
C07	C08	1.392	1.348
C07	H07	1.103	1.080
C08	C09	1.520	1.462
C08	H08	1.103	1.080
C09	O10	1.238	1.217
C09	N11	1.432	1.348
N11	C12	1.467	1.465
N11	C13	1.489	1.465
C12	H121	1.116	1.090
C12	H122	1.115	1.089
C12	H123	1.115	1.090
C13	C14	1.509	1.507
C13	H131	1.115	1.090
C13	H132	1.115	1.090
C14	C15	1.408	1.341
C14	C18	1.447	1.464
C15	N16	1.374	1.368
C15	H15	1.103	1.080
N16	C17	1.423	1.377
N16	C20	1.487	1.465
C17	C18	1.473	1.406
C17	C23	1.444	1.391
C18	C24	1.436	1.395
N19	C27	1.396	1.345
N19	H19	1.019	0.970
C20	H201	1.115	1.090
C20	H202	1.115	1.090
C20	H203	1.114	1.089
C21	C22	1.447	1.388
C21	C24	1.452	1.366
C21	H21	1.103	1.080
C22	C23	1.454	1.378
C22	H22	1.102	1.080
C23	H23	1.103	1.080
C24	H24	1.102	1.080
C25	C26	1.573	1.529
C25	H251	1.115	1.090
C25	H252	1.115	1.090
C26	C27	1.573	1.505
C26	H261	1.115	1.089
C26	H262	1.116	1.090
C27	O28	1.226	1.212

Bond Angles for IDN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C02	C01	N06	122.2	120.6
C02	C01	N19	119.9	119.6
C01	C02	C03	117.7	119.7
C01	C02	C25	119.3	120.1
N06	C01	N19	117.9	119.7
C01	N06	C05	119.1	121.8
C01	N19	C27	126.3	120.7
C01	N19	H19	116.6	119.7
C03	C02	C25	123.0	120.2
C02	C03	C04	121.1	118.5
C02	C03	H03	119.6	120.8
C02	C25	C26	113.5	109.5
C02	C25	H251	110.8	109.5
C02	C25	H252	110.7	109.5
C04	C03	H03	119.3	120.8
C03	C04	C05	117.2	118.8
C03	C04	C07	118.9	120.6
C05	C04	C07	123.9	120.6
C04	C05	N06	122.8	120.6
C04	C05	H05	120.5	119.7
C04	C07	C08	126.7	120.0
C04	C07	H07	120.1	120.0
N06	C05	H05	116.8	119.7
C08	C07	H07	113.1	120.0
C07	C08	C09	119.4	120.0
C07	C08	H08	116.0	120.0
C09	C08	H08	124.6	120.0
C08	C09	O10	113.8	120.0
C08	C09	N11	122.2	120.0
O10	C09	N11	124.0	120.0
C09	N11	C12	117.0	120.0
C09	N11	C13	126.1	120.0
C12	N11	C13	116.8	120.0
N11	C12	H121	117.0	109.5
N11	C12	H122	109.5	109.5
N11	C12	H123	109.4	109.4
N11	C13	C14	110.3	109.5
N11	C13	H131	112.0	109.4
N11	C13	H132	112.0	109.5
H121	C12	H122	109.4	109.5
H121	C12	H123	109.5	109.4
H122	C12	H123	100.7	109.4
C14	C13	H131	111.9	109.5
C14	C13	H132	111.9	109.5
C13	C14	C15	125.5	126.5
C13	C14	C18	127.3	126.5
H131	C13	H132	98.5	109.5
C15	C14	C18	107.2	107.0
C14	C15	N16	110.8	109.9
C14	C15	H15	125.6	125.0
C14	C18	C17	106.2	106.0
C14	C18	C24	133.3	134.1
N16	C15	H15	123.6	125.0
C15	N16	C17	108.8	109.9
C15	N16	C20	126.6	125.1
C17	N16	C20	124.6	125.1
N16	C17	C18	106.9	107.2
N16	C17	C23	134.1	133.5
N16	C20	H201	126.6	109.5
N16	C20	H202	106.2	109.5
N16	C20	H203	106.2	109.5
C18	C17	C23	119.0	119.3
C17	C18	C24	120.5	119.9
C17	C23	C22	120.6	119.8
C17	C23	H23	119.4	120.1
C18	C24	C21	119.9	119.8
C18	C24	H24	119.5	120.1
C27	N19	H19	117.1	119.6
N19	C27	C26	116.8	120.9
N19	C27	O28	122.5	119.6
H201	C20	H202	106.2	109.5
H201	C20	H203	106.2	109.5
H202	C20	H203	103.3	109.5
C22	C21	C24	120.3	120.5
C22	C21	H21	119.7	119.7
C21	C22	C23	119.8	120.6
C21	C22	H22	119.9	119.7
C24	C21	H21	120.1	119.7
C21	C24	H24	120.6	120.1
C23	C22	H22	120.3	119.7
C22	C23	H23	120.0	120.1
C26	C25	H251	110.7	109.4
C26	C25	H252	110.7	109.5
C25	C26	C27	113.5	109.8
C25	C26	H261	110.8	109.5
C25	C26	H262	110.7	109.5
H251	C25	H252	99.6	109.5
C27	C26	H261	110.8	109.4
C27	C26	H262	110.8	109.4
C26	C27	O28	120.6	119.6
H261	C26	H262	99.5	109.3

Torsion Angles for IDN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N06	C01	C02	N19	180.5	180.0
C02	C01	N06	C05	359.7	0.1
C02	C01	N19	C27	11.9	18.6
C02	C01	N19	H19	191.9	198.5
C03	C02	C01	C25	180.3	179.7
C01	C02	C03	C04	0.2	0.5
C01	C02	C03	H03	180.1	180.3
C01	C02	C25	C26	335.8	326.1
C01	C02	C25	H251	101.1	206.2
C01	C02	C25	H252	210.6	86.2
C02	C01	N06	N19	179.5	180.0
N06	C01	C02	C03	0.3	359.7
N06	C01	C02	C25	180.0	180.0
N06	C01	N19	C27	191.4	198.6
N06	C01	N19	H19	11.4	18.5
C04	C05	N06	C01	359.9	359.9
C01	N06	C05	H05	179.9	180.0
C02	C01	N19	N06	180.5	180.0
N19	C01	C02	C03	179.7	179.7
N19	C01	C02	C25	359.4	360.0
N19	C01	N06	C05	180.2	180.1
C27	N19	C01	H19	180.0	180.1
C01	N19	C27	C26	3.9	0.7
C01	N19	C27	O28	181.0	180.7
C03	C02	C01	N06	0.3	359.7
C03	C02	C01	N19	179.7	179.7
C01	C02	C03	C25	179.7	180.3
C03	C02	C25	C26	155.5	146.4
C03	C02	C25	H251	280.8	26.5
C03	C02	C25	H252	30.3	266.4
C04	C03	C02	H03	180.1	180.2
C02	C03	C04	C05	359.5	359.5
C02	C03	C04	C07	180.7	179.8
C25	C02	C01	N06	180.0	180.0
C25	C02	C01	N19	359.4	360.0
C01	C02	C25	C03	180.3	179.7
C25	C02	C03	C04	180.5	180.2
C25	C02	C03	H03	0.4	0.0
C26	C25	C02	H251	234.7	119.9
C26	C25	C02	H252	125.2	240.0
C02	C25	C26	C27	37.6	48.3
C02	C25	C26	H261	162.9	288.2
C02	C25	C26	H262	272.3	168.4
H251	C25	C02	H252	250.5	120.0
C04	C03	C02	C25	180.5	180.2
C02	C03	C04	H03	179.9	179.8
C05	C04	C03	C07	178.7	179.7
C03	C04	C05	N06	0.5	0.3
C03	C04	C05	H05	180.5	180.2
C03	C04	C07	C08	309.2	179.7
C03	C04	C07	H07	129.1	359.7
H03	C03	C02	C25	0.4	0.0
C02	C03	H03	C04	180.1	180.2
H03	C03	C04	C05	179.5	179.7
H03	C03	C04	C07	0.8	360.0
C01	N06	C05	C04	359.9	359.9
C05	C04	C03	H03	179.5	179.7
C03	C04	C05	C07	181.4	180.3
C05	C04	C07	C08	130.5	0.1
C05	C04	C07	H07	310.5	180.1
N06	C05	C04	H05	180.0	180.1
C07	C04	C03	H03	0.8	360.0
C03	C04	C07	C05	178.6	179.7
C07	C04	C05	N06	179.2	180.0
C07	C04	C05	H05	359.2	359.9
C08	C07	C04	H07	180.0	180.0
C04	C07	C08	C09	177.4	180.0
C04	C07	C08	H08	357.5	359.9
C05	N06	C01	N19	180.2	180.1
N06	C05	C04	C07	179.2	180.0
C04	C05	N06	H05	180.0	179.9
H05	C05	C04	C07	359.2	359.9
C04	C05	H05	N06	180.0	180.1
C04	C07	C08	H07	180.0	180.0
C09	C08	C07	H08	180.0	180.1
C07	C08	C09	O10	64.8	5.1
C07	C08	C09	N11	245.3	185.2
C04	C07	H07	C08	180.0	180.0
H07	C07	C08	C09	357.5	0.0
H07	C07	C08	H08	177.5	179.9
C09	C08	C07	H07	357.5	0.0
C07	C08	C09	H08	180.0	179.9
O10	C09	C08	N11	179.4	179.9
C08	C09	N11	C12	178.9	185.4
C08	C09	N11	C13	359.5	5.4
H08	C08	C07	H07	177.5	179.9
C07	C08	H08	C09	180.0	180.1
H08	C08	C09	O10	244.7	185.2
H08	C08	C09	N11	65.3	5.3
O10	C09	C08	H08	244.7	185.2
C08	C09	O10	N11	180.6	180.1
O10	C09	N11	C12	359.5	5.5
O10	C09	N11	C13	180.2	185.4
N11	C09	C08	H08	65.3	5.3
C08	C09	N11	O10	179.4	179.9
C12	N11	C09	C13	179.3	180.0
C09	N11	C12	H121	180.0	354.9
C09	N11	C12	H122	305.2	115.0
C09	N11	C12	H123	54.8	234.9
C09	N11	C13	C14	100.9	270.0
C09	N11	C13	H131	226.2	30.0
C09	N11	C13	H132	335.7	150.0
C09	N11	C12	C13	180.6	180.0
C12	N11	C13	C14	281.6	90.0
C12	N11	C13	H131	46.9	210.0
C12	N11	C13	H132	156.4	330.0
H121	C12	N11	H122	234.8	239.9
H121	C12	N11	H123	125.3	120.0
H122	C12	N11	H123	250.5	240.1
C09	N11	C13	C12	179.3	180.0
C13	N11	C12	H121	359.4	175.0
C13	N11	C12	H122	124.6	295.1
C13	N11	C12	H123	234.2	55.0
C14	C13	N11	H131	234.7	240.0
C14	C13	N11	H132	125.2	120.0
N11	C13	C14	C15	268.3	360.0
N11	C13	C14	C18	87.9	179.7
H131	C13	N11	H132	250.5	240.0
H121	C12	N11	C13	359.4	175.0
N11	C12	H121	H122	125.2	120.1
N11	C12	H121	H123	234.8	240.0
H122	C12	H121	H123	109.5	119.9
H122	C12	N11	C13	124.6	295.1
N11	C12	H122	H121	230.5	239.9
N11	C12	H122	H123	115.2	119.9
H121	C12	H122	H123	244.7	240.0
H123	C12	N11	C13	234.2	55.0
N11	C12	H123	H121	129.5	120.0
N11	C12	H123	H122	244.7	240.0
H121	C12	H123	H122	115.2	120.0
N11	C13	C14	H131	125.3	119.9
N11	C13	C14	H132	234.7	240.0
H131	C13	C14	H132	109.4	120.1
C15	C14	C13	C18	180.4	180.2
C13	C14	C15	N16	179.4	180.0
C13	C14	C15	H15	359.4	0.0
C13	C14	C18	C17	180.5	179.8
C13	C14	C18	C24	0.3	0.7
N11	C13	H131	C14	235.6	240.0
N11	C13	H131	H132	117.9	120.0
C14	C13	H131	H132	242.3	239.9
H131	C13	C14	C15	143.0	240.0
H131	C13	C14	C18	322.6	59.8
N11	C13	H132	C14	124.3	120.0
N11	C13	H132	H131	242.1	240.0
C14	C13	H132	H131	117.8	120.1
H132	C13	C14	C15	33.6	119.9
H132	C13	C14	C18	213.2	299.7
C15	C14	C13	H131	143.0	240.0
C15	C14	C13	H132	33.6	119.9
C13	C14	C15	C18	179.6	179.8
C15	C14	C18	C17	0.1	359.6
C15	C14	C18	C24	179.9	180.5
N16	C15	C14	H15	180.1	180.0
C14	C15	N16	C17	0.2	0.1
C14	C15	N16	C20	180.3	180.0
C18	C14	C13	H131	322.6	59.8
C18	C14	C13	H132	213.2	299.7
C13	C14	C18	C15	180.4	180.2
C18	C14	C15	N16	359.8	0.2
C18	C14	C15	H15	179.7	180.2
N16	C17	C18	C14	0.0	0.4
C14	C18	C17	C23	179.9	180.1
C17	C18	C14	C24	180.2	179.1
C14	C18	C24	C21	180.1	179.6
C14	C18	C24	H24	0.2	359.3
N16	C15	C14	C18	359.8	0.2
C14	C15	N16	H15	179.9	180.0
C17	N16	C15	C20	179.9	180.0
C15	N16	C17	C18	359.9	359.7
C15	N16	C17	C23	180.0	180.0
C15	N16	C20	H201	180.0	90.0
C15	N16	C20	H202	305.2	210.0
C15	N16	C20	H203	54.7	330.0
H15	C15	C14	C18	179.7	180.2
C14	C15	H15	N16	180.1	180.0
H15	C15	N16	C17	180.3	180.0
H15	C15	N16	C20	0.4	0.0
C14	C18	C17	N16	0.0	0.4
C17	N16	C15	H15	180.3	180.0
C15	N16	C17	C20	180.1	180.0
C17	N16	C20	H201	0.2	270.0
C17	N16	C20	H202	125.4	29.9
C17	N16	C20	H203	234.9	149.9
C18	C17	N16	C23	179.8	179.7
N16	C17	C18	C24	180.2	179.7
N16	C17	C23	C22	179.9	179.9
N16	C17	C23	H23	359.9	359.9
C20	N16	C15	H15	0.4	0.0
C15	N16	C20	C17	179.8	180.0
C20	N16	C17	C18	179.7	179.7
C20	N16	C17	C23	359.9	0.1
H201	C20	N16	H202	234.8	240.0
H201	C20	N16	H203	125.3	120.0
H202	C20	N16	H203	250.5	240.0
C14	C18	C17	C24	179.8	180.7
C18	C17	N16	C20	179.7	179.7
N16	C17	C18	C23	180.1	180.3
C18	C17	C23	C22	0.1	0.3
C18	C17	C23	H23	180.1	180.3
C17	C18	C24	C21	359.9	0.6
C17	C18	C24	H24	179.9	180.3
C23	C17	N16	C20	359.9	0.1
N16	C17	C23	C18	179.8	179.6
C23	C17	C18	C24	0.1	359.4
C21	C22	C23	C17	359.9	0.0
C17	C23	C22	H22	179.8	180.0
C22	C23	C17	H23	180.0	180.0
C14	C18	C24	C17	180.3	179.0
C24	C18	C17	C23	0.1	359.4
C22	C21	C24	C18	0.1	359.7
C18	C24	C21	H21	180.1	179.6
C21	C24	C18	H24	179.9	180.3
C01	N19	C27	H19	180.0	179.9
C25	C26	C27	N19	331.1	324.9
N19	C27	C26	H261	205.8	85.1
N19	C27	C26	H262	96.4	204.8
C26	C27	N19	O28	182.9	180.0
C01	N19	H19	C27	180.0	180.1
H19	N19	C27	C26	183.9	180.8
H19	N19	C27	O28	1.0	0.8
N16	C20	H201	H202	125.2	120.0
N16	C20	H201	H203	234.7	240.0
H202	C20	H201	H203	109.5	120.0
N16	C20	H202	H201	223.1	240.0
N16	C20	H202	H203	111.5	120.0
H201	C20	H202	H203	248.4	240.0
N16	C20	H203	H201	137.0	120.0
N16	C20	H203	H202	248.5	240.0
H201	C20	H203	H202	111.5	120.0
C17	C23	C22	C21	359.9	0.0
C18	C24	C21	C22	0.1	359.7
C24	C21	C22	H21	180.0	179.9
C22	C21	C24	H24	180.0	180.0
C23	C22	C21	H22	180.0	179.9
C21	C22	C23	H23	179.9	180.0
C18	C24	C21	H24	180.1	179.7
C22	C21	C24	H21	180.0	180.1
C24	C21	C22	C23	0.1	360.0
C24	C21	C22	H22	180.1	180.0
C22	C21	H21	C24	180.0	179.9
H21	C21	C22	C23	180.0	180.0
H21	C21	C22	H22	0.1	0.1
H21	C21	C24	H24	0.0	359.9
C17	C23	C22	H23	180.0	180.0
C23	C22	C21	C24	0.1	360.0
C23	C22	C21	H21	180.0	180.0
C21	C22	C23	H22	180.0	180.1
H22	C22	C21	C24	180.1	180.0
H22	C22	C21	H21	0.1	0.1
C21	C22	H22	C23	180.0	179.9
H22	C22	C23	H23	359.8	360.0
C17	C23	H23	C22	180.0	180.0
H23	C23	C22	H22	359.8	360.0
C18	C24	H24	C21	179.9	180.3
H24	C24	C21	H21	0.0	359.9
C02	C25	C26	H251	125.3	240.1
C02	C25	C26	H252	234.7	120.1
N19	C27	C26	C25	331.1	324.9
H251	C25	C26	H252	109.4	240.0
C27	C26	C25	H261	234.7	120.1
C27	C26	C25	H262	125.3	239.9
C25	C26	C27	O28	154.0	144.9
H261	C26	C25	H262	250.6	119.8
C02	C25	H251	C26	233.2	119.9
C02	C25	H251	H252	116.6	239.9
C26	C25	H251	H252	243.5	120.0
H251	C25	C26	C27	272.3	168.3
H251	C25	C26	H261	37.6	48.2
H251	C25	C26	H262	147.0	288.3
C02	C25	H252	C26	126.8	240.0
C02	C25	H252	H251	243.3	120.0
C26	C25	H252	H251	116.6	240.0
H252	C25	C26	C27	162.9	288.3
H252	C25	C26	H261	288.2	168.2
H252	C25	C26	H262	37.6	48.4
C26	C27	N19	H19	183.9	180.8
N19	C27	C26	O28	177.1	180.0
C27	C26	C25	H251	272.3	168.3
C27	C26	C25	H252	162.9	288.3
C25	C26	C27	H261	125.3	239.8
C25	C26	C27	H262	234.7	120.1
H261	C26	C27	H262	109.4	240.3
H261	C26	C25	H251	37.6	48.2
H261	C26	C25	H252	288.2	168.2
C25	C26	H261	C27	233.2	120.4
C25	C26	H261	H262	116.6	240.1
C27	C26	H261	H262	243.4	119.7
H261	C26	C27	O28	28.7	265.1
H262	C26	C25	H251	147.0	288.3
H262	C26	C25	H252	37.6	48.4
C25	C26	H262	C27	126.8	239.7
C25	C26	H262	H261	243.4	119.9
C27	C26	H262	H261	116.6	240.3
H262	C26	C27	O28	279.3	24.8
O28	C27	N19	H19	1.0	0.8
N19	C27	O28	C26	183.0	180.0
O28	C27	C26	H261	28.7	265.1
O28	C27	C26	H262	279.3	24.8