PDB Chemical Component IDM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IDM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.539 |
1.466 |
| N1 |
C7A |
1.493 |
1.395 |
| N1 |
HN1 |
1.019 |
0.970 |
| C2 |
C3 |
1.539 |
1.537 |
| C2 |
H21 |
1.115 |
1.090 |
| C2 |
H22 |
1.116 |
1.090 |
| C3 |
C4A |
1.512 |
1.512 |
| C3 |
H31 |
1.115 |
1.090 |
| C3 |
H32 |
1.115 |
1.090 |
| C4A |
C4 |
1.395 |
1.381 |
| C4A |
C7A |
1.389 |
1.384 |
| C4 |
C5 |
1.398 |
1.382 |
| C4 |
H4 |
1.104 |
1.080 |
| C5 |
C6 |
1.400 |
1.382 |
| C5 |
H5 |
1.104 |
1.081 |
| C6 |
C7 |
1.398 |
1.378 |
| C6 |
H6 |
1.103 |
1.079 |
| C7 |
C7A |
1.386 |
1.396 |
| C7 |
H7 |
1.102 |
1.080 |
Bond Angles for IDM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C7A |
104.8 |
110.0 |
| C2 |
N1 |
HN1 |
113.9 |
125.0 |
| N1 |
C2 |
C3 |
104.4 |
105.2 |
| N1 |
C2 |
H21 |
114.1 |
110.3 |
| N1 |
C2 |
H22 |
114.1 |
110.3 |
| C7A |
N1 |
HN1 |
114.0 |
125.0 |
| N1 |
C7A |
C4A |
109.4 |
111.7 |
| N1 |
C7A |
C7 |
125.7 |
129.3 |
| C3 |
C2 |
H21 |
114.1 |
110.3 |
| C3 |
C2 |
H22 |
114.1 |
110.4 |
| C2 |
C3 |
C4A |
103.0 |
104.5 |
| C2 |
C3 |
H31 |
114.7 |
110.4 |
| C2 |
C3 |
H32 |
114.7 |
110.4 |
| H21 |
C2 |
H22 |
96.4 |
110.3 |
| C4A |
C3 |
H31 |
114.7 |
110.5 |
| C4A |
C3 |
H32 |
114.7 |
110.5 |
| C3 |
C4A |
C4 |
130.6 |
130.9 |
| C3 |
C4A |
C7A |
111.2 |
108.5 |
| H31 |
C3 |
H32 |
95.8 |
110.4 |
| C4 |
C4A |
C7A |
118.1 |
120.5 |
| C4A |
C4 |
C5 |
118.8 |
120.1 |
| C4A |
C4 |
H4 |
120.5 |
120.0 |
| C4A |
C7A |
C7 |
124.9 |
119.0 |
| C5 |
C4 |
H4 |
120.8 |
119.9 |
| C4 |
C5 |
C6 |
121.3 |
119.9 |
| C4 |
C5 |
H5 |
119.3 |
120.1 |
| C6 |
C5 |
H5 |
119.4 |
120.1 |
| C5 |
C6 |
C7 |
120.7 |
120.2 |
| C5 |
C6 |
H6 |
119.7 |
119.9 |
| C7 |
C6 |
H6 |
119.6 |
120.0 |
| C6 |
C7 |
C7A |
116.1 |
120.3 |
| C6 |
C7 |
H7 |
122.3 |
119.8 |
| C7A |
C7 |
H7 |
121.6 |
119.9 |
Torsion Angles for IDM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7A |
N1 |
C2 |
HN1 |
125.3 |
180.0 |
| C2 |
N1 |
C7A |
C4A |
343.8 |
-0.0 |
| C2 |
N1 |
C7A |
C7 |
164.9 |
180.0 |
| C3 |
C2 |
N1 |
H21 |
234.7 |
119.0 |
| C3 |
C2 |
N1 |
H22 |
125.2 |
241.0 |
| N1 |
C2 |
C3 |
C4A |
334.7 |
-0.0 |
| N1 |
C2 |
C3 |
H31 |
100.0 |
118.8 |
| N1 |
C2 |
C3 |
H32 |
209.5 |
241.2 |
| H21 |
C2 |
N1 |
H22 |
250.5 |
122.1 |
| C2 |
N1 |
C7A |
HN1 |
234.8 |
180.0 |
| C7A |
N1 |
C2 |
C3 |
25.7 |
-0.0 |
| C7A |
N1 |
C2 |
H21 |
151.0 |
241.0 |
| C7A |
N1 |
C2 |
H22 |
260.5 |
119.0 |
| C3 |
C4A |
C7A |
N1 |
359.8 |
-0.0 |
| C4 |
C4A |
C7A |
N1 |
180.9 |
180.0 |
| C4A |
C7A |
N1 |
C7 |
178.9 |
180.0 |
| C6 |
C7 |
C7A |
N1 |
179.1 |
180.0 |
| N1 |
C7A |
C7 |
H7 |
359.1 |
-0.0 |
| C2 |
N1 |
HN1 |
C7A |
120.2 |
180.0 |
| HN1 |
N1 |
C2 |
C3 |
260.4 |
180.0 |
| HN1 |
N1 |
C2 |
H21 |
25.7 |
61.0 |
| HN1 |
N1 |
C2 |
H22 |
135.2 |
299.0 |
| HN1 |
N1 |
C7A |
C4A |
109.0 |
180.0 |
| HN1 |
N1 |
C7A |
C7 |
290.2 |
-0.0 |
| C3 |
C2 |
N1 |
C7A |
25.7 |
-0.0 |
| C3 |
C2 |
N1 |
HN1 |
260.4 |
180.0 |
| N1 |
C2 |
C3 |
H21 |
125.3 |
241.1 |
| N1 |
C2 |
C3 |
H22 |
234.7 |
118.9 |
| H21 |
C2 |
C3 |
H22 |
109.4 |
237.8 |
| C4A |
C3 |
C2 |
H31 |
234.7 |
241.2 |
| C4A |
C3 |
C2 |
H32 |
125.3 |
118.8 |
| C2 |
C3 |
C4A |
C4 |
195.1 |
180.0 |
| C2 |
C3 |
C4A |
C7A |
16.5 |
-0.0 |
| H31 |
C3 |
C2 |
H32 |
250.5 |
237.6 |
| H21 |
C2 |
N1 |
C7A |
151.0 |
241.0 |
| H21 |
C2 |
N1 |
HN1 |
25.7 |
61.0 |
| N1 |
C2 |
H21 |
C3 |
240.0 |
115.8 |
| N1 |
C2 |
H21 |
H22 |
120.1 |
237.9 |
| C3 |
C2 |
H21 |
H22 |
240.0 |
122.2 |
| H21 |
C2 |
C3 |
C4A |
209.5 |
118.9 |
| H21 |
C2 |
C3 |
H31 |
334.7 |
237.7 |
| H21 |
C2 |
C3 |
H32 |
84.2 |
0.1 |
| H22 |
C2 |
N1 |
C7A |
260.5 |
119.0 |
| H22 |
C2 |
N1 |
HN1 |
135.2 |
299.0 |
| N1 |
C2 |
H22 |
C3 |
119.9 |
244.2 |
| N1 |
C2 |
H22 |
H21 |
239.9 |
122.1 |
| C3 |
C2 |
H22 |
H21 |
120.0 |
237.8 |
| H22 |
C2 |
C3 |
C4A |
100.0 |
241.1 |
| H22 |
C2 |
C3 |
H31 |
225.3 |
359.9 |
| H22 |
C2 |
C3 |
H32 |
334.8 |
122.3 |
| N1 |
C7A |
C4A |
C3 |
359.8 |
-0.0 |
| C4A |
C3 |
C2 |
H21 |
209.5 |
118.9 |
| C4A |
C3 |
C2 |
H22 |
100.0 |
241.1 |
| C2 |
C3 |
C4A |
H31 |
125.3 |
118.8 |
| C2 |
C3 |
C4A |
H32 |
234.7 |
241.2 |
| H31 |
C3 |
C4A |
H32 |
109.4 |
122.5 |
| C4 |
C4A |
C3 |
C7A |
178.6 |
180.0 |
| C3 |
C4A |
C4 |
C5 |
181.3 |
180.0 |
| C3 |
C4A |
C4 |
H4 |
1.3 |
-0.0 |
| C3 |
C4A |
C7A |
C7 |
178.6 |
180.0 |
| H31 |
C3 |
C2 |
H21 |
334.7 |
237.7 |
| H31 |
C3 |
C2 |
H22 |
225.3 |
359.9 |
| C2 |
C3 |
H31 |
C4A |
241.1 |
244.9 |
| C2 |
C3 |
H31 |
H32 |
120.6 |
122.4 |
| C4A |
C3 |
H31 |
H32 |
239.5 |
237.5 |
| H31 |
C3 |
C4A |
C4 |
69.8 |
61.2 |
| H31 |
C3 |
C4A |
C7A |
251.1 |
241.2 |
| H32 |
C3 |
C2 |
H21 |
84.2 |
0.1 |
| H32 |
C3 |
C2 |
H22 |
334.8 |
122.3 |
| C2 |
C3 |
H32 |
C4A |
118.9 |
115.1 |
| C2 |
C3 |
H32 |
H31 |
239.4 |
237.6 |
| C4A |
C3 |
H32 |
H31 |
120.5 |
122.5 |
| H32 |
C3 |
C4A |
C4 |
320.3 |
298.8 |
| H32 |
C3 |
C4A |
C7A |
141.7 |
118.8 |
| N1 |
C7A |
C4A |
C4 |
180.9 |
180.0 |
| C4 |
C4A |
C3 |
H31 |
69.8 |
61.2 |
| C4 |
C4A |
C3 |
H32 |
320.3 |
298.8 |
| C3 |
C4A |
C4 |
C7A |
181.4 |
180.0 |
| C4 |
C4A |
C7A |
C7 |
359.8 |
-0.0 |
| C5 |
C4 |
C4A |
H4 |
180.0 |
180.0 |
| C4A |
C4 |
C5 |
C6 |
0.2 |
-0.0 |
| C4A |
C4 |
C5 |
H5 |
180.2 |
180.0 |
| C4A |
C7A |
N1 |
HN1 |
109.0 |
180.0 |
| N1 |
C7A |
C4A |
C7 |
181.1 |
180.0 |
| C7A |
C4A |
C3 |
H31 |
251.1 |
241.2 |
| C7A |
C4A |
C3 |
H32 |
141.7 |
118.8 |
| C3 |
C4A |
C7A |
C4 |
178.8 |
180.0 |
| C7A |
C4A |
C4 |
C5 |
359.9 |
-0.0 |
| C7A |
C4A |
C4 |
H4 |
179.9 |
180.0 |
| C6 |
C7 |
C7A |
C4A |
0.4 |
360.0 |
| C4A |
C7A |
C7 |
H7 |
180.4 |
180.0 |
| C5 |
C4 |
C4A |
C7A |
359.9 |
-0.0 |
| C4A |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
0.1 |
-0.0 |
| C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
| H4 |
C4 |
C4A |
C7A |
179.9 |
180.0 |
| C4A |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.2 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.2 |
-0.0 |
| C6 |
C5 |
C4 |
H4 |
180.2 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
C7A |
359.7 |
-0.0 |
| C5 |
C6 |
C7 |
H7 |
179.7 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
0.2 |
-0.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
C7 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.0 |
360.0 |
| N1 |
C7A |
C7 |
C6 |
179.1 |
180.0 |
| C4A |
C7A |
C7 |
C6 |
0.4 |
360.0 |
| C7 |
C6 |
C5 |
H5 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| C7A |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.0 |
360.0 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
C7A |
179.6 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
359.7 |
-0.0 |
| C7 |
C7A |
N1 |
HN1 |
290.2 |
360.0 |
| N1 |
C7A |
C7 |
C4A |
178.7 |
180.0 |
| C7A |
C7 |
C6 |
H6 |
179.6 |
180.0 |
| C6 |
C7 |
C7A |
H7 |
180.0 |
180.0 |
| H7 |
C7 |
C6 |
H6 |
359.7 |
360.0 |
| C6 |
C7 |
H7 |
C7A |
180.0 |
180.0 |