PDB Chemical Component ICR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ICR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O6' P 1.610 1.610
O6' H6' 0.950 0.967
P O7' 1.609 1.480
P O8' 1.482 1.610
P O5' 1.610 1.610
O8' H8' 0.950 0.966
O5' C5' 1.430 1.429
C5' C4' 1.529 1.529
C5' H5'1 1.099 1.091
C5' H5'2 1.100 1.090
C4' O4' 1.438 1.447
C4' C3' 1.532 1.545
C4' H4' 1.100 1.090
O4' C1' 1.434 1.445
C3' O3' 1.431 1.428
C3' C2' 1.529 1.545
C3' H3' 1.100 1.090
O3' H1 0.951 0.966
C2' O2' 1.430 1.429
C2' C1' 1.528 1.544
C2' H2' 1.100 1.090
O2' H3 0.950 0.967
C1' N1 1.483 1.465
C1' H1' 1.100 1.089
N1 C2 1.333 1.366
N1 C5 1.329 1.379
C2 N3 1.332 1.286
C2 H2 1.080 1.080
N3 C4 1.469 1.470
C4 C7 1.532 1.507
C4 C5 1.527 1.517
C4 H4 1.100 1.090
C7 O9 1.251 1.343
C7 O8 1.249 1.208
O9 HO9 0.950 0.967
C5 N6 1.330 1.292
N6 HN6 1.000 0.970

Bond Angles for ICR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P O6' H6' 109.5 106.9
O6' P O7' 105.8 109.5
O6' P O8' 112.9 109.5
O6' P O5' 106.1 109.5
O7' P O8' 112.9 109.5
O7' P O5' 105.4 109.5
O8' P O5' 113.1 109.4
P O8' H8' 109.5 106.9
P O5' C5' 120.5 106.8
O5' C5' C4' 109.9 109.5
O5' C5' H5'1 109.3 109.4
O5' C5' H5'2 109.3 109.5
C4' C5' H5'1 109.3 109.4
C4' C5' H5'2 109.3 109.5
C5' C4' O4' 109.2 110.3
C5' C4' C3' 110.7 110.7
C5' C4' H4' 107.8 110.4
H5'1 C5' H5'2 109.8 109.5
O4' C4' C3' 105.9 104.7
O4' C4' H4' 112.4 110.4
C4' O4' C1' 104.0 105.4
C3' C4' H4' 110.9 110.3
C4' C3' O3' 109.7 110.5
C4' C3' C2' 103.2 104.2
C4' C3' H3' 113.4 110.5
O4' C1' C2' 100.4 104.8
O4' C1' N1 111.9 110.4
O4' C1' H1' 114.1 110.3
O3' C3' C2' 109.6 110.5
O3' C3' H3' 107.4 110.4
C3' O3' H1 109.5 106.8
C2' C3' H3' 113.5 110.5
C3' C2' O2' 109.6 110.5
C3' C2' C1' 100.5 104.1
C3' C2' H2' 114.7 110.5
O2' C2' C1' 108.5 110.6
O2' C2' H2' 107.6 110.4
C2' O2' H3 109.5 106.8
C1' C2' H2' 115.7 110.5
C2' C1' N1 110.5 110.4
C2' C1' H1' 115.4 110.4
N1 C1' H1' 104.6 110.4
C1' N1 C2 126.4 125.0
C1' N1 C5 125.3 124.9
C2 N1 C5 108.3 110.1
N1 C2 N3 110.8 113.4
N1 C2 H2 124.6 123.3
N1 C5 C4 109.3 104.5
N1 C5 N6 124.9 127.7
N3 C2 H2 124.6 123.3
C2 N3 C4 107.4 108.2
N3 C4 C7 110.3 110.6
N3 C4 C5 97.7 103.9
N3 C4 H4 116.6 110.5
C7 C4 C5 110.4 110.5
C7 C4 H4 105.3 110.5
C4 C7 O9 117.4 120.0
C4 C7 O8 117.2 120.0
C5 C4 H4 116.6 110.7
C4 C5 N6 125.8 127.8
O9 C7 O8 125.4 120.0
C7 O9 HO9 109.5 120.0
C5 N6 HN6 106.7 120.0

Torsion Angles for ICR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O7' P O6' O8' 236.0 240.0
O7' P O6' O5' 111.7 120.0
O8' P O6' O5' 235.6 240.1
O6' P O8' H8' 293.2 60.0
O6' P O5' C5' 297.1 175.0
H6' O6' P O7' 83.6 300.0
H6' O6' P O8' 207.6 60.1
H6' O6' P O5' 331.9 180.0
O7' P O6' H6' 83.6 300.0
O6' P O7' O8' 124.0 120.0
O6' P O7' O5' 247.9 240.0
O8' P O7' O5' 123.9 120.0
O7' P O8' H8' 53.1 180.0
O7' P O5' C5' 185.2 55.0
O8' P O6' H6' 207.6 60.1
O6' P O8' O7' 240.1 240.0
O6' P O8' O5' 120.5 120.0
O7' P O8' O5' 240.4 240.0
O8' P O5' C5' 61.3 295.0
O5' P O6' H6' 331.9 180.0
O6' P O5' O7' 111.9 120.0
O6' P O5' O8' 235.7 240.0
O7' P O5' O8' 123.8 120.0
O5' P O8' H8' 172.7 300.0
P O5' C5' C4' 178.0 180.0
P O5' C5' H5'1 58.2 60.0
P O5' C5' H5'2 298.0 300.1
H8' O8' P O5' 172.7 300.0
C4' C5' O5' H5'1 119.9 120.0
C4' C5' O5' H5'2 240.0 239.9
O5' C5' C4' O4' 307.4 66.5
O5' C5' C4' C3' 63.6 181.9
O5' C5' C4' H4' 185.1 304.2
H5'1 C5' O5' H5'2 120.2 120.0
O5' C5' C4' H5'1 240.2 240.1
O5' C5' C4' H5'2 120.0 120.1
H5'1 C5' C4' H5'2 239.8 240.0
O4' C4' C5' C3' 243.8 244.6
O4' C4' C5' H4' 122.3 122.3
C5' C4' O4' C1' 151.9 159.5
C3' C4' C5' H4' 238.6 237.6
C5' C4' C3' O3' 123.0 98.6
C5' C4' C3' C2' 239.7 217.3
C5' C4' C3' H3' 2.9 336.0
O5' C5' H5'1 C4' 120.2 120.0
O5' C5' H5'1 H5'2 240.1 240.0
C4' C5' H5'1 H5'2 119.9 120.0
H5'1 C5' C4' O4' 67.2 186.4
H5'1 C5' C4' C3' 183.5 301.8
H5'1 C5' C4' H4' 304.9 64.2
O5' C5' H5'2 C4' 239.7 239.9
O5' C5' H5'2 H5'1 119.8 119.9
C4' C5' H5'2 H5'1 240.1 240.0
H5'2 C5' C4' O4' 187.4 306.4
H5'2 C5' C4' C3' 303.7 61.8
H5'2 C5' C4' H4' 65.1 184.2
O4' C4' C5' H5'1 67.2 186.4
O4' C4' C5' H5'2 187.4 306.4
C5' C4' O4' C3' 119.2 119.1
C5' C4' O4' H4' 240.5 237.8
C3' C4' O4' H4' 121.3 118.7
O4' C4' C3' O3' 241.2 217.5
O4' C4' C3' C2' 357.9 336.2
O4' C4' C3' H3' 121.1 94.9
C4' O4' C1' C2' 310.1 319.5
C4' O4' C1' N1 192.8 200.7
C4' O4' C1' H1' 74.2 78.4
C3' C4' C5' H5'1 183.5 301.8
C3' C4' C5' H5'2 303.7 61.8
C5' C4' C3' O4' 241.8 241.1
C5' C4' C3' H4' 119.5 122.4
O4' C4' C3' H4' 237.8 241.3
C3' C4' O4' C1' 32.6 40.4
O3' C3' C4' C2' 243.3 241.3
O3' C3' C4' H3' 120.1 122.6
C4' C3' O3' H1 242.1 178.1
C2' C3' C4' H3' 236.8 241.3
C4' C3' C2' O2' 219.2 241.2
C4' C3' C2' C1' 333.2 359.9
C4' C3' C2' H2' 98.1 118.6
H4' C4' C5' H5'1 304.9 64.2
H4' C4' C5' H5'2 65.1 184.2
C5' C4' H4' O4' 120.3 122.2
C5' C4' H4' C3' 238.7 237.4
O4' C4' H4' C3' 118.4 115.2
H4' C4' O4' C1' 271.4 281.7
H4' C4' C3' O3' 3.4 336.2
H4' C4' C3' C2' 120.1 94.9
H4' C4' C3' H3' 243.3 213.6
C1' O4' C4' C3' 32.6 40.4
C1' O4' C4' H4' 271.4 281.7
C3' C2' C1' O4' 46.9 24.0
O2' C2' C1' O4' 161.8 142.7
O4' C1' C2' H2' 282.8 265.3
C2' C1' O4' N1 117.3 118.9
C2' C1' O4' H1' 235.9 241.2
N1 C1' O4' H1' 118.6 122.3
O4' C1' N1 C2 85.7 50.4
O4' C1' N1 C5 264.7 230.1
O3' C3' C4' H4' 3.4 336.2
C4' C3' O3' C2' 112.6 114.8
C4' C3' O3' H3' 236.3 237.4
C2' C3' O3' H3' 123.7 122.6
O3' C3' C2' O2' 336.0 359.9
O3' C3' C2' C1' 90.0 118.6
O3' C3' C2' H2' 214.8 237.3
C2' C3' C4' H4' 120.1 94.9
C4' C3' C2' O3' 243.3 241.3
C4' C3' C2' H3' 123.2 118.7
O4' C1' C2' C3' 46.9 24.0
O3' C3' C2' H3' 239.9 237.4
C2' C3' O3' H1 129.5 63.3
O2' C2' C3' C1' 246.0 241.2
O2' C2' C3' H2' 121.1 122.5
C3' C2' O2' H3 310.7 298.5
C1' C2' C3' H2' 235.1 241.3
C3' C2' C1' N1 165.3 142.9
C3' C2' C1' H1' 283.8 265.2
H3' C3' C4' H4' 243.3 213.6
C4' C3' H3' O3' 121.4 122.6
C4' C3' H3' C2' 242.7 245.2
O3' C3' H3' C2' 121.3 122.6
H3' C3' O3' H1 5.8 300.7
H3' C3' C2' O2' 96.1 122.4
H3' C3' C2' C1' 210.1 241.2
H3' C3' C2' H2' 334.9 359.9
H1 O3' C3' C2' 129.5 63.3
H1 O3' C3' H3' 5.8 300.7
O4' C1' C2' O2' 161.8 142.7
O2' C2' C3' H3' 96.1 122.4
C3' C2' O2' C1' 108.8 114.7
C3' C2' O2' H2' 234.7 237.4
C1' C2' O2' H2' 125.9 122.7
O2' C2' C1' N1 280.2 261.6
O2' C2' C1' H1' 38.6 23.9
O4' C1' C2' N1 241.7 241.1
O4' C1' C2' H1' 123.2 118.8
C1' C2' C3' H3' 210.1 241.2
C3' C2' C1' O2' 245.1 241.3
C3' C2' C1' H2' 124.2 118.7
O2' C2' C1' H2' 239.0 237.4
C1' C2' O2' H3 201.9 183.8
N1 C1' C2' H1' 241.5 237.7
C2' C1' N1 C2 334.6 295.1
C2' C1' N1 C5 153.6 114.7
H2' C2' C3' H3' 334.9 359.9
C3' C2' H2' O2' 122.2 122.6
C3' C2' H2' C1' 243.6 245.3
O2' C2' H2' C1' 121.4 122.7
H2' C2' O2' H3 76.1 61.1
H2' C2' C1' N1 41.1 24.2
H2' C2' C1' H1' 159.6 146.5
H3 O2' C2' C1' 201.9 183.8
H3 O2' C2' H2' 76.1 61.1
O4' C1' N1 C2' 111.1 115.4
O4' C1' N1 H1' 235.9 237.7
N1 C1' C2' H2' 41.1 24.2
C2' C1' N1 H1' 124.8 122.3
C2 N1 C1' C5 181.0 180.3
C1' N1 C2 N3 196.4 180.0
C1' N1 C2 H2 16.4 360.0
C1' N1 C5 C4 179.9 179.9
C1' N1 C5 N6 0.0 0.3
O4' C1' H1' C2' 244.4 244.7
O4' C1' H1' N1 122.7 122.3
H1' C1' C2' H2' 159.6 146.5
C2' C1' H1' N1 238.3 237.7
H1' C1' N1 C2 209.8 172.7
H1' C1' N1 C5 28.8 352.4
C2 N1 C1' H1' 209.8 172.7
C1' N1 C2 C5 179.1 179.7
C2 N1 C5 C4 359.1 359.6
C2 N1 C5 N6 179.2 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 333.4 360.0
C5 N1 C1' H1' 28.8 352.4
C1' N1 C5 C2 180.9 180.3
C5 N1 C2 N3 17.2 0.3
C5 N1 C2 H2 197.2 180.3
N3 C4 C5 N1 346.7 0.4
C7 C4 C5 N1 101.8 119.0
N1 C5 C4 H4 221.8 241.7
C4 C5 N1 N6 179.9 179.6
N1 C5 N6 HN6 360.0 179.5
N3 C2 N1 C5 17.2 0.3
N1 C2 N3 H2 180.0 180.0
C2 N3 C4 C7 267.8 241.2
C2 N3 C4 C5 22.9 359.8
C2 N3 C4 H4 147.9 118.6
H2 C2 N1 C5 197.2 180.3
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 153.4 180.0
N1 C5 C4 N3 346.7 0.4
C4 N3 C2 H2 153.4 180.0
C7 C4 N3 C5 244.9 241.5
C7 C4 N3 H4 120.0 122.7
N3 C4 C7 O9 160.8 198.6
N3 C4 C7 O8 340.3 18.6
C5 C4 N3 H4 235.1 241.2
N3 C4 C5 N6 166.6 180.0
N1 C5 C4 C7 101.8 119.0
N3 C4 C7 C5 106.9 114.5
N3 C4 C7 H4 233.4 237.3
C5 C4 C7 H4 126.6 122.8
C7 C4 C5 N6 281.7 298.6
O9 C7 C4 O8 180.5 180.0
C4 C7 O9 HO9 179.4 180.0
N1 C5 C4 N6 180.1 180.4
N3 C4 C5 C7 245.0 241.4
N3 C4 C5 H4 125.0 118.7
C7 C4 C5 H4 240.0 237.3
C5 C4 C7 O9 53.9 84.1
C5 C4 C7 O8 233.4 264.1
C4 C5 N6 HN6 180.1 360.0
N3 C4 H4 C7 122.6 122.7
N3 C4 H4 C5 245.3 245.4
C7 C4 H4 C5 122.7 122.7
H4 C4 C7 O9 287.4 321.3
H4 C4 C7 O8 106.8 141.3
H4 C4 C5 N6 41.7 61.3
O9 C7 C4 C5 53.9 84.1
O9 C7 C4 H4 287.4 321.3
C4 C7 O9 O8 179.4 180.0
O8 C7 C4 C5 233.4 264.1
O8 C7 C4 H4 106.8 141.3
C4 C7 O8 O9 180.6 180.0
O8 C7 O9 HO9 360.0 360.0
HO9 O9 C7 O8 360.0 360.0
N1 C5 N6 C4 179.9 179.5
N6 C5 C4 H4 41.7 61.3