PDB Chemical Component ICR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ICR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O6' |
P |
1.610 |
1.610 |
O6' |
H6' |
0.950 |
0.967 |
P |
O7' |
1.609 |
1.480 |
P |
O8' |
1.482 |
1.610 |
P |
O5' |
1.610 |
1.610 |
O8' |
H8' |
0.950 |
0.966 |
O5' |
C5' |
1.430 |
1.429 |
C5' |
C4' |
1.529 |
1.529 |
C5' |
H5'1 |
1.099 |
1.091 |
C5' |
H5'2 |
1.100 |
1.090 |
C4' |
O4' |
1.438 |
1.447 |
C4' |
C3' |
1.532 |
1.545 |
C4' |
H4' |
1.100 |
1.090 |
O4' |
C1' |
1.434 |
1.445 |
C3' |
O3' |
1.431 |
1.428 |
C3' |
C2' |
1.529 |
1.545 |
C3' |
H3' |
1.100 |
1.090 |
O3' |
H1 |
0.951 |
0.966 |
C2' |
O2' |
1.430 |
1.429 |
C2' |
C1' |
1.528 |
1.544 |
C2' |
H2' |
1.100 |
1.090 |
O2' |
H3 |
0.950 |
0.967 |
C1' |
N1 |
1.483 |
1.465 |
C1' |
H1' |
1.100 |
1.089 |
N1 |
C2 |
1.333 |
1.366 |
N1 |
C5 |
1.329 |
1.379 |
C2 |
N3 |
1.332 |
1.286 |
C2 |
H2 |
1.080 |
1.080 |
N3 |
C4 |
1.469 |
1.470 |
C4 |
C7 |
1.532 |
1.507 |
C4 |
C5 |
1.527 |
1.517 |
C4 |
H4 |
1.100 |
1.090 |
C7 |
O9 |
1.251 |
1.343 |
C7 |
O8 |
1.249 |
1.208 |
O9 |
HO9 |
0.950 |
0.967 |
C5 |
N6 |
1.330 |
1.292 |
N6 |
HN6 |
1.000 |
0.970 |
Bond Angles for ICR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
P |
O6' |
H6' |
109.5 |
106.9 |
O6' |
P |
O7' |
105.8 |
109.5 |
O6' |
P |
O8' |
112.9 |
109.5 |
O6' |
P |
O5' |
106.1 |
109.5 |
O7' |
P |
O8' |
112.9 |
109.5 |
O7' |
P |
O5' |
105.4 |
109.5 |
O8' |
P |
O5' |
113.1 |
109.4 |
P |
O8' |
H8' |
109.5 |
106.9 |
P |
O5' |
C5' |
120.5 |
106.8 |
O5' |
C5' |
C4' |
109.9 |
109.5 |
O5' |
C5' |
H5'1 |
109.3 |
109.4 |
O5' |
C5' |
H5'2 |
109.3 |
109.5 |
C4' |
C5' |
H5'1 |
109.3 |
109.4 |
C4' |
C5' |
H5'2 |
109.3 |
109.5 |
C5' |
C4' |
O4' |
109.2 |
110.3 |
C5' |
C4' |
C3' |
110.7 |
110.7 |
C5' |
C4' |
H4' |
107.8 |
110.4 |
H5'1 |
C5' |
H5'2 |
109.8 |
109.5 |
O4' |
C4' |
C3' |
105.9 |
104.7 |
O4' |
C4' |
H4' |
112.4 |
110.4 |
C4' |
O4' |
C1' |
104.0 |
105.4 |
C3' |
C4' |
H4' |
110.9 |
110.3 |
C4' |
C3' |
O3' |
109.7 |
110.5 |
C4' |
C3' |
C2' |
103.2 |
104.2 |
C4' |
C3' |
H3' |
113.4 |
110.5 |
O4' |
C1' |
C2' |
100.4 |
104.8 |
O4' |
C1' |
N1 |
111.9 |
110.4 |
O4' |
C1' |
H1' |
114.1 |
110.3 |
O3' |
C3' |
C2' |
109.6 |
110.5 |
O3' |
C3' |
H3' |
107.4 |
110.4 |
C3' |
O3' |
H1 |
109.5 |
106.8 |
C2' |
C3' |
H3' |
113.5 |
110.5 |
C3' |
C2' |
O2' |
109.6 |
110.5 |
C3' |
C2' |
C1' |
100.5 |
104.1 |
C3' |
C2' |
H2' |
114.7 |
110.5 |
O2' |
C2' |
C1' |
108.5 |
110.6 |
O2' |
C2' |
H2' |
107.6 |
110.4 |
C2' |
O2' |
H3 |
109.5 |
106.8 |
C1' |
C2' |
H2' |
115.7 |
110.5 |
C2' |
C1' |
N1 |
110.5 |
110.4 |
C2' |
C1' |
H1' |
115.4 |
110.4 |
N1 |
C1' |
H1' |
104.6 |
110.4 |
C1' |
N1 |
C2 |
126.4 |
125.0 |
C1' |
N1 |
C5 |
125.3 |
124.9 |
C2 |
N1 |
C5 |
108.3 |
110.1 |
N1 |
C2 |
N3 |
110.8 |
113.4 |
N1 |
C2 |
H2 |
124.6 |
123.3 |
N1 |
C5 |
C4 |
109.3 |
104.5 |
N1 |
C5 |
N6 |
124.9 |
127.7 |
N3 |
C2 |
H2 |
124.6 |
123.3 |
C2 |
N3 |
C4 |
107.4 |
108.2 |
N3 |
C4 |
C7 |
110.3 |
110.6 |
N3 |
C4 |
C5 |
97.7 |
103.9 |
N3 |
C4 |
H4 |
116.6 |
110.5 |
C7 |
C4 |
C5 |
110.4 |
110.5 |
C7 |
C4 |
H4 |
105.3 |
110.5 |
C4 |
C7 |
O9 |
117.4 |
120.0 |
C4 |
C7 |
O8 |
117.2 |
120.0 |
C5 |
C4 |
H4 |
116.6 |
110.7 |
C4 |
C5 |
N6 |
125.8 |
127.8 |
O9 |
C7 |
O8 |
125.4 |
120.0 |
C7 |
O9 |
HO9 |
109.5 |
120.0 |
C5 |
N6 |
HN6 |
106.7 |
120.0 |
Torsion Angles for ICR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O7' |
P |
O6' |
O8' |
236.0 |
240.0 |
O7' |
P |
O6' |
O5' |
111.7 |
120.0 |
O8' |
P |
O6' |
O5' |
235.6 |
240.1 |
O6' |
P |
O8' |
H8' |
293.2 |
60.0 |
O6' |
P |
O5' |
C5' |
297.1 |
175.0 |
H6' |
O6' |
P |
O7' |
83.6 |
300.0 |
H6' |
O6' |
P |
O8' |
207.6 |
60.1 |
H6' |
O6' |
P |
O5' |
331.9 |
180.0 |
O7' |
P |
O6' |
H6' |
83.6 |
300.0 |
O6' |
P |
O7' |
O8' |
124.0 |
120.0 |
O6' |
P |
O7' |
O5' |
247.9 |
240.0 |
O8' |
P |
O7' |
O5' |
123.9 |
120.0 |
O7' |
P |
O8' |
H8' |
53.1 |
180.0 |
O7' |
P |
O5' |
C5' |
185.2 |
55.0 |
O8' |
P |
O6' |
H6' |
207.6 |
60.1 |
O6' |
P |
O8' |
O7' |
240.1 |
240.0 |
O6' |
P |
O8' |
O5' |
120.5 |
120.0 |
O7' |
P |
O8' |
O5' |
240.4 |
240.0 |
O8' |
P |
O5' |
C5' |
61.3 |
295.0 |
O5' |
P |
O6' |
H6' |
331.9 |
180.0 |
O6' |
P |
O5' |
O7' |
111.9 |
120.0 |
O6' |
P |
O5' |
O8' |
235.7 |
240.0 |
O7' |
P |
O5' |
O8' |
123.8 |
120.0 |
O5' |
P |
O8' |
H8' |
172.7 |
300.0 |
P |
O5' |
C5' |
C4' |
178.0 |
180.0 |
P |
O5' |
C5' |
H5'1 |
58.2 |
60.0 |
P |
O5' |
C5' |
H5'2 |
298.0 |
300.1 |
H8' |
O8' |
P |
O5' |
172.7 |
300.0 |
C4' |
C5' |
O5' |
H5'1 |
119.9 |
120.0 |
C4' |
C5' |
O5' |
H5'2 |
240.0 |
239.9 |
O5' |
C5' |
C4' |
O4' |
307.4 |
66.5 |
O5' |
C5' |
C4' |
C3' |
63.6 |
181.9 |
O5' |
C5' |
C4' |
H4' |
185.1 |
304.2 |
H5'1 |
C5' |
O5' |
H5'2 |
120.2 |
120.0 |
O5' |
C5' |
C4' |
H5'1 |
240.2 |
240.1 |
O5' |
C5' |
C4' |
H5'2 |
120.0 |
120.1 |
H5'1 |
C5' |
C4' |
H5'2 |
239.8 |
240.0 |
O4' |
C4' |
C5' |
C3' |
243.8 |
244.6 |
O4' |
C4' |
C5' |
H4' |
122.3 |
122.3 |
C5' |
C4' |
O4' |
C1' |
151.9 |
159.5 |
C3' |
C4' |
C5' |
H4' |
238.6 |
237.6 |
C5' |
C4' |
C3' |
O3' |
123.0 |
98.6 |
C5' |
C4' |
C3' |
C2' |
239.7 |
217.3 |
C5' |
C4' |
C3' |
H3' |
2.9 |
336.0 |
O5' |
C5' |
H5'1 |
C4' |
120.2 |
120.0 |
O5' |
C5' |
H5'1 |
H5'2 |
240.1 |
240.0 |
C4' |
C5' |
H5'1 |
H5'2 |
119.9 |
120.0 |
H5'1 |
C5' |
C4' |
O4' |
67.2 |
186.4 |
H5'1 |
C5' |
C4' |
C3' |
183.5 |
301.8 |
H5'1 |
C5' |
C4' |
H4' |
304.9 |
64.2 |
O5' |
C5' |
H5'2 |
C4' |
239.7 |
239.9 |
O5' |
C5' |
H5'2 |
H5'1 |
119.8 |
119.9 |
C4' |
C5' |
H5'2 |
H5'1 |
240.1 |
240.0 |
H5'2 |
C5' |
C4' |
O4' |
187.4 |
306.4 |
H5'2 |
C5' |
C4' |
C3' |
303.7 |
61.8 |
H5'2 |
C5' |
C4' |
H4' |
65.1 |
184.2 |
O4' |
C4' |
C5' |
H5'1 |
67.2 |
186.4 |
O4' |
C4' |
C5' |
H5'2 |
187.4 |
306.4 |
C5' |
C4' |
O4' |
C3' |
119.2 |
119.1 |
C5' |
C4' |
O4' |
H4' |
240.5 |
237.8 |
C3' |
C4' |
O4' |
H4' |
121.3 |
118.7 |
O4' |
C4' |
C3' |
O3' |
241.2 |
217.5 |
O4' |
C4' |
C3' |
C2' |
357.9 |
336.2 |
O4' |
C4' |
C3' |
H3' |
121.1 |
94.9 |
C4' |
O4' |
C1' |
C2' |
310.1 |
319.5 |
C4' |
O4' |
C1' |
N1 |
192.8 |
200.7 |
C4' |
O4' |
C1' |
H1' |
74.2 |
78.4 |
C3' |
C4' |
C5' |
H5'1 |
183.5 |
301.8 |
C3' |
C4' |
C5' |
H5'2 |
303.7 |
61.8 |
C5' |
C4' |
C3' |
O4' |
241.8 |
241.1 |
C5' |
C4' |
C3' |
H4' |
119.5 |
122.4 |
O4' |
C4' |
C3' |
H4' |
237.8 |
241.3 |
C3' |
C4' |
O4' |
C1' |
32.6 |
40.4 |
O3' |
C3' |
C4' |
C2' |
243.3 |
241.3 |
O3' |
C3' |
C4' |
H3' |
120.1 |
122.6 |
C4' |
C3' |
O3' |
H1 |
242.1 |
178.1 |
C2' |
C3' |
C4' |
H3' |
236.8 |
241.3 |
C4' |
C3' |
C2' |
O2' |
219.2 |
241.2 |
C4' |
C3' |
C2' |
C1' |
333.2 |
359.9 |
C4' |
C3' |
C2' |
H2' |
98.1 |
118.6 |
H4' |
C4' |
C5' |
H5'1 |
304.9 |
64.2 |
H4' |
C4' |
C5' |
H5'2 |
65.1 |
184.2 |
C5' |
C4' |
H4' |
O4' |
120.3 |
122.2 |
C5' |
C4' |
H4' |
C3' |
238.7 |
237.4 |
O4' |
C4' |
H4' |
C3' |
118.4 |
115.2 |
H4' |
C4' |
O4' |
C1' |
271.4 |
281.7 |
H4' |
C4' |
C3' |
O3' |
3.4 |
336.2 |
H4' |
C4' |
C3' |
C2' |
120.1 |
94.9 |
H4' |
C4' |
C3' |
H3' |
243.3 |
213.6 |
C1' |
O4' |
C4' |
C3' |
32.6 |
40.4 |
C1' |
O4' |
C4' |
H4' |
271.4 |
281.7 |
C3' |
C2' |
C1' |
O4' |
46.9 |
24.0 |
O2' |
C2' |
C1' |
O4' |
161.8 |
142.7 |
O4' |
C1' |
C2' |
H2' |
282.8 |
265.3 |
C2' |
C1' |
O4' |
N1 |
117.3 |
118.9 |
C2' |
C1' |
O4' |
H1' |
235.9 |
241.2 |
N1 |
C1' |
O4' |
H1' |
118.6 |
122.3 |
O4' |
C1' |
N1 |
C2 |
85.7 |
50.4 |
O4' |
C1' |
N1 |
C5 |
264.7 |
230.1 |
O3' |
C3' |
C4' |
H4' |
3.4 |
336.2 |
C4' |
C3' |
O3' |
C2' |
112.6 |
114.8 |
C4' |
C3' |
O3' |
H3' |
236.3 |
237.4 |
C2' |
C3' |
O3' |
H3' |
123.7 |
122.6 |
O3' |
C3' |
C2' |
O2' |
336.0 |
359.9 |
O3' |
C3' |
C2' |
C1' |
90.0 |
118.6 |
O3' |
C3' |
C2' |
H2' |
214.8 |
237.3 |
C2' |
C3' |
C4' |
H4' |
120.1 |
94.9 |
C4' |
C3' |
C2' |
O3' |
243.3 |
241.3 |
C4' |
C3' |
C2' |
H3' |
123.2 |
118.7 |
O4' |
C1' |
C2' |
C3' |
46.9 |
24.0 |
O3' |
C3' |
C2' |
H3' |
239.9 |
237.4 |
C2' |
C3' |
O3' |
H1 |
129.5 |
63.3 |
O2' |
C2' |
C3' |
C1' |
246.0 |
241.2 |
O2' |
C2' |
C3' |
H2' |
121.1 |
122.5 |
C3' |
C2' |
O2' |
H3 |
310.7 |
298.5 |
C1' |
C2' |
C3' |
H2' |
235.1 |
241.3 |
C3' |
C2' |
C1' |
N1 |
165.3 |
142.9 |
C3' |
C2' |
C1' |
H1' |
283.8 |
265.2 |
H3' |
C3' |
C4' |
H4' |
243.3 |
213.6 |
C4' |
C3' |
H3' |
O3' |
121.4 |
122.6 |
C4' |
C3' |
H3' |
C2' |
242.7 |
245.2 |
O3' |
C3' |
H3' |
C2' |
121.3 |
122.6 |
H3' |
C3' |
O3' |
H1 |
5.8 |
300.7 |
H3' |
C3' |
C2' |
O2' |
96.1 |
122.4 |
H3' |
C3' |
C2' |
C1' |
210.1 |
241.2 |
H3' |
C3' |
C2' |
H2' |
334.9 |
359.9 |
H1 |
O3' |
C3' |
C2' |
129.5 |
63.3 |
H1 |
O3' |
C3' |
H3' |
5.8 |
300.7 |
O4' |
C1' |
C2' |
O2' |
161.8 |
142.7 |
O2' |
C2' |
C3' |
H3' |
96.1 |
122.4 |
C3' |
C2' |
O2' |
C1' |
108.8 |
114.7 |
C3' |
C2' |
O2' |
H2' |
234.7 |
237.4 |
C1' |
C2' |
O2' |
H2' |
125.9 |
122.7 |
O2' |
C2' |
C1' |
N1 |
280.2 |
261.6 |
O2' |
C2' |
C1' |
H1' |
38.6 |
23.9 |
O4' |
C1' |
C2' |
N1 |
241.7 |
241.1 |
O4' |
C1' |
C2' |
H1' |
123.2 |
118.8 |
C1' |
C2' |
C3' |
H3' |
210.1 |
241.2 |
C3' |
C2' |
C1' |
O2' |
245.1 |
241.3 |
C3' |
C2' |
C1' |
H2' |
124.2 |
118.7 |
O2' |
C2' |
C1' |
H2' |
239.0 |
237.4 |
C1' |
C2' |
O2' |
H3 |
201.9 |
183.8 |
N1 |
C1' |
C2' |
H1' |
241.5 |
237.7 |
C2' |
C1' |
N1 |
C2 |
334.6 |
295.1 |
C2' |
C1' |
N1 |
C5 |
153.6 |
114.7 |
H2' |
C2' |
C3' |
H3' |
334.9 |
359.9 |
C3' |
C2' |
H2' |
O2' |
122.2 |
122.6 |
C3' |
C2' |
H2' |
C1' |
243.6 |
245.3 |
O2' |
C2' |
H2' |
C1' |
121.4 |
122.7 |
H2' |
C2' |
O2' |
H3 |
76.1 |
61.1 |
H2' |
C2' |
C1' |
N1 |
41.1 |
24.2 |
H2' |
C2' |
C1' |
H1' |
159.6 |
146.5 |
H3 |
O2' |
C2' |
C1' |
201.9 |
183.8 |
H3 |
O2' |
C2' |
H2' |
76.1 |
61.1 |
O4' |
C1' |
N1 |
C2' |
111.1 |
115.4 |
O4' |
C1' |
N1 |
H1' |
235.9 |
237.7 |
N1 |
C1' |
C2' |
H2' |
41.1 |
24.2 |
C2' |
C1' |
N1 |
H1' |
124.8 |
122.3 |
C2 |
N1 |
C1' |
C5 |
181.0 |
180.3 |
C1' |
N1 |
C2 |
N3 |
196.4 |
180.0 |
C1' |
N1 |
C2 |
H2 |
16.4 |
360.0 |
C1' |
N1 |
C5 |
C4 |
179.9 |
179.9 |
C1' |
N1 |
C5 |
N6 |
0.0 |
0.3 |
O4' |
C1' |
H1' |
C2' |
244.4 |
244.7 |
O4' |
C1' |
H1' |
N1 |
122.7 |
122.3 |
H1' |
C1' |
C2' |
H2' |
159.6 |
146.5 |
C2' |
C1' |
H1' |
N1 |
238.3 |
237.7 |
H1' |
C1' |
N1 |
C2 |
209.8 |
172.7 |
H1' |
C1' |
N1 |
C5 |
28.8 |
352.4 |
C2 |
N1 |
C1' |
H1' |
209.8 |
172.7 |
C1' |
N1 |
C2 |
C5 |
179.1 |
179.7 |
C2 |
N1 |
C5 |
C4 |
359.1 |
359.6 |
C2 |
N1 |
C5 |
N6 |
179.2 |
180.0 |
N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
N1 |
C2 |
N3 |
C4 |
333.4 |
360.0 |
C5 |
N1 |
C1' |
H1' |
28.8 |
352.4 |
C1' |
N1 |
C5 |
C2 |
180.9 |
180.3 |
C5 |
N1 |
C2 |
N3 |
17.2 |
0.3 |
C5 |
N1 |
C2 |
H2 |
197.2 |
180.3 |
N3 |
C4 |
C5 |
N1 |
346.7 |
0.4 |
C7 |
C4 |
C5 |
N1 |
101.8 |
119.0 |
N1 |
C5 |
C4 |
H4 |
221.8 |
241.7 |
C4 |
C5 |
N1 |
N6 |
179.9 |
179.6 |
N1 |
C5 |
N6 |
HN6 |
360.0 |
179.5 |
N3 |
C2 |
N1 |
C5 |
17.2 |
0.3 |
N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
C7 |
267.8 |
241.2 |
C2 |
N3 |
C4 |
C5 |
22.9 |
359.8 |
C2 |
N3 |
C4 |
H4 |
147.9 |
118.6 |
H2 |
C2 |
N1 |
C5 |
197.2 |
180.3 |
N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
H2 |
C2 |
N3 |
C4 |
153.4 |
180.0 |
N1 |
C5 |
C4 |
N3 |
346.7 |
0.4 |
C4 |
N3 |
C2 |
H2 |
153.4 |
180.0 |
C7 |
C4 |
N3 |
C5 |
244.9 |
241.5 |
C7 |
C4 |
N3 |
H4 |
120.0 |
122.7 |
N3 |
C4 |
C7 |
O9 |
160.8 |
198.6 |
N3 |
C4 |
C7 |
O8 |
340.3 |
18.6 |
C5 |
C4 |
N3 |
H4 |
235.1 |
241.2 |
N3 |
C4 |
C5 |
N6 |
166.6 |
180.0 |
N1 |
C5 |
C4 |
C7 |
101.8 |
119.0 |
N3 |
C4 |
C7 |
C5 |
106.9 |
114.5 |
N3 |
C4 |
C7 |
H4 |
233.4 |
237.3 |
C5 |
C4 |
C7 |
H4 |
126.6 |
122.8 |
C7 |
C4 |
C5 |
N6 |
281.7 |
298.6 |
O9 |
C7 |
C4 |
O8 |
180.5 |
180.0 |
C4 |
C7 |
O9 |
HO9 |
179.4 |
180.0 |
N1 |
C5 |
C4 |
N6 |
180.1 |
180.4 |
N3 |
C4 |
C5 |
C7 |
245.0 |
241.4 |
N3 |
C4 |
C5 |
H4 |
125.0 |
118.7 |
C7 |
C4 |
C5 |
H4 |
240.0 |
237.3 |
C5 |
C4 |
C7 |
O9 |
53.9 |
84.1 |
C5 |
C4 |
C7 |
O8 |
233.4 |
264.1 |
C4 |
C5 |
N6 |
HN6 |
180.1 |
360.0 |
N3 |
C4 |
H4 |
C7 |
122.6 |
122.7 |
N3 |
C4 |
H4 |
C5 |
245.3 |
245.4 |
C7 |
C4 |
H4 |
C5 |
122.7 |
122.7 |
H4 |
C4 |
C7 |
O9 |
287.4 |
321.3 |
H4 |
C4 |
C7 |
O8 |
106.8 |
141.3 |
H4 |
C4 |
C5 |
N6 |
41.7 |
61.3 |
O9 |
C7 |
C4 |
C5 |
53.9 |
84.1 |
O9 |
C7 |
C4 |
H4 |
287.4 |
321.3 |
C4 |
C7 |
O9 |
O8 |
179.4 |
180.0 |
O8 |
C7 |
C4 |
C5 |
233.4 |
264.1 |
O8 |
C7 |
C4 |
H4 |
106.8 |
141.3 |
C4 |
C7 |
O8 |
O9 |
180.6 |
180.0 |
O8 |
C7 |
O9 |
HO9 |
360.0 |
360.0 |
HO9 |
O9 |
C7 |
O8 |
360.0 |
360.0 |
N1 |
C5 |
N6 |
C4 |
179.9 |
179.5 |
N6 |
C5 |
C4 |
H4 |
41.7 |
61.3 |