PDB Chemical Component IC

Ideal Model

Chemical Description

Name ISOCYTIDINE-5'-MONOPHOSPHATE
Formula C9 H14 N3 O8 P
Formal charge 0
Molecular weight 323.197 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 35
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2-amino-1-(5-O-phosphono-beta-D-ribofuranosyl)pyrimidin-4(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2-amino-4-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)C=CN1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)C=CN1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=CN(C(=NC1=O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H14N3O8P/c10-9-11-5(13)1-2-12(9)8-7(15)6(14)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,14-15H,3H2,(H2,10,11,13)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor ONSQLDCEJIIUJS-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 2000-11-07
Release status REL
Model PDB code 1G3A
Processing site RCSB