PDB Chemical Component IC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.479 1.480
P OP2 1.477 1.610
P OP3 1.617 1.609
P O5' 1.614 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.414 1.427
O3' C3' 1.419 1.430
O3' HO3' 0.950 0.966
C1' C2' 1.524 1.543
C1' O4' 1.423 1.444
C1' N1 1.492 1.465
C1' H1' 1.091 1.090
C2' C3' 1.526 1.545
C2' O2' 1.416 1.429
C2' H2' 1.088 1.091
C3' C4' 1.529 1.544
C3' H3' 1.092 1.090
C4' C5' 1.534 1.529
C4' O4' 1.424 1.445
C4' H4' 1.090 1.090
C5' H5' 1.090 1.090
C5' H5'' 1.091 1.090
O2' HO2' 0.962 0.967
N2 C2 1.337 1.370
N2 H21 1.007 0.970
N2 H22 1.016 0.971
C4 N3 1.364 1.339
C4 O4 1.224 1.222
C4 C5 1.450 1.418
N3 C2 1.336 1.318
C2 N1 1.396 1.358
N1 C6 1.373 1.365
C6 C5 1.354 1.351
C6 H6 1.079 1.080
C5 H5 1.079 1.080

Bond Angles for IC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.0 109.5
OP1 P OP3 107.7 109.5
OP1 P O5' 108.3 109.4
OP2 P OP3 108.0 109.4
OP2 P O5' 107.8 109.5
P OP2 HOP2 119.9 106.8
OP3 P O5' 104.0 109.5
P OP3 HOP3 107.7 106.8
P O5' C5' 122.1 106.8
O5' C5' C4' 110.8 109.5
O5' C5' H5' 109.5 109.5
O5' C5' H5'' 109.7 109.5
C3' O3' HO3' 110.8 106.8
O3' C3' C2' 110.9 110.5
O3' C3' C4' 113.7 110.5
O3' C3' H3' 111.8 110.4
C2' C1' O4' 106.6 104.9
C2' C1' N1 110.2 110.4
C2' C1' H1' 109.1 110.4
C1' C2' C3' 102.9 104.0
C1' C2' O2' 108.0 110.8
C1' C2' H2' 112.3 110.4
O4' C1' N1 114.0 110.4
O4' C1' H1' 108.0 110.4
C1' O4' C4' 109.6 105.2
N1 C1' H1' 108.7 110.3
C1' N1 C2 120.1 119.9
C1' N1 C6 122.1 119.8
C3' C2' O2' 112.0 110.5
C3' C2' H2' 111.1 110.5
C2' C3' C4' 100.0 104.1
C2' C3' H3' 110.3 110.6
O2' C2' H2' 110.3 110.5
C2' O2' HO2' 106.7 106.8
C4' C3' H3' 109.6 110.5
C3' C4' C5' 114.3 110.6
C3' C4' O4' 106.1 104.8
C3' C4' H4' 107.9 110.3
C5' C4' O4' 111.5 110.4
C5' C4' H4' 108.5 110.3
C4' C5' H5' 108.8 109.5
C4' C5' H5'' 109.4 109.5
O4' C4' H4' 108.3 110.3
H5' C5' H5'' 108.7 109.4
C2 N2 H21 121.1 120.0
C2 N2 H22 118.8 120.0
N2 C2 N3 115.8 119.4
N2 C2 N1 122.3 119.4
H21 N2 H22 119.9 120.0
N3 C4 O4 120.5 120.2
N3 C4 C5 114.7 119.6
C4 N3 C2 123.0 120.6
O4 C4 C5 124.7 120.2
C4 C5 C6 122.3 118.9
C4 C5 H5 118.1 120.6
N3 C2 N1 121.9 121.2
C2 N1 C6 117.8 120.4
N1 C6 C5 120.1 119.3
N1 C6 H6 120.7 120.4
C5 C6 H6 119.3 120.3
C6 C5 H5 119.6 120.5

Torsion Angles for IC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 124.0 120.0
OP2 P OP1 O5' 235.8 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 111.9 120.0
OP1 P OP3 HOP3 180.1 180.0
OP1 P O5' C5' 34.4 60.0
OP1 P OP2 OP3 236.2 240.0
OP1 P OP2 O5' 124.4 120.0
OP3 P OP2 O5' 248.2 240.0
OP2 P OP3 HOP3 49.1 60.0
OP2 P O5' C5' 165.6 180.0
OP1 P OP3 OP2 130.9 120.0
OP1 P OP3 O5' 245.3 240.0
OP2 P OP3 O5' 114.3 120.0
OP3 P OP2 HOP2 303.8 60.1
OP3 P O5' C5' 280.1 300.0
OP1 P O5' OP2 228.8 240.0
OP1 P O5' OP3 114.3 120.1
OP2 P O5' OP3 245.5 240.0
O5' P OP2 HOP2 55.6 180.1
O5' P OP3 HOP3 294.8 300.0
P O5' C5' C4' 171.6 180.0
P O5' C5' H5' 51.7 60.0
P O5' C5' H5'' 292.5 300.0
HOP2 OP2 P OP3 303.8 60.1
HOP2 OP2 P O5' 55.6 180.1
HOP3 OP3 P O5' 294.8 300.0
C3' C4' C5' O5' 68.5 176.9
O5' C5' C4' O4' 308.1 61.4
O5' C5' C4' H4' 188.9 299.2
C4' C5' O5' H5' 119.9 120.0
C4' C5' O5' H5'' 239.1 240.0
H5' C5' O5' H5'' 119.1 119.9
C1' C2' C3' O3' 156.5 118.9
O3' C3' C2' O2' 40.7 359.9
O3' C3' C2' H2' 276.9 237.4
C2' C3' O3' C4' 248.3 245.3
C2' C3' O3' H3' 123.5 122.7
C4' C3' O3' H3' 235.2 237.4
O3' C3' C4' C5' 82.7 98.3
O3' C3' C4' O4' 206.0 217.2
O3' C3' C4' H4' 321.9 336.0
HO3' O3' C3' C2' 180.0 65.3
HO3' O3' C3' C4' 291.8 180.1
HO3' O3' C3' H3' 56.6 302.6
O3' C3' C2' C1' 156.5 118.9
O4' C1' C2' N1 235.8 241.1
O4' C1' C2' H1' 116.5 118.9
C2' C1' O4' C4' 2.9 319.6
N1 C1' C2' H1' 240.7 237.8
C2' C1' N1 C2 79.4 90.4
C2' C1' N1 C6 260.3 270.9
C3' C2' C1' O2' 241.4 241.2
C3' C2' C1' H2' 119.5 118.5
C1' C2' C3' C4' 36.2 0.2
C1' C2' C3' H3' 280.8 241.5
O2' C2' C1' H2' 238.1 237.3
C1' C2' O2' HO2' 209.9 183.8
C2' C1' O4' N1 121.8 118.9
C2' C1' O4' H1' 242.8 241.1
O4' C1' C2' C3' 334.5 23.8
O4' C1' C2' O2' 93.0 142.6
O4' C1' C2' H2' 214.9 265.3
N1 C1' O4' H1' 121.0 122.1
O4' C1' N1 C2 199.2 206.0
O4' C1' N1 C6 20.2 26.4
C3' C4' O4' C1' 21.2 40.5
C5' C4' O4' C1' 146.3 159.5
C1' O4' C4' H4' 265.6 281.7
C2' C1' N1 O4' 240.1 244.4
C2' C1' N1 H1' 119.6 122.2
N1 C1' C2' C3' 98.7 142.8
N1 C1' C2' O2' 217.3 261.5
N1 C1' C2' H2' 339.2 24.2
O4' C1' N1 H1' 239.4 237.8
N1 C1' O4' C4' 241.0 200.7
N2 C2 N1 C1' 354.6 0.2
N3 C2 N1 C1' 176.1 180.0
C2 N1 C1' C6 179.1 179.6
C1' N1 C6 C5 183.4 180.0
C1' N1 C6 H6 3.1 359.8
C2' C1' H1' O4' 115.6 115.5
C2' C1' H1' N1 239.8 237.8
H1' C1' C2' C3' 218.0 264.9
H1' C1' C2' O2' 336.6 23.7
H1' C1' C2' H2' 98.5 146.4
O4' C1' H1' N1 124.2 122.2
H1' C1' O4' C4' 120.1 78.5
H1' C1' N1 C2 319.8 328.2
H1' C1' N1 C6 140.8 148.6
C2' C3' O3' HO3' 180.0 65.3
O3' C3' C2' C4' 120.3 118.7
O3' C3' C2' H3' 235.7 237.4
C3' C2' C1' O4' 334.5 23.8
C3' C2' C1' N1 98.7 142.8
C3' C2' C1' H1' 218.0 264.9
C1' C2' C3' O2' 115.8 119.0
C1' C2' C3' H2' 239.6 241.5
O2' C2' C3' H2' 123.8 122.5
C3' C2' O2' HO2' 322.5 298.6
C4' C3' C2' H3' 115.4 118.7
C2' C3' C4' C5' 200.9 217.0
C2' C3' C4' O4' 324.2 335.9
C2' C3' C4' H4' 80.1 94.7
O2' C2' C1' O4' 93.0 142.6
O2' C2' C1' N1 217.3 261.5
O2' C2' C1' H1' 336.6 23.7
C1' C2' O2' C3' 247.4 245.3
C1' C2' O2' H2' 123.1 122.7
C3' C2' O2' H2' 235.8 237.5
O2' C2' C3' C4' 280.5 241.2
O2' C2' C3' H3' 165.0 122.5
H2' C2' C1' O4' 214.9 265.3
H2' C2' C1' N1 339.2 24.2
H2' C2' C1' H1' 98.5 146.4
C1' C2' H2' C3' 114.7 114.5
C1' C2' H2' O2' 239.4 237.1
C3' C2' H2' O2' 124.7 122.6
H2' C2' C3' C4' 156.6 118.6
H2' C2' C3' H3' 41.2 360.0
H2' C2' O2' HO2' 86.8 61.1
O5' C5' C4' C3' 68.5 176.9
C4' C3' O3' HO3' 291.8 180.1
O3' C3' C4' C2' 241.8 241.3
O3' C3' C4' H3' 125.9 122.5
C1' O4' C4' C3' 21.2 40.5
C4' C3' C2' O2' 280.5 241.2
C4' C3' C2' H2' 156.6 118.6
C2' C3' C4' H3' 244.1 241.2
C5' C4' C3' O4' 236.7 241.1
C5' C4' C3' H4' 120.8 122.3
C3' C4' C5' H5' 188.8 296.9
C3' C4' C5' H5'' 307.4 56.8
O4' C4' C3' H4' 244.1 241.2
H3' C3' O3' HO3' 56.6 302.6
O3' C3' H3' C2' 123.8 122.7
O3' C3' H3' C4' 233.0 237.4
H3' C3' C2' O2' 165.0 122.5
H3' C3' C2' H2' 41.2 360.0
C2' C3' H3' C4' 109.2 114.7
H3' C3' C4' C5' 316.7 335.8
H3' C3' C4' O4' 80.1 94.7
H3' C3' C4' H4' 195.9 213.5
O5' C5' C4' H5' 239.6 240.0
O5' C5' C4' H5'' 121.0 120.1
C1' O4' C4' C5' 146.3 159.5
C5' C4' C3' H3' 316.7 335.8
C3' C4' C5' O4' 120.4 115.5
C3' C4' C5' H4' 239.6 237.7
O4' C4' C5' H4' 119.2 122.2
H5' C5' C4' H5'' 241.4 240.1
C4' O4' C1' N1 241.0 200.7
C4' O4' C1' H1' 120.1 78.5
O4' C4' C3' H3' 80.1 94.7
C3' C4' O4' C5' 234.9 241.0
C3' C4' O4' H4' 115.6 118.8
C5' C4' O4' H4' 240.7 237.8
O4' C4' C5' H5' 68.5 181.5
O4' C4' C5' H5'' 187.1 301.4
H4' C4' C3' H3' 195.9 213.5
C3' C4' H4' C5' 124.4 122.5
C3' C4' H4' O4' 245.6 244.7
C5' C4' H4' O4' 121.2 122.2
H4' C4' C5' H5' 309.3 59.3
H4' C4' C5' H5'' 67.9 179.2
O5' C5' H5' C4' 121.2 120.1
O5' C5' H5' H5'' 240.3 240.0
H5' C5' C4' O4' 68.5 181.5
H5' C5' C4' H4' 309.3 59.3
C4' C5' H5' H5'' 119.1 119.9
O5' C5' H5'' C4' 238.3 239.9
O5' C5' H5'' H5' 119.6 120.0
H5'' C5' C4' O4' 187.1 301.4
H5'' C5' C4' H4' 67.9 179.2
C4' C5' H5'' H5' 241.3 240.1
HO2' O2' C2' H2' 86.8 61.1
C1' N1 C2 N2 354.6 0.2
H21 N2 C2 H22 175.9 180.3
C4 N3 C2 N2 183.2 179.9
N3 C2 N2 N1 178.6 180.2
N2 C2 N1 C6 173.7 179.8
C2 N2 H21 H22 184.2 179.7
H21 N2 C2 N3 175.9 348.1
H21 N2 C2 N1 357.3 167.9
C2 N2 H22 H21 175.9 180.3
H22 N2 C2 N3 0.1 167.8
H22 N2 C2 N1 181.5 347.6
N2 C2 N3 C4 183.2 179.9
O4 C4 N3 C5 180.0 179.9
N3 C4 C5 C6 358.0 359.9
N3 C4 C5 H5 177.9 180.0
C4 N3 C2 N1 1.8 0.2
N3 C4 O4 C5 179.9 180.1
O4 C4 N3 C2 181.6 180.0
O4 C4 C5 C6 177.9 180.0
O4 C4 C5 H5 357.9 0.1
N3 C4 C5 O4 180.0 179.9
C5 C4 N3 C2 1.6 0.1
N1 C6 C5 C4 359.0 359.8
C4 C5 C6 H6 179.3 180.0
C6 C5 C4 H5 180.1 179.9
C1' N1 C2 N3 176.1 180.0
N3 C2 N2 H21 175.9 348.1
N3 C2 N2 H22 0.1 167.8
N2 C2 N3 N1 181.4 179.8
C2 N3 C4 O4 181.6 180.0
C2 N3 C4 C5 1.6 0.1
N3 C2 N1 C6 355.2 359.6
C2 N1 C1' H1' 319.8 328.2
C1' N1 C2 C6 180.9 180.4
N1 C2 N2 H21 357.3 167.9
N1 C2 N2 H22 181.5 347.6
N2 C2 N1 N3 178.5 180.2
C2 N1 C6 C5 4.3 0.5
C2 N1 C6 H6 184.0 180.3
C6 N1 C1' H1' 140.8 148.6
C1' N1 C6 C2 179.1 179.6
C4 C5 C6 N1 359.0 359.8
C5 C6 N1 H6 180.3 180.2
N1 C6 C5 H5 179.1 179.7
C4 C5 C6 H5 179.9 180.1
N1 C6 C5 H6 179.7 179.8
N1 C6 H6 C5 180.3 180.2
H6 C6 C5 H5 359.4 359.9
C4 C5 H5 C6 180.1 179.9
H5 C5 C6 H6 359.4 359.9