PDB Chemical Component IBP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IBP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C6 |
1.520 |
1.506 |
C1 |
O1 |
1.301 |
1.342 |
C1 |
O2 |
1.223 |
1.208 |
C2 |
C3 |
1.535 |
1.529 |
C2 |
C11 |
1.522 |
1.507 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.115 |
1.090 |
C3 |
C4 |
1.526 |
1.530 |
C3 |
C5 |
1.515 |
1.529 |
C3 |
H31 |
1.115 |
1.090 |
C4 |
H41 |
1.114 |
1.089 |
C4 |
H42 |
1.115 |
1.090 |
C4 |
H43 |
1.116 |
1.089 |
C5 |
H51 |
1.114 |
1.090 |
C5 |
H52 |
1.115 |
1.090 |
C5 |
H53 |
1.116 |
1.090 |
C6 |
C7 |
1.526 |
1.529 |
C6 |
C8 |
1.547 |
1.507 |
C6 |
H61 |
1.115 |
1.090 |
C7 |
H71 |
1.115 |
1.091 |
C7 |
H72 |
1.115 |
1.089 |
C7 |
H73 |
1.115 |
1.090 |
C8 |
C9 |
1.412 |
1.382 |
C8 |
C13 |
1.420 |
1.381 |
C9 |
C10 |
1.415 |
1.381 |
C9 |
H91 |
1.102 |
1.080 |
C10 |
C11 |
1.420 |
1.382 |
C10 |
H101 |
1.103 |
1.080 |
C11 |
C12 |
1.410 |
1.382 |
C12 |
C13 |
1.417 |
1.382 |
C12 |
H121 |
1.103 |
1.079 |
C13 |
H131 |
1.103 |
1.080 |
O1 |
HO1 |
0.949 |
0.967 |
Bond Angles for IBP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
O1 |
114.4 |
120.0 |
C6 |
C1 |
O2 |
123.6 |
120.0 |
C1 |
C6 |
C7 |
111.1 |
109.5 |
C1 |
C6 |
C8 |
109.0 |
109.5 |
C1 |
C6 |
H61 |
110.1 |
109.4 |
O1 |
C1 |
O2 |
122.0 |
120.0 |
C1 |
O1 |
HO1 |
114.4 |
120.0 |
C3 |
C2 |
C11 |
115.0 |
109.5 |
C3 |
C2 |
H21 |
110.2 |
109.4 |
C3 |
C2 |
H22 |
110.2 |
109.5 |
C2 |
C3 |
C4 |
110.1 |
109.5 |
C2 |
C3 |
C5 |
111.1 |
109.5 |
C2 |
C3 |
H31 |
107.8 |
109.5 |
C11 |
C2 |
H21 |
110.2 |
109.5 |
C11 |
C2 |
H22 |
110.2 |
109.5 |
C2 |
C11 |
C10 |
120.9 |
120.0 |
C2 |
C11 |
C12 |
121.8 |
120.0 |
H21 |
C2 |
H22 |
100.0 |
109.4 |
C4 |
C3 |
C5 |
109.4 |
109.5 |
C4 |
C3 |
H31 |
109.6 |
109.4 |
C3 |
C4 |
H41 |
110.2 |
109.5 |
C3 |
C4 |
H42 |
112.0 |
109.5 |
C3 |
C4 |
H43 |
112.0 |
109.5 |
C5 |
C3 |
H31 |
108.7 |
109.5 |
C3 |
C5 |
H51 |
111.1 |
109.5 |
C3 |
C5 |
H52 |
111.6 |
109.5 |
C3 |
C5 |
H53 |
111.6 |
109.5 |
H41 |
C4 |
H42 |
112.0 |
109.4 |
H41 |
C4 |
H43 |
112.0 |
109.4 |
H42 |
C4 |
H43 |
98.4 |
109.5 |
H51 |
C5 |
H52 |
111.7 |
109.5 |
H51 |
C5 |
H53 |
111.6 |
109.4 |
H52 |
C5 |
H53 |
98.7 |
109.4 |
C7 |
C6 |
C8 |
113.2 |
109.5 |
C7 |
C6 |
H61 |
105.5 |
109.5 |
C6 |
C7 |
H71 |
111.1 |
109.4 |
C6 |
C7 |
H72 |
111.7 |
109.5 |
C6 |
C7 |
H73 |
111.6 |
109.5 |
C8 |
C6 |
H61 |
107.8 |
109.5 |
C6 |
C8 |
C9 |
120.1 |
120.0 |
C6 |
C8 |
C13 |
122.7 |
120.0 |
H71 |
C7 |
H72 |
111.6 |
109.5 |
H71 |
C7 |
H73 |
111.6 |
109.5 |
H72 |
C7 |
H73 |
98.8 |
109.5 |
C9 |
C8 |
C13 |
117.2 |
120.0 |
C8 |
C9 |
C10 |
121.3 |
120.0 |
C8 |
C9 |
H91 |
119.3 |
120.0 |
C8 |
C13 |
C12 |
121.5 |
120.0 |
C8 |
C13 |
H131 |
119.4 |
120.0 |
C10 |
C9 |
H91 |
119.5 |
120.0 |
C9 |
C10 |
C11 |
121.5 |
120.0 |
C9 |
C10 |
H101 |
119.1 |
120.0 |
C11 |
C10 |
H101 |
119.4 |
120.0 |
C10 |
C11 |
C12 |
117.3 |
120.0 |
C11 |
C12 |
C13 |
121.2 |
120.0 |
C11 |
C12 |
H121 |
119.1 |
120.0 |
C13 |
C12 |
H121 |
119.6 |
120.0 |
C12 |
C13 |
H131 |
119.1 |
120.0 |
Torsion Angles for IBP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C6 |
O2 |
178.9 |
180.1 |
C6 |
C1 |
O1 |
HO1 |
180.0 |
180.0 |
C7 |
C6 |
C1 |
C8 |
234.6 |
239.9 |
C7 |
C6 |
C1 |
H61 |
116.5 |
120.0 |
C1 |
C6 |
C7 |
H71 |
180.0 |
60.0 |
C1 |
C6 |
C7 |
H72 |
305.3 |
180.0 |
C1 |
C6 |
C7 |
H73 |
54.8 |
300.0 |
C8 |
C6 |
C1 |
H61 |
241.9 |
240.0 |
C1 |
C6 |
C8 |
C9 |
102.0 |
120.0 |
C1 |
C6 |
C8 |
C13 |
281.3 |
299.9 |
C6 |
C1 |
O1 |
O2 |
181.1 |
179.9 |
O1 |
C1 |
C6 |
C7 |
138.3 |
60.0 |
O1 |
C1 |
C6 |
C8 |
263.8 |
180.0 |
O1 |
C1 |
C6 |
H61 |
21.8 |
300.0 |
C6 |
C1 |
O2 |
O1 |
178.8 |
180.1 |
O2 |
C1 |
C6 |
C7 |
319.5 |
239.9 |
O2 |
C1 |
C6 |
C8 |
84.9 |
360.0 |
O2 |
C1 |
C6 |
H61 |
203.0 |
120.0 |
O2 |
C1 |
O1 |
HO1 |
358.9 |
0.1 |
C11 |
C2 |
C3 |
H21 |
234.7 |
240.0 |
C11 |
C2 |
C3 |
H22 |
125.3 |
120.0 |
C3 |
C2 |
C11 |
C10 |
257.6 |
90.0 |
C3 |
C2 |
C11 |
C12 |
77.6 |
269.7 |
H21 |
C2 |
C3 |
H22 |
250.6 |
240.0 |
C4 |
C3 |
C2 |
C5 |
121.4 |
240.0 |
C4 |
C3 |
C2 |
H31 |
240.4 |
120.0 |
C2 |
C3 |
C4 |
H41 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
H42 |
305.3 |
300.0 |
C2 |
C3 |
C4 |
H43 |
54.7 |
60.0 |
C5 |
C3 |
C2 |
H31 |
119.0 |
240.0 |
C2 |
C3 |
C5 |
H51 |
180.0 |
300.0 |
C2 |
C3 |
C5 |
H52 |
305.3 |
60.0 |
C2 |
C3 |
C5 |
H53 |
54.7 |
180.0 |
C3 |
C2 |
C11 |
H21 |
125.3 |
120.0 |
C3 |
C2 |
C11 |
H22 |
234.7 |
240.0 |
C11 |
C2 |
C3 |
C4 |
209.7 |
180.0 |
C11 |
C2 |
C3 |
C5 |
88.3 |
300.0 |
C11 |
C2 |
C3 |
H31 |
329.3 |
60.0 |
H21 |
C2 |
C11 |
H22 |
109.4 |
120.0 |
C9 |
C10 |
C11 |
C2 |
180.2 |
180.0 |
C2 |
C11 |
C10 |
H101 |
0.1 |
360.0 |
C10 |
C11 |
C2 |
C12 |
180.0 |
180.3 |
C2 |
C11 |
C12 |
C13 |
179.8 |
179.8 |
C2 |
C11 |
C12 |
H121 |
359.9 |
0.3 |
C3 |
C2 |
H21 |
C11 |
232.0 |
240.0 |
C3 |
C2 |
H21 |
H22 |
116.0 |
120.0 |
H21 |
C2 |
C3 |
C4 |
334.9 |
300.0 |
H21 |
C2 |
C3 |
C5 |
213.6 |
60.0 |
H21 |
C2 |
C3 |
H31 |
94.5 |
180.0 |
C11 |
C2 |
H21 |
H22 |
244.0 |
240.0 |
H21 |
C2 |
C11 |
C10 |
132.3 |
330.0 |
H21 |
C2 |
C11 |
C12 |
312.3 |
149.7 |
C3 |
C2 |
H22 |
C11 |
128.0 |
120.0 |
C3 |
C2 |
H22 |
H21 |
244.0 |
240.0 |
H22 |
C2 |
C3 |
C4 |
84.3 |
60.0 |
H22 |
C2 |
C3 |
C5 |
323.0 |
180.0 |
H22 |
C2 |
C3 |
H31 |
203.9 |
300.0 |
C11 |
C2 |
H22 |
H21 |
116.0 |
120.0 |
H22 |
C2 |
C11 |
C10 |
22.9 |
210.0 |
H22 |
C2 |
C11 |
C12 |
202.9 |
29.7 |
C4 |
C3 |
C2 |
C11 |
209.7 |
180.0 |
C4 |
C3 |
C2 |
H21 |
334.9 |
300.0 |
C4 |
C3 |
C2 |
H22 |
84.3 |
60.0 |
C2 |
C3 |
C4 |
C5 |
237.6 |
120.0 |
C2 |
C3 |
C4 |
H31 |
118.5 |
240.0 |
C5 |
C3 |
C4 |
H31 |
240.9 |
120.0 |
C4 |
C3 |
C5 |
H51 |
58.1 |
60.0 |
C4 |
C3 |
C5 |
H52 |
183.5 |
180.0 |
C4 |
C3 |
C5 |
H53 |
292.9 |
300.0 |
H41 |
C4 |
C3 |
H42 |
234.7 |
240.0 |
H41 |
C4 |
C3 |
H43 |
125.3 |
120.0 |
H42 |
C4 |
C3 |
H43 |
250.6 |
240.0 |
C5 |
C3 |
C2 |
C11 |
88.3 |
300.0 |
C5 |
C3 |
C2 |
H21 |
213.6 |
60.0 |
C5 |
C3 |
C2 |
H22 |
323.0 |
180.0 |
C2 |
C3 |
C5 |
C4 |
121.8 |
240.0 |
C2 |
C3 |
C5 |
H31 |
241.5 |
120.0 |
C4 |
C3 |
C5 |
H31 |
119.7 |
240.1 |
C5 |
C3 |
C4 |
H41 |
302.4 |
60.0 |
C5 |
C3 |
C4 |
H42 |
67.7 |
180.0 |
C5 |
C3 |
C4 |
H43 |
177.1 |
300.0 |
H51 |
C5 |
C3 |
H52 |
234.7 |
240.0 |
H51 |
C5 |
C3 |
H53 |
125.3 |
120.0 |
H52 |
C5 |
C3 |
H53 |
250.6 |
240.0 |
H31 |
C3 |
C2 |
C11 |
329.3 |
60.0 |
H31 |
C3 |
C2 |
H21 |
94.5 |
180.0 |
H31 |
C3 |
C2 |
H22 |
203.9 |
300.0 |
C2 |
C3 |
H31 |
C4 |
240.1 |
120.0 |
C2 |
C3 |
H31 |
C5 |
120.6 |
240.0 |
C4 |
C3 |
H31 |
C5 |
240.5 |
120.0 |
H31 |
C3 |
C4 |
H41 |
61.5 |
300.0 |
H31 |
C3 |
C4 |
H42 |
186.8 |
60.0 |
H31 |
C3 |
C4 |
H43 |
296.2 |
180.0 |
H31 |
C3 |
C5 |
H51 |
298.5 |
179.9 |
H31 |
C3 |
C5 |
H52 |
63.8 |
299.9 |
H31 |
C3 |
C5 |
H53 |
173.2 |
60.0 |
H41 |
C4 |
C3 |
C5 |
302.4 |
60.0 |
H41 |
C4 |
C3 |
H31 |
61.5 |
300.0 |
C3 |
C4 |
H41 |
H42 |
125.3 |
120.0 |
C3 |
C4 |
H41 |
H43 |
234.7 |
240.0 |
H42 |
C4 |
H41 |
H43 |
109.4 |
120.0 |
H42 |
C4 |
C3 |
C5 |
67.7 |
180.0 |
H42 |
C4 |
C3 |
H31 |
186.8 |
60.0 |
C3 |
C4 |
H42 |
H41 |
235.7 |
240.0 |
C3 |
C4 |
H42 |
H43 |
117.9 |
120.0 |
H41 |
C4 |
H42 |
H43 |
242.2 |
240.0 |
H43 |
C4 |
C3 |
C5 |
177.1 |
300.0 |
H43 |
C4 |
C3 |
H31 |
296.2 |
180.0 |
C3 |
C4 |
H43 |
H41 |
124.3 |
120.0 |
C3 |
C4 |
H43 |
H42 |
242.1 |
240.0 |
H41 |
C4 |
H43 |
H42 |
117.8 |
120.0 |
H51 |
C5 |
C3 |
H31 |
298.5 |
179.9 |
C3 |
C5 |
H51 |
H52 |
125.3 |
120.0 |
C3 |
C5 |
H51 |
H53 |
234.8 |
240.0 |
H52 |
C5 |
H51 |
H53 |
109.5 |
120.0 |
H52 |
C5 |
C3 |
H31 |
63.8 |
299.9 |
C3 |
C5 |
H52 |
H51 |
235.0 |
240.0 |
C3 |
C5 |
H52 |
H53 |
117.4 |
120.1 |
H51 |
C5 |
H52 |
H53 |
242.5 |
240.0 |
H53 |
C5 |
C3 |
H31 |
173.2 |
60.0 |
C3 |
C5 |
H53 |
H51 |
125.0 |
120.0 |
C3 |
C5 |
H53 |
H52 |
242.5 |
240.0 |
H51 |
C5 |
H53 |
H52 |
117.6 |
120.0 |
C7 |
C6 |
C1 |
O1 |
138.3 |
60.0 |
C7 |
C6 |
C1 |
O2 |
319.5 |
239.9 |
C1 |
C6 |
C7 |
C8 |
123.0 |
120.0 |
C1 |
C6 |
C7 |
H61 |
240.7 |
240.0 |
C8 |
C6 |
C7 |
H61 |
117.7 |
120.0 |
C7 |
C6 |
C8 |
C9 |
226.2 |
240.1 |
C7 |
C6 |
C8 |
C13 |
45.4 |
60.0 |
H71 |
C7 |
C6 |
H72 |
234.7 |
240.0 |
H71 |
C7 |
C6 |
H73 |
125.2 |
120.0 |
H72 |
C7 |
C6 |
H73 |
250.5 |
240.0 |
C8 |
C6 |
C1 |
O1 |
263.8 |
180.0 |
C8 |
C6 |
C1 |
O2 |
84.9 |
360.0 |
C1 |
C6 |
C8 |
C7 |
235.8 |
240.0 |
C1 |
C6 |
C8 |
H61 |
119.5 |
120.0 |
C7 |
C6 |
C8 |
H61 |
243.7 |
240.0 |
C8 |
C6 |
C7 |
H71 |
57.0 |
300.0 |
C8 |
C6 |
C7 |
H72 |
182.2 |
60.0 |
C8 |
C6 |
C7 |
H73 |
291.7 |
180.0 |
C9 |
C8 |
C6 |
C13 |
180.7 |
180.1 |
C6 |
C8 |
C9 |
C10 |
179.3 |
179.9 |
C6 |
C8 |
C9 |
H91 |
359.3 |
360.0 |
C6 |
C8 |
C13 |
C12 |
180.7 |
179.8 |
C6 |
C8 |
C13 |
H131 |
0.6 |
0.1 |
H61 |
C6 |
C1 |
O1 |
21.8 |
300.0 |
H61 |
C6 |
C1 |
O2 |
203.0 |
120.0 |
C1 |
C6 |
H61 |
C7 |
119.9 |
120.0 |
C1 |
C6 |
H61 |
C8 |
241.2 |
240.0 |
C7 |
C6 |
H61 |
C8 |
121.3 |
120.0 |
H61 |
C6 |
C7 |
H71 |
299.3 |
180.0 |
H61 |
C6 |
C7 |
H72 |
64.6 |
300.0 |
H61 |
C6 |
C7 |
H73 |
174.1 |
60.0 |
H61 |
C6 |
C8 |
C9 |
342.5 |
0.1 |
H61 |
C6 |
C8 |
C13 |
161.8 |
180.0 |
H71 |
C7 |
C6 |
C8 |
57.0 |
300.0 |
H71 |
C7 |
C6 |
H61 |
299.3 |
180.0 |
C6 |
C7 |
H71 |
H72 |
125.3 |
120.0 |
C6 |
C7 |
H71 |
H73 |
234.7 |
240.0 |
H72 |
C7 |
H71 |
H73 |
109.4 |
120.0 |
H72 |
C7 |
C6 |
C8 |
182.2 |
60.0 |
H72 |
C7 |
C6 |
H61 |
64.6 |
300.0 |
C6 |
C7 |
H72 |
H71 |
235.0 |
240.0 |
C6 |
C7 |
H72 |
H73 |
117.6 |
120.0 |
H71 |
C7 |
H72 |
H73 |
242.5 |
240.0 |
H73 |
C7 |
C6 |
C8 |
291.7 |
180.0 |
H73 |
C7 |
C6 |
H61 |
174.1 |
60.0 |
C6 |
C7 |
H73 |
H71 |
125.0 |
120.0 |
C6 |
C7 |
H73 |
H72 |
242.4 |
240.0 |
H71 |
C7 |
H73 |
H72 |
117.5 |
120.0 |
C9 |
C8 |
C6 |
H61 |
342.5 |
0.1 |
C6 |
C8 |
C9 |
C13 |
179.3 |
179.9 |
C9 |
C8 |
C13 |
C12 |
0.0 |
359.7 |
C9 |
C8 |
C13 |
H131 |
179.9 |
180.0 |
C10 |
C9 |
C8 |
H91 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
C11 |
359.9 |
360.0 |
C8 |
C9 |
C10 |
H101 |
180.0 |
180.0 |
C13 |
C8 |
C6 |
H61 |
161.8 |
180.0 |
C6 |
C8 |
C13 |
C9 |
180.7 |
180.1 |
C13 |
C8 |
C9 |
C10 |
0.0 |
0.0 |
C13 |
C8 |
C9 |
H91 |
180.0 |
180.0 |
C11 |
C12 |
C13 |
C8 |
0.0 |
0.5 |
C8 |
C13 |
C12 |
H121 |
180.0 |
180.0 |
C12 |
C13 |
C8 |
H131 |
180.1 |
179.8 |
C2 |
C11 |
C10 |
C9 |
180.2 |
180.0 |
C10 |
C9 |
C8 |
C13 |
0.0 |
0.0 |
C8 |
C9 |
C10 |
H91 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
H101 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
C12 |
0.1 |
0.3 |
H91 |
C9 |
C8 |
C13 |
180.0 |
180.0 |
C8 |
C9 |
H91 |
C10 |
180.0 |
180.0 |
H91 |
C9 |
C10 |
C11 |
179.9 |
179.9 |
H91 |
C9 |
C10 |
H101 |
359.9 |
359.9 |
C10 |
C11 |
C2 |
H21 |
132.3 |
330.0 |
C10 |
C11 |
C2 |
H22 |
22.9 |
210.0 |
C2 |
C11 |
C10 |
C12 |
180.0 |
179.7 |
C11 |
C10 |
C9 |
H91 |
179.9 |
179.9 |
C9 |
C10 |
C11 |
H101 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
C13 |
359.9 |
359.4 |
C10 |
C11 |
C12 |
H121 |
179.9 |
180.0 |
H101 |
C10 |
C9 |
H91 |
359.9 |
359.9 |
C9 |
C10 |
H101 |
C11 |
180.0 |
180.0 |
H101 |
C10 |
C11 |
C12 |
180.1 |
180.3 |
C12 |
C11 |
C2 |
H21 |
312.3 |
149.7 |
C12 |
C11 |
C2 |
H22 |
202.9 |
29.7 |
C2 |
C11 |
C12 |
C10 |
180.0 |
180.3 |
C8 |
C13 |
C12 |
C11 |
0.0 |
0.5 |
C12 |
C11 |
C10 |
H101 |
180.1 |
180.3 |
C13 |
C12 |
C11 |
H121 |
180.0 |
179.5 |
C11 |
C12 |
C13 |
H131 |
180.1 |
180.3 |
C8 |
C13 |
C12 |
H131 |
179.9 |
180.2 |
C11 |
C12 |
C13 |
H121 |
180.0 |
180.5 |
C11 |
C12 |
H121 |
C13 |
180.0 |
179.5 |
H121 |
C12 |
C13 |
H131 |
0.1 |
359.8 |
C8 |
C13 |
H131 |
C12 |
180.1 |
179.8 |
H131 |
C13 |
C12 |
H121 |
0.1 |
359.8 |
HO1 |
O1 |
C1 |
O2 |
358.9 |
0.1 |