Atom Nomenclature for I7T

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for I7T

Atom Name (V3) Atom Name (V2)
O12 O12
C12 C12
C1B C1B
C11 C11
O11 O11
C1A C1A
C10 C10
O10 O10
C9 C9
C8 C8
C7 C7
C61 C61
C6 C6
C5 C5
C1C C1C
C1 C1
O1 O1
O1C O1C
C41 C41
C4 C4
N4 N4
C42 C42
C43 C43
C3 C3
O3 O3
C2 C2
C21 C21
C5A C5A
O21 O21
I7 I7
N21 N21
H12 H12
H5A H5A
H10 H10
H9 H9
H8 H8
H61C H61C
H62C H62C
H51C H51C
H52C H52C
H41 H41
H1C H1C
H4 H4
H431 H431
H432 H432
H433 H433
H421 H421
H422 H422
H423 H423
H3 H3
H211 H211
H212 H212