Atom Nomenclature for I6P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for I6P

Atom Name (V3) Atom Name (V2)
O44 O44
P4 P4
O24 O24
O34 O34
O14 O14
C4 C4
C3 C3
O13 O13
P3 P3
O43 O43
O33 O33
O23 O23
C5 C5
O15 O15
P5 P5
O45 O45
O35 O35
O25 O25
C6 C6
O16 O16
P6 P6
O46 O46
O36 O36
O26 O26
C1 C1
O11 O11
P1 P1
O41 O41
O31 O31
O21 O21
C2 C2
O12 O12
P2 P2
O22 O22
O32 O32
O42 O42
H24 H24
H34 H34
H4 H4
H3 H3
H5 H5
H2 H2
H43 H43
H23 H23
H6 H6
H45 H45
H25 H25
H1 H1
H46 H46
H36 H36
H41 H41
H21 H21
H32 H32
H42 H42