PDB Chemical Component I5S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for I5S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CL1 C2 1.709 1.736
C2 C3 1.387 1.383
C2 C30 1.395 1.384
C3 C4 1.382 1.382
C3 H3 1.103 1.081
C4 C5 1.394 1.383
C4 H4 1.103 1.079
C5 C6 1.500 1.506
C5 C29 1.387 1.383
C6 O7 1.439 1.429
C6 H6C1 1.115 1.091
C6 H6C2 1.115 1.090
O7 C8 1.399 1.429
C8 C9 1.529 1.529
C8 H8C1 1.114 1.090
C8 H8C2 1.115 1.090
C9 N10 1.479 1.470
C9 H9C1 1.115 1.090
C9 H9C2 1.115 1.090
N10 C13 1.452 1.469
N10 H10 1.020 1.009
C13 C14 1.542 1.530
C13 H131 1.115 1.090
C13 H132 1.115 1.091
C14 N15 1.468 1.465
C14 H141 1.115 1.090
C14 H142 1.115 1.090
N15 S16 1.634 1.656
N15 H15 1.020 0.970
S16 O17 1.394 1.422
S16 O18 1.417 1.421
S16 C19 1.759 1.761
C19 C20 1.375 1.362
C19 C28 1.427 1.402
C20 C21 1.413 1.393
C20 H20 1.103 1.081
C21 C22 1.363 1.361
C21 H21 1.104 1.080
C22 C23 1.409 1.403
C22 H22 1.103 1.080
C23 C24 1.420 1.404
C23 C28 1.429 1.420
C24 N25 1.314 1.313
C24 H24 1.103 1.080
N25 C26 1.342 1.326
C26 C27 1.393 1.362
C26 H26 1.103 1.080
C27 C28 1.413 1.407
C27 H27 1.103 1.079
C29 C30 1.379 1.382
C29 H29 1.103 1.080
C30 H30 1.103 1.080

Bond Angles for I5S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CL1 C2 C3 120.7 120.0
CL1 C2 C30 117.9 120.0
C3 C2 C30 121.4 120.0
C2 C3 C4 119.3 120.0
C2 C3 H3 120.4 120.0
C2 C30 C29 119.3 120.0
C2 C30 H30 120.3 120.0
C4 C3 H3 120.3 120.0
C3 C4 C5 119.2 120.0
C3 C4 H4 120.4 120.0
C5 C4 H4 120.4 120.0
C4 C5 C6 118.4 120.0
C4 C5 C29 121.4 120.0
C6 C5 C29 120.1 120.0
C5 C6 O7 100.0 109.5
C5 C6 H6C1 115.8 109.4
C5 C6 H6C2 115.8 109.5
C5 C29 C30 119.3 120.0
C5 C29 H29 120.3 120.0
O7 C6 H6C1 115.8 109.5
O7 C6 H6C2 115.8 109.5
C6 O7 C8 111.2 106.8
H6C1 C6 H6C2 94.6 109.4
O7 C8 C9 113.5 109.5
O7 C8 H8C1 110.7 109.4
O7 C8 H8C2 110.7 109.5
C9 C8 H8C1 110.7 109.5
C9 C8 H8C2 110.7 109.5
C8 C9 N10 114.8 109.5
C8 C9 H9C1 110.3 109.5
C8 C9 H9C2 110.3 109.5
H8C1 C8 H8C2 99.6 109.5
N10 C9 H9C1 110.3 109.5
N10 C9 H9C2 110.3 109.4
C9 N10 C13 112.3 106.7
C9 N10 H10 111.1 106.7
H9C1 C9 H9C2 100.0 109.4
C13 N10 H10 111.2 106.7
N10 C13 C14 109.8 109.5
N10 C13 H131 112.1 109.5
N10 C13 H132 112.1 109.5
C14 C13 H131 112.1 109.5
C14 C13 H132 112.0 109.5
C13 C14 N15 105.4 109.4
C13 C14 H141 113.8 109.5
C13 C14 H142 113.7 109.4
H131 C13 H132 98.3 109.5
N15 C14 H141 113.7 109.5
N15 C14 H142 113.8 109.5
C14 N15 S16 119.0 120.0
C14 N15 H15 120.5 120.0
H141 C14 H142 96.7 109.5
S16 N15 H15 120.5 120.0
N15 S16 O17 99.4 105.7
N15 S16 O18 111.1 105.8
N15 S16 C19 104.1 107.4
O17 S16 O18 125.6 125.3
O17 S16 C19 113.3 105.8
O18 S16 C19 101.8 105.8
S16 C19 C20 118.3 120.3
S16 C19 C28 122.6 120.2
C20 C19 C28 119.0 119.4
C19 C20 C21 122.0 121.1
C19 C20 H20 119.0 119.4
C19 C28 C23 118.3 119.6
C19 C28 C27 125.3 122.2
C21 C20 H20 119.0 119.5
C20 C21 C22 120.2 121.0
C20 C21 H21 119.9 119.4
C22 C21 H21 119.9 119.5
C21 C22 C23 119.8 119.6
C21 C22 H22 120.2 120.2
C23 C22 H22 120.1 120.2
C22 C23 C24 120.0 122.1
C22 C23 C28 120.7 119.3
C24 C23 C28 119.3 118.6
C23 C24 N25 121.5 119.9
C23 C24 H24 119.3 120.1
C23 C28 C27 116.4 118.2
N25 C24 H24 119.2 120.0
C24 N25 C26 121.0 122.8
N25 C26 C27 121.8 121.9
N25 C26 H26 119.1 119.1
C27 C26 H26 119.1 119.0
C26 C27 C28 120.1 118.6
C26 C27 H27 119.9 120.7
C28 C27 H27 120.0 120.6
C30 C29 H29 120.4 120.0
C29 C30 H30 120.3 120.1

Torsion Angles for I5S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C2 CL1 C30 178.8 180.3
CL1 C2 C3 C4 180.6 180.0
CL1 C2 C3 H3 0.6 360.0
CL1 C2 C30 C29 179.3 179.7
CL1 C2 C30 H30 359.2 0.3
CL1 C2 C3 C30 181.3 179.7
C3 C2 C30 C29 0.5 359.4
C3 C2 C30 H30 180.5 180.0
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 1.8 0.0
C2 C3 C4 H4 181.8 180.0
CL1 C2 C30 C3 178.7 180.3
C30 C2 C3 C4 359.3 0.3
C30 C2 C3 H3 179.3 180.3
C5 C29 C30 C2 358.6 0.6
C2 C30 C29 H29 178.6 180.3
C29 C30 C2 H30 180.0 179.4
C4 C3 C2 C30 359.3 0.3
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 C6 181.9 180.0
C3 C4 C5 C29 357.3 359.9
H3 C3 C2 C30 179.3 180.3
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 181.8 180.0
H3 C3 C4 H4 1.8 0.0
C5 C4 C3 H3 181.8 180.0
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 C29 184.6 180.1
C4 C5 C6 O7 75.1 90.0
C4 C5 C6 H6C1 309.9 210.0
C4 C5 C6 H6C2 200.4 329.9
C4 C5 C29 C30 2.5 359.8
C4 C5 C29 H29 182.5 180.0
H4 C4 C3 H3 1.8 0.0
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 1.9 0.0
H4 C4 C5 C29 177.3 180.0
C6 C5 C4 H4 1.9 0.0
C4 C5 C6 C29 175.5 179.9
C6 C5 C29 C30 177.8 179.7
C6 C5 C29 H29 357.8 360.0
O7 C6 C5 H6C1 125.2 240.0
O7 C6 C5 H6C2 234.7 120.1
C5 C6 O7 C8 147.1 180.0
H6C1 C6 C5 H6C2 109.5 240.1
C2 C30 C29 C5 358.6 0.6
C29 C5 C4 H4 177.3 180.0
C4 C5 C29 C6 184.7 180.1
C29 C5 C6 O7 259.7 270.1
C29 C5 C6 H6C1 134.4 30.1
C29 C5 C6 H6C2 24.9 150.0
C30 C29 C5 H29 180.0 179.7
C5 C29 C30 H30 178.6 180.0
O7 C6 C5 C29 259.7 270.1
C5 C6 O7 H6C1 234.7 120.0
C5 C6 O7 H6C2 125.3 239.9
H6C1 C6 O7 H6C2 250.5 119.9
C6 O7 C8 C9 174.2 180.0
C6 O7 C8 H8C1 48.9 300.0
C6 O7 C8 H8C2 299.5 60.0
H6C1 C6 C5 C29 134.4 30.1
C5 C6 H6C1 O7 116.7 240.0
C5 C6 H6C1 H6C2 238.3 120.0
O7 C6 H6C1 H6C2 121.6 240.0
H6C1 C6 O7 C8 272.4 60.0
H6C2 C6 C5 C29 24.9 150.0
C5 C6 H6C2 O7 243.3 120.1
C5 C6 H6C2 H6C1 121.7 240.0
O7 C6 H6C2 H6C1 238.4 120.0
H6C2 C6 O7 C8 21.8 300.1
C8 O7 C6 H6C1 272.4 60.0
C8 O7 C6 H6C2 21.8 300.1
C9 C8 O7 H8C1 125.3 240.0
C9 C8 O7 H8C2 234.7 120.0
O7 C8 C9 N10 7.6 65.0
O7 C8 C9 H9C1 242.4 185.0
O7 C8 C9 H9C2 132.9 305.0
H8C1 C8 O7 H8C2 109.5 240.0
O7 C8 C9 H8C1 234.7 120.0
O7 C8 C9 H8C2 125.3 240.0
H8C1 C8 C9 H8C2 250.5 120.0
N10 C9 C8 H9C1 125.3 239.9
N10 C9 C8 H9C2 234.8 120.0
C8 C9 N10 C13 281.4 180.0
C8 C9 N10 H10 156.1 293.8
H9C1 C9 C8 H9C2 109.5 240.0
O7 C8 H8C1 C9 126.8 240.0
O7 C8 H8C1 H8C2 243.4 120.0
C9 C8 H8C1 H8C2 116.6 240.0
H8C1 C8 C9 N10 132.9 305.0
H8C1 C8 C9 H9C1 7.6 65.1
H8C1 C8 C9 H9C2 258.1 185.0
O7 C8 H8C2 C9 233.2 120.0
O7 C8 H8C2 H8C1 116.6 240.0
C9 C8 H8C2 H8C1 243.4 120.0
H8C2 C8 C9 N10 242.4 185.0
H8C2 C8 C9 H9C1 117.1 305.1
H8C2 C8 C9 H9C2 7.6 65.0
N10 C9 C8 H8C1 132.9 305.0
N10 C9 C8 H8C2 242.4 185.0
C8 C9 N10 H9C1 234.7 120.1
C8 C9 N10 H9C2 125.2 240.0
H9C1 C9 N10 H9C2 250.5 120.0
C13 N10 C9 H10 125.3 246.2
C9 N10 C13 C14 202.9 180.0
C9 N10 C13 H131 77.6 300.0
C9 N10 C13 H132 328.1 60.0
H9C1 C9 C8 H8C1 7.6 65.1
H9C1 C9 C8 H8C2 117.1 305.1
C8 C9 H9C1 N10 127.8 239.9
C8 C9 H9C1 H9C2 243.9 120.0
N10 C9 H9C1 H9C2 116.1 240.0
H9C1 C9 N10 C13 46.7 59.9
H9C1 C9 N10 H10 281.4 173.7
H9C2 C9 C8 H8C1 258.1 185.0
H9C2 C9 C8 H8C2 7.6 65.0
C8 C9 H9C2 N10 232.2 120.0
C8 C9 H9C2 H9C1 116.1 240.0
N10 C9 H9C2 H9C1 243.9 120.0
H9C2 C9 N10 C13 156.2 300.0
H9C2 C9 N10 H10 30.9 53.8
C13 N10 C9 H9C1 46.7 59.9
C13 N10 C9 H9C2 156.2 300.0
C9 N10 C13 H10 234.8 113.8
C14 C13 N10 H131 125.3 240.0
C14 C13 N10 H132 234.8 120.0
N10 C13 C14 N15 191.7 180.0
N10 C13 C14 H141 66.4 300.0
N10 C13 C14 H142 316.9 60.0
H131 C13 N10 H132 109.5 240.0
H10 N10 C9 H9C1 281.4 173.7
H10 N10 C9 H9C2 30.9 53.8
C9 N10 H10 C13 125.9 246.2
H10 N10 C13 C14 328.1 66.2
H10 N10 C13 H131 202.8 186.2
H10 N10 C13 H132 93.3 306.2
C14 C13 N10 H10 328.1 66.2
N10 C13 C14 H131 234.7 120.0
N10 C13 C14 H132 125.3 240.0
H131 C13 C14 H132 250.5 120.0
N15 C14 C13 H141 125.3 240.0
N15 C14 C13 H142 234.7 120.0
C13 C14 N15 S16 92.7 164.5
C13 C14 N15 H15 272.7 344.5
H141 C14 C13 H142 109.5 240.0
H131 C13 N10 H10 202.8 186.2
N10 C13 H131 C14 124.0 240.0
N10 C13 H131 H132 242.0 120.0
C14 C13 H131 H132 118.0 240.0
H131 C13 C14 N15 316.9 60.0
H131 C13 C14 H141 191.7 180.0
H131 C13 C14 H142 82.2 300.0
H132 C13 N10 H10 93.3 306.2
N10 C13 H132 C14 236.0 120.0
N10 C13 H132 H131 118.0 240.0
C14 C13 H132 H131 242.0 120.0
H132 C13 C14 N15 66.4 300.0
H132 C13 C14 H141 301.1 60.0
H132 C13 C14 H142 191.7 180.0
N15 C14 C13 H131 316.9 60.0
N15 C14 C13 H132 66.4 300.0
C13 C14 N15 H141 234.7 120.0
C13 C14 N15 H142 125.3 240.1
H141 C14 N15 H142 250.5 120.1
S16 N15 C14 H15 180.0 180.0
C14 N15 S16 O17 194.9 312.2
C14 N15 S16 O18 328.9 177.4
C14 N15 S16 C19 77.8 64.8
H141 C14 C13 H131 191.7 180.0
H141 C14 C13 H132 301.1 60.0
C13 C14 H141 N15 120.7 240.0
C13 C14 H141 H142 240.3 120.0
N15 C14 H141 H142 119.7 239.9
H141 C14 N15 S16 218.0 44.5
H141 C14 N15 H15 38.0 224.5
H142 C14 C13 H131 82.2 300.0
H142 C14 C13 H132 191.7 180.0
C13 C14 H142 N15 239.3 120.0
C13 C14 H142 H141 119.7 240.0
N15 C14 H142 H141 240.3 120.1
H142 C14 N15 S16 327.5 284.4
H142 C14 N15 H15 147.5 104.4
S16 N15 C14 H141 218.0 44.5
S16 N15 C14 H142 327.5 284.4
C14 N15 S16 H15 180.0 180.0
O17 S16 N15 O18 225.9 134.7
O17 S16 N15 C19 117.0 247.4
O18 S16 N15 C19 251.1 112.7
N15 S16 C19 C20 261.4 244.0
N15 S16 C19 C28 84.1 63.7
H15 N15 C14 H141 38.0 224.5
H15 N15 C14 H142 147.5 104.4
C14 N15 H15 S16 180.0 180.0
H15 N15 S16 O17 14.9 132.2
H15 N15 S16 O18 149.0 357.4
H15 N15 S16 C19 257.8 244.8
O17 S16 N15 H15 14.9 132.2
N15 S16 O17 O18 124.5 236.9
N15 S16 O17 C19 250.1 113.8
O18 S16 O17 C19 125.6 236.9
O17 S16 C19 C20 154.5 356.6
O17 S16 C19 C28 337.2 176.3
O18 S16 N15 H15 149.0 357.4
N15 S16 O18 O17 240.6 123.1
N15 S16 O18 C19 110.3 246.2
O17 S16 O18 C19 229.8 123.1
O18 S16 C19 C20 17.0 131.3
O18 S16 C19 C28 199.7 311.0
C19 S16 N15 H15 257.8 244.8
N15 S16 C19 O17 106.9 247.4
N15 S16 C19 O18 244.4 112.7
O17 S16 C19 O18 137.5 225.2
C20 C19 S16 C28 177.3 180.3
S16 C19 C20 C21 178.1 180.0
S16 C19 C20 H20 358.1 359.9
S16 C19 C28 C23 181.1 179.8
S16 C19 C28 C27 358.4 0.6
S16 C19 C20 C28 182.6 179.7
C20 C19 C28 C23 3.8 359.5
C20 C19 C28 C27 181.2 180.2
C21 C20 C19 H20 180.0 180.0
C19 C20 C21 C22 3.0 360.0
C19 C20 C21 H21 183.0 179.9
S16 C19 C28 C20 177.3 180.3
C28 C19 C20 C21 355.5 0.3
C28 C19 C20 H20 175.5 180.3
C22 C23 C28 C19 358.2 0.5
C24 C23 C28 C19 177.8 180.3
C23 C28 C19 C27 182.7 179.2
C26 C27 C28 C19 182.7 179.7
C19 C28 C27 H27 2.7 359.5
C21 C20 C19 C28 355.5 0.3
C19 C20 C21 H20 180.0 180.0
C22 C21 C20 H21 180.0 180.0
C20 C21 C22 C23 359.2 0.0
C20 C21 C22 H22 179.1 180.0
H20 C20 C19 C28 175.5 180.3
C19 C20 H20 C21 180.0 180.0
H20 C20 C21 C22 183.1 180.0
H20 C20 C21 H21 3.1 360.0
C22 C21 C20 H20 183.1 180.0
C20 C21 C22 H21 180.0 180.0
C23 C22 C21 H22 180.0 180.0
C21 C22 C23 C24 180.7 180.0
C21 C22 C23 C28 0.3 359.8
H21 C21 C20 H20 3.1 360.0
C20 C21 H21 C22 180.0 180.0
H21 C21 C22 C23 179.2 180.0
H21 C21 C22 H22 359.1 360.0
C19 C28 C23 C22 358.2 0.5
C23 C22 C21 H21 179.2 180.0
C21 C22 C23 H22 180.0 180.0
C24 C23 C22 C28 180.3 180.2
C22 C23 C24 N25 178.9 180.0
C22 C23 C24 H24 358.9 360.0
C22 C23 C28 C27 180.6 179.7
H22 C22 C21 H21 359.1 360.0
C21 C22 H22 C23 180.0 180.0
H22 C22 C23 C24 0.7 0.0
H22 C22 C23 C28 180.3 179.8
C19 C28 C23 C24 177.8 180.3
C24 C23 C22 H22 0.7 0.0
C22 C23 C24 C28 179.7 179.8
C24 C23 C28 C27 0.3 359.6
N25 C24 C23 H24 180.0 180.1
C23 C24 N25 C26 1.0 359.9
C19 C28 C23 C27 177.6 180.7
C28 C23 C22 H22 180.3 179.8
C22 C23 C28 C24 180.3 180.2
C28 C23 C24 N25 359.2 0.2
C28 C23 C24 H24 179.2 180.1
C26 C27 C28 C23 0.0 0.5
C23 C28 C27 H27 180.0 180.2
N25 C24 C23 C28 359.2 0.2
C23 C24 N25 H24 180.0 179.9
C24 N25 C26 C27 359.4 0.1
C24 N25 C26 H26 179.4 180.0
H24 C24 C23 C28 179.2 180.1
C23 C24 H24 N25 180.0 180.1
H24 C24 N25 C26 181.0 180.0
C26 N25 C24 H24 181.0 180.0
C27 C26 N25 H26 180.0 180.1
N25 C26 C27 C28 0.1 359.7
N25 C26 C27 H27 180.1 180.0
C19 C28 C27 C26 182.7 179.7
C23 C28 C27 C26 0.0 0.5
N25 C26 C27 H26 180.0 179.9
C28 C27 C26 H27 180.0 179.7
N25 C26 H26 C27 180.0 180.1
H26 C26 C27 C28 180.1 179.8
H26 C26 C27 H27 0.1 0.0
C19 C28 C27 C23 182.6 179.3
C28 C27 C26 H26 180.1 179.8
C26 C27 C28 H27 180.0 180.3
H27 C27 C26 H26 0.1 0.0
C26 C27 H27 C28 180.0 179.7
C2 C30 C29 H30 180.0 180.6
C5 C29 C30 H29 180.0 180.3
C5 C29 H29 C30 180.0 179.7
H29 C29 C30 H30 358.6 359.7
C2 C30 H30 C29 180.0 179.4
H30 C30 C29 H29 358.6 359.7