PDB Chemical Component I59
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for I59
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.421 |
1.361 |
C1 |
C6 |
1.414 |
1.394 |
C1 |
H1 |
1.103 |
1.080 |
C2 |
C3 |
1.411 |
1.405 |
C2 |
H2 |
1.102 |
1.080 |
C3 |
C4 |
1.475 |
1.417 |
C3 |
C7 |
1.410 |
1.405 |
C4 |
C5 |
1.432 |
1.406 |
C4 |
C10 |
1.435 |
1.404 |
C5 |
C6 |
1.417 |
1.361 |
C5 |
H5 |
1.104 |
1.079 |
C6 |
H6 |
1.103 |
1.080 |
C7 |
C8 |
1.401 |
1.361 |
C7 |
H7 |
1.102 |
1.080 |
C8 |
C9 |
1.429 |
1.393 |
C8 |
H8 |
1.103 |
1.080 |
C9 |
C10 |
1.412 |
1.361 |
C9 |
H9 |
1.103 |
1.079 |
C10 |
C11 |
1.498 |
1.506 |
C11 |
O12 |
1.438 |
1.429 |
C11 |
P13 |
1.828 |
1.822 |
C11 |
H11 |
1.115 |
1.089 |
O12 |
H12 |
0.951 |
0.966 |
P13 |
O15 |
1.560 |
1.481 |
P13 |
O16 |
1.448 |
1.609 |
P13 |
O17 |
1.520 |
1.609 |
O16 |
H16 |
0.950 |
0.967 |
O17 |
H17 |
0.950 |
0.967 |
Bond Angles for I59
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
121.7 |
120.9 |
C2 |
C1 |
H1 |
119.5 |
119.5 |
C1 |
C2 |
C3 |
118.8 |
119.7 |
C1 |
C2 |
H2 |
121.0 |
120.1 |
C6 |
C1 |
H1 |
118.9 |
119.5 |
C1 |
C6 |
C5 |
120.7 |
121.0 |
C1 |
C6 |
H6 |
119.6 |
119.5 |
C3 |
C2 |
H2 |
120.2 |
120.2 |
C2 |
C3 |
C4 |
120.4 |
119.4 |
C2 |
C3 |
C7 |
119.3 |
121.3 |
C4 |
C3 |
C7 |
120.4 |
119.3 |
C3 |
C4 |
C5 |
119.1 |
119.3 |
C3 |
C4 |
C10 |
120.3 |
119.4 |
C3 |
C7 |
C8 |
119.0 |
119.7 |
C3 |
C7 |
H7 |
120.9 |
120.1 |
C5 |
C4 |
C10 |
120.7 |
121.2 |
C4 |
C5 |
C6 |
119.4 |
119.6 |
C4 |
C5 |
H5 |
120.8 |
120.2 |
C4 |
C10 |
C9 |
116.8 |
119.6 |
C4 |
C10 |
C11 |
120.7 |
120.2 |
C6 |
C5 |
H5 |
119.8 |
120.2 |
C5 |
C6 |
H6 |
119.7 |
119.5 |
C8 |
C7 |
H7 |
120.2 |
120.2 |
C7 |
C8 |
C9 |
120.7 |
121.0 |
C7 |
C8 |
H8 |
118.7 |
119.5 |
C9 |
C8 |
H8 |
120.6 |
119.5 |
C8 |
C9 |
C10 |
122.9 |
121.0 |
C8 |
C9 |
H9 |
119.2 |
119.5 |
C10 |
C9 |
H9 |
117.9 |
119.5 |
C9 |
C10 |
C11 |
122.5 |
120.2 |
C10 |
C11 |
O12 |
113.4 |
109.4 |
C10 |
C11 |
P13 |
114.0 |
109.5 |
C10 |
C11 |
H11 |
104.8 |
109.5 |
O12 |
C11 |
P13 |
113.7 |
109.4 |
O12 |
C11 |
H11 |
105.2 |
109.4 |
C11 |
O12 |
H12 |
113.5 |
106.8 |
P13 |
C11 |
H11 |
104.5 |
109.6 |
C11 |
P13 |
O15 |
102.8 |
109.4 |
C11 |
P13 |
O16 |
115.1 |
109.5 |
C11 |
P13 |
O17 |
108.8 |
109.6 |
O15 |
P13 |
O16 |
113.5 |
109.4 |
O15 |
P13 |
O17 |
104.3 |
109.5 |
O16 |
P13 |
O17 |
111.4 |
109.4 |
P13 |
O16 |
H16 |
115.2 |
106.9 |
P13 |
O17 |
H17 |
108.8 |
106.8 |
Torsion Angles for I59
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
C2 |
C1 |
C6 |
C5 |
359.6 |
360.0 |
C2 |
C1 |
C6 |
H6 |
179.6 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
0.4 |
0.2 |
C1 |
C2 |
C3 |
C7 |
178.8 |
180.0 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
C6 |
C1 |
C2 |
C3 |
0.3 |
0.0 |
C6 |
C1 |
C2 |
H2 |
180.3 |
180.0 |
C4 |
C5 |
C6 |
C1 |
359.8 |
359.8 |
C1 |
C6 |
C5 |
H5 |
179.8 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
H1 |
C6 |
180.0 |
180.0 |
H1 |
C1 |
C2 |
C3 |
180.4 |
180.0 |
H1 |
C1 |
C2 |
H2 |
0.4 |
0.0 |
H1 |
C1 |
C6 |
C5 |
179.5 |
180.0 |
H1 |
C1 |
C6 |
H6 |
359.5 |
0.0 |
C3 |
C2 |
C1 |
C6 |
0.3 |
0.0 |
C3 |
C2 |
C1 |
H1 |
180.4 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
C7 |
181.5 |
180.2 |
C2 |
C3 |
C4 |
C5 |
359.1 |
359.5 |
C2 |
C3 |
C4 |
C10 |
177.3 |
180.3 |
C2 |
C3 |
C7 |
C8 |
182.6 |
180.0 |
C2 |
C3 |
C7 |
H7 |
2.6 |
0.0 |
H2 |
C2 |
C1 |
C6 |
180.3 |
180.0 |
H2 |
C2 |
C1 |
H1 |
0.4 |
0.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
180.4 |
180.2 |
H2 |
C2 |
C3 |
C7 |
358.8 |
0.0 |
C4 |
C3 |
C2 |
H2 |
180.4 |
180.2 |
C2 |
C3 |
C4 |
C7 |
178.4 |
179.8 |
C4 |
C3 |
C7 |
C8 |
1.1 |
359.8 |
C4 |
C3 |
C7 |
H7 |
181.0 |
179.8 |
C5 |
C4 |
C3 |
C10 |
181.8 |
179.3 |
C3 |
C4 |
C5 |
C6 |
0.8 |
0.5 |
C3 |
C4 |
C5 |
H5 |
180.8 |
180.3 |
C3 |
C4 |
C10 |
C9 |
0.3 |
359.6 |
C3 |
C4 |
C10 |
C11 |
180.7 |
179.8 |
C7 |
C3 |
C2 |
H2 |
358.8 |
0.0 |
C2 |
C3 |
C7 |
C4 |
181.5 |
180.2 |
C7 |
C3 |
C4 |
C5 |
180.6 |
179.7 |
C7 |
C3 |
C4 |
C10 |
358.9 |
0.5 |
C8 |
C7 |
C3 |
H7 |
180.0 |
180.0 |
C3 |
C7 |
C8 |
C9 |
359.8 |
359.9 |
C3 |
C7 |
C8 |
H8 |
179.7 |
180.0 |
C1 |
C6 |
C5 |
C4 |
359.8 |
359.8 |
C5 |
C4 |
C3 |
C7 |
180.6 |
179.7 |
C3 |
C4 |
C5 |
C10 |
178.2 |
180.7 |
C5 |
C4 |
C10 |
C9 |
178.5 |
180.3 |
C5 |
C4 |
C10 |
C11 |
358.9 |
0.5 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.2 |
C4 |
C5 |
C6 |
H6 |
179.8 |
179.8 |
C10 |
C4 |
C3 |
C7 |
358.9 |
0.5 |
C3 |
C4 |
C10 |
C5 |
181.8 |
179.3 |
C10 |
C4 |
C5 |
C6 |
182.6 |
179.7 |
C10 |
C4 |
C5 |
H5 |
2.6 |
359.5 |
C8 |
C9 |
C10 |
C4 |
0.6 |
0.2 |
C4 |
C10 |
C9 |
H9 |
180.7 |
180.3 |
C9 |
C10 |
C4 |
C11 |
179.6 |
179.8 |
C4 |
C10 |
C11 |
O12 |
97.9 |
161.6 |
C4 |
C10 |
C11 |
P13 |
230.0 |
281.5 |
C4 |
C10 |
C11 |
H11 |
343.7 |
41.7 |
C5 |
C6 |
C1 |
H1 |
179.5 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C10 |
182.6 |
179.7 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.8 |
H5 |
C5 |
C4 |
C10 |
2.6 |
359.5 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.2 |
H5 |
C5 |
C6 |
H6 |
359.8 |
359.9 |
H6 |
C6 |
C1 |
H1 |
359.5 |
0.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
359.8 |
359.9 |
C3 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
C9 |
C8 |
C7 |
H8 |
180.0 |
179.9 |
C7 |
C8 |
C9 |
C10 |
359.3 |
0.1 |
C7 |
C8 |
C9 |
H9 |
179.3 |
180.0 |
C3 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
H7 |
C7 |
C8 |
C9 |
179.8 |
179.9 |
H7 |
C7 |
C8 |
H8 |
359.8 |
360.0 |
C4 |
C10 |
C9 |
C8 |
0.6 |
0.2 |
C9 |
C8 |
C7 |
H7 |
179.8 |
179.9 |
C7 |
C8 |
C9 |
H8 |
180.0 |
180.1 |
C10 |
C9 |
C8 |
H9 |
180.1 |
180.1 |
C8 |
C9 |
C10 |
C11 |
180.2 |
179.9 |
H8 |
C8 |
C7 |
H7 |
359.8 |
360.0 |
C7 |
C8 |
H8 |
C9 |
180.0 |
179.9 |
H8 |
C8 |
C9 |
C10 |
179.4 |
180.0 |
H8 |
C8 |
C9 |
H9 |
359.3 |
359.9 |
C4 |
C10 |
C9 |
C11 |
180.4 |
180.2 |
C10 |
C9 |
C8 |
H8 |
179.4 |
180.0 |
C8 |
C9 |
C10 |
H9 |
179.9 |
179.9 |
C9 |
C10 |
C11 |
O12 |
278.3 |
341.9 |
C9 |
C10 |
C11 |
P13 |
50.4 |
101.8 |
C9 |
C10 |
C11 |
H11 |
164.1 |
221.9 |
H9 |
C9 |
C8 |
H8 |
359.3 |
359.9 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.1 |
H9 |
C9 |
C10 |
C11 |
0.3 |
0.0 |
C4 |
C10 |
C11 |
C9 |
179.6 |
179.8 |
C11 |
C10 |
C9 |
H9 |
0.3 |
0.0 |
O12 |
C11 |
C10 |
P13 |
227.8 |
240.1 |
O12 |
C11 |
C10 |
H11 |
114.2 |
119.9 |
C10 |
C11 |
O12 |
H12 |
180.0 |
60.0 |
P13 |
C11 |
C10 |
H11 |
246.4 |
239.8 |
C10 |
C11 |
P13 |
O15 |
72.9 |
44.6 |
C10 |
C11 |
P13 |
O16 |
308.9 |
164.6 |
C10 |
C11 |
P13 |
O17 |
183.1 |
284.6 |
C10 |
C11 |
O12 |
P13 |
132.4 |
120.0 |
C10 |
C11 |
O12 |
H11 |
246.0 |
240.0 |
P13 |
C11 |
O12 |
H11 |
113.7 |
120.1 |
O12 |
C11 |
P13 |
O15 |
204.9 |
164.6 |
O12 |
C11 |
P13 |
O16 |
80.9 |
284.5 |
O12 |
C11 |
P13 |
O17 |
315.2 |
44.6 |
C10 |
C11 |
P13 |
O12 |
227.9 |
240.1 |
C10 |
C11 |
P13 |
H11 |
113.8 |
120.1 |
O12 |
C11 |
P13 |
H11 |
245.9 |
240.0 |
P13 |
C11 |
O12 |
H12 |
47.6 |
300.0 |
O15 |
P13 |
C11 |
O16 |
124.0 |
240.0 |
O15 |
P13 |
C11 |
O17 |
249.8 |
120.0 |
O16 |
P13 |
C11 |
O17 |
125.8 |
240.0 |
C11 |
P13 |
O16 |
H16 |
180.0 |
180.1 |
C11 |
P13 |
O17 |
H17 |
180.0 |
300.0 |
C10 |
C11 |
H11 |
O12 |
119.8 |
119.9 |
C10 |
C11 |
H11 |
P13 |
239.8 |
239.9 |
O12 |
C11 |
H11 |
P13 |
120.0 |
120.0 |
H11 |
C11 |
O12 |
H12 |
293.9 |
180.0 |
H11 |
C11 |
P13 |
O15 |
319.0 |
284.5 |
H11 |
C11 |
P13 |
O16 |
195.0 |
44.5 |
H11 |
C11 |
P13 |
O17 |
69.3 |
164.5 |
H12 |
O12 |
C11 |
P13 |
47.6 |
300.0 |
H12 |
O12 |
C11 |
H11 |
293.9 |
180.0 |
O15 |
P13 |
C11 |
H11 |
319.0 |
284.5 |
C11 |
P13 |
O15 |
O16 |
234.9 |
120.0 |
C11 |
P13 |
O15 |
O17 |
113.5 |
239.9 |
O16 |
P13 |
O15 |
O17 |
238.6 |
119.9 |
O15 |
P13 |
O16 |
H16 |
61.9 |
300.0 |
O15 |
P13 |
O17 |
H17 |
289.2 |
180.0 |
O16 |
P13 |
C11 |
H11 |
195.0 |
44.5 |
C11 |
P13 |
O16 |
O15 |
118.2 |
240.1 |
C11 |
P13 |
O16 |
O17 |
235.6 |
120.1 |
O15 |
P13 |
O16 |
O17 |
117.4 |
240.1 |
O16 |
P13 |
O17 |
H17 |
52.0 |
60.1 |
O17 |
P13 |
C11 |
H11 |
69.3 |
164.5 |
C11 |
P13 |
O17 |
O15 |
250.8 |
120.0 |
C11 |
P13 |
O17 |
O16 |
127.9 |
239.9 |
O15 |
P13 |
O17 |
O16 |
237.2 |
119.9 |
O17 |
P13 |
O16 |
H16 |
304.5 |
60.0 |
H16 |
O16 |
P13 |
O17 |
304.5 |
60.0 |