Atom Nomenclature for I52

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for I52

Atom Name (V3) Atom Name (V2)
C38 C38
C39 C39
C37 C37
C35 C35
C36 C36
C25 C25
C24 C24
N8 N8
C7 C7
C9 C9
C13 C13
O11 O11
C12 C12
C10 C10
C31 C31
C23 C23
O26 O26
C4 C4
C6 C6
S14 S14
N5 N5
C3 C3
O1 O1
N2 N2
O21 O21
O41 O41
C28 C28
N27 N27
C29 C29
C33 C33
C34 C34
C30 C30
C32 C32
C16 C16
C18 C18
C15 C15
O22 O22
C20 C20
C17 C17
C19 C19
H381 1H38
H382 2H38
H391 1H39
H392 2H39
H393 3H39
H371 1H37
H372 2H37
H351 1H35
H352 2H35
H361 1H36
H362 2H36
H251 1H25
H252 2H25
H253 3H25
H241 1H24
H242 2H24
H243 3H24
H71 1H7
H72 2H7
H91 1H9
H92 2H9
H131 1H13
H132 2H13
H121 1H12
H122 2H12
H101 1H10
H102 2H10
H31 H31
H23 H23
H4 H4
H61 1H6
H62 2H6
H1 H1
H2 H2
H27 H27
H33 H33
H34 H34
H30 H30
H16 H16
H20 H20
H17 H17
H19 H19