PDB Chemical Component I4B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for I4B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.373 |
1.381 |
| C1 |
C6 |
1.388 |
1.383 |
| C1 |
C1' |
1.496 |
1.506 |
| C2 |
C3 |
1.416 |
1.382 |
| C2 |
H2 |
1.102 |
1.080 |
| C3 |
C4 |
1.380 |
1.382 |
| C3 |
H3 |
1.102 |
1.080 |
| C4 |
C5 |
1.392 |
1.382 |
| C4 |
H4 |
1.104 |
1.080 |
| C5 |
C6 |
1.402 |
1.382 |
| C5 |
H5 |
1.104 |
1.080 |
| C6 |
H6 |
1.104 |
1.079 |
| C1' |
C2' |
1.515 |
1.529 |
| C1' |
H1'1 |
1.114 |
1.089 |
| C1' |
H1'2 |
1.115 |
1.090 |
| C2' |
C3' |
1.500 |
1.529 |
| C2' |
C4' |
1.506 |
1.530 |
| C2' |
H2' |
1.116 |
1.090 |
| C3' |
H3'1 |
1.115 |
1.089 |
| C3' |
H3'2 |
1.114 |
1.091 |
| C3' |
H3'3 |
1.115 |
1.089 |
| C4' |
H4'1 |
1.115 |
1.088 |
| C4' |
H4'2 |
1.115 |
1.090 |
| C4' |
H4'3 |
1.114 |
1.090 |
Bond Angles for I4B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
120.3 |
120.0 |
| C2 |
C1 |
C1' |
118.8 |
120.0 |
| C1 |
C2 |
C3 |
120.2 |
120.0 |
| C1 |
C2 |
H2 |
118.4 |
120.0 |
| C6 |
C1 |
C1' |
120.9 |
120.0 |
| C1 |
C6 |
C5 |
119.7 |
120.0 |
| C1 |
C6 |
H6 |
119.7 |
120.0 |
| C1 |
C1' |
C2' |
108.0 |
109.5 |
| C1 |
C1' |
H1'1 |
112.8 |
109.5 |
| C1 |
C1' |
H1'2 |
112.7 |
109.5 |
| C3 |
C2 |
H2 |
121.5 |
120.0 |
| C2 |
C3 |
C4 |
119.5 |
120.0 |
| C2 |
C3 |
H3 |
121.5 |
120.0 |
| C4 |
C3 |
H3 |
118.9 |
120.0 |
| C3 |
C4 |
C5 |
120.1 |
120.0 |
| C3 |
C4 |
H4 |
119.5 |
120.0 |
| C5 |
C4 |
H4 |
120.3 |
120.0 |
| C4 |
C5 |
C6 |
120.0 |
120.0 |
| C4 |
C5 |
H5 |
119.6 |
120.0 |
| C6 |
C5 |
H5 |
120.3 |
120.0 |
| C5 |
C6 |
H6 |
120.7 |
120.0 |
| C2' |
C1' |
H1'1 |
112.8 |
109.5 |
| C2' |
C1' |
H1'2 |
112.8 |
109.5 |
| C1' |
C2' |
C3' |
108.0 |
109.5 |
| C1' |
C2' |
C4' |
111.2 |
109.5 |
| C1' |
C2' |
H2' |
109.9 |
109.5 |
| H1'1 |
C1' |
H1'2 |
97.7 |
109.4 |
| C3' |
C2' |
C4' |
111.1 |
109.5 |
| C3' |
C2' |
H2' |
109.9 |
109.5 |
| C2' |
C3' |
H3'1 |
108.0 |
109.6 |
| C2' |
C3' |
H3'2 |
112.8 |
109.5 |
| C2' |
C3' |
H3'3 |
112.7 |
109.5 |
| C4' |
C2' |
H2' |
106.7 |
109.4 |
| C2' |
C4' |
H4'1 |
111.2 |
109.5 |
| C2' |
C4' |
H4'2 |
111.6 |
109.4 |
| C2' |
C4' |
H4'3 |
111.6 |
109.5 |
| H3'1 |
C3' |
H3'2 |
112.8 |
109.5 |
| H3'1 |
C3' |
H3'3 |
112.8 |
109.5 |
| H3'2 |
C3' |
H3'3 |
97.7 |
109.4 |
| H4'1 |
C4' |
H4'2 |
111.6 |
109.5 |
| H4'1 |
C4' |
H4'3 |
111.6 |
109.5 |
| H4'2 |
C4' |
H4'3 |
98.8 |
109.4 |
Torsion Angles for I4B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C1' |
181.0 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
2.2 |
359.5 |
| C2 |
C1 |
C6 |
H6 |
182.2 |
180.0 |
| C2 |
C1 |
C1' |
C2' |
262.2 |
90.0 |
| C2 |
C1 |
C1' |
H1'1 |
27.5 |
329.9 |
| C2 |
C1 |
C1' |
H1'2 |
137.0 |
210.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
357.6 |
359.9 |
| C1 |
C2 |
C3 |
H3 |
177.6 |
180.0 |
| C2 |
C1 |
C6 |
C1' |
178.9 |
179.7 |
| C6 |
C1 |
C2 |
C3 |
359.6 |
0.3 |
| C6 |
C1 |
C2 |
H2 |
179.6 |
180.3 |
| C6 |
C1 |
C1' |
C2' |
81.2 |
269.7 |
| C6 |
C1 |
C1' |
H1'1 |
206.4 |
149.6 |
| C6 |
C1 |
C1' |
H1'2 |
315.9 |
29.7 |
| C4 |
C5 |
C6 |
C1 |
358.9 |
0.5 |
| C1 |
C6 |
C5 |
H5 |
178.9 |
180.3 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.5 |
| C2 |
C1 |
C1' |
C6 |
181.0 |
180.3 |
| C1' |
C1 |
C2 |
C3 |
178.5 |
180.0 |
| C1' |
C1 |
C2 |
H2 |
358.5 |
0.0 |
| C1' |
C1 |
C6 |
C5 |
183.3 |
179.8 |
| C1' |
C1 |
C6 |
H6 |
3.3 |
0.3 |
| C2' |
C1' |
C1 |
H1'1 |
234.7 |
120.1 |
| C2' |
C1' |
C1 |
H1'2 |
125.2 |
240.0 |
| C1 |
C1' |
C2' |
C3' |
193.4 |
180.0 |
| C1 |
C1' |
C2' |
C4' |
71.2 |
300.0 |
| C1 |
C1' |
C2' |
H2' |
313.3 |
60.0 |
| H1'1 |
C1' |
C1 |
H1'2 |
250.5 |
119.9 |
| C3 |
C2 |
C1 |
C6 |
359.6 |
0.3 |
| C3 |
C2 |
C1 |
C1' |
178.5 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| C2 |
C3 |
C4 |
C5 |
3.5 |
0.1 |
| C2 |
C3 |
C4 |
H4 |
183.5 |
179.9 |
| H2 |
C2 |
C1 |
C6 |
179.6 |
180.3 |
| H2 |
C2 |
C1 |
C1' |
358.5 |
0.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
177.6 |
179.9 |
| H2 |
C2 |
C3 |
H3 |
357.6 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
177.6 |
179.9 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
358.2 |
359.7 |
| C3 |
C4 |
C5 |
H5 |
178.2 |
179.9 |
| H3 |
C3 |
C2 |
H2 |
357.6 |
360.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
| H3 |
C3 |
C4 |
C5 |
183.5 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
3.5 |
359.8 |
| C1 |
C6 |
C5 |
C4 |
358.9 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
183.5 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
H6 |
178.9 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
3.5 |
359.8 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.1 |
| H4 |
C4 |
C5 |
C6 |
178.2 |
179.9 |
| H4 |
C4 |
C5 |
H5 |
358.2 |
0.0 |
| C5 |
C6 |
C1 |
C1' |
183.3 |
179.8 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.5 |
| C6 |
C5 |
C4 |
H4 |
178.2 |
179.9 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.2 |
| H5 |
C5 |
C4 |
H4 |
358.2 |
0.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
358.9 |
359.9 |
| H6 |
C6 |
C1 |
C1' |
3.3 |
0.3 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
179.5 |
| H6 |
C6 |
C5 |
H5 |
358.9 |
359.9 |
| C1 |
C1' |
C2' |
H1'1 |
125.3 |
239.9 |
| C1 |
C1' |
C2' |
H1'2 |
234.8 |
120.0 |
| H1'1 |
C1' |
C2' |
H1'2 |
109.5 |
240.1 |
| C3' |
C2' |
C1' |
C4' |
122.2 |
240.0 |
| C3' |
C2' |
C1' |
H2' |
240.1 |
120.0 |
| C1' |
C2' |
C3' |
H3'1 |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
H3'2 |
305.3 |
300.1 |
| C1' |
C2' |
C3' |
H3'3 |
54.7 |
59.9 |
| C4' |
C2' |
C1' |
H2' |
117.9 |
240.0 |
| C1' |
C2' |
C4' |
H4'1 |
180.0 |
300.0 |
| C1' |
C2' |
C4' |
H4'2 |
305.2 |
60.0 |
| C1' |
C2' |
C4' |
H4'3 |
54.7 |
179.9 |
| C1 |
C1' |
H1'1 |
C2' |
237.4 |
120.1 |
| C1 |
C1' |
H1'1 |
H1'2 |
118.7 |
240.0 |
| C2' |
C1' |
H1'1 |
H1'2 |
241.3 |
120.0 |
| H1'1 |
C1' |
C2' |
C3' |
68.1 |
300.1 |
| H1'1 |
C1' |
C2' |
C4' |
305.9 |
60.1 |
| H1'1 |
C1' |
C2' |
H2' |
188.0 |
180.0 |
| C1 |
C1' |
H1'2 |
C2' |
122.6 |
240.0 |
| C1 |
C1' |
H1'2 |
H1'1 |
241.3 |
120.0 |
| C2' |
C1' |
H1'2 |
H1'1 |
118.7 |
240.0 |
| H1'2 |
C1' |
C2' |
C3' |
318.6 |
60.0 |
| H1'2 |
C1' |
C2' |
C4' |
196.4 |
180.0 |
| H1'2 |
C1' |
C2' |
H2' |
78.5 |
300.0 |
| C3' |
C2' |
C1' |
H1'1 |
68.1 |
300.1 |
| C3' |
C2' |
C1' |
H1'2 |
318.6 |
60.0 |
| C1' |
C2' |
C3' |
C4' |
237.8 |
120.0 |
| C1' |
C2' |
C3' |
H2' |
119.9 |
240.0 |
| C4' |
C2' |
C3' |
H2' |
242.1 |
119.9 |
| C3' |
C2' |
C4' |
H4'1 |
59.6 |
60.1 |
| C3' |
C2' |
C4' |
H4'2 |
184.8 |
180.1 |
| C3' |
C2' |
C4' |
H4'3 |
294.4 |
300.0 |
| H3'1 |
C3' |
C2' |
H3'2 |
234.7 |
239.9 |
| H3'1 |
C3' |
C2' |
H3'3 |
125.3 |
120.1 |
| H3'2 |
C3' |
C2' |
H3'3 |
250.6 |
240.1 |
| C4' |
C2' |
C1' |
H1'1 |
305.9 |
60.1 |
| C4' |
C2' |
C1' |
H1'2 |
196.4 |
180.0 |
| C1' |
C2' |
C4' |
C3' |
120.4 |
239.9 |
| C1' |
C2' |
C4' |
H2' |
240.2 |
120.0 |
| C3' |
C2' |
C4' |
H2' |
119.8 |
240.0 |
| C4' |
C2' |
C3' |
H3'1 |
302.2 |
60.0 |
| C4' |
C2' |
C3' |
H3'2 |
67.5 |
180.0 |
| C4' |
C2' |
C3' |
H3'3 |
177.0 |
299.9 |
| H4'1 |
C4' |
C2' |
H4'2 |
234.8 |
240.0 |
| H4'1 |
C4' |
C2' |
H4'3 |
125.3 |
120.1 |
| H4'2 |
C4' |
C2' |
H4'3 |
250.5 |
240.1 |
| H2' |
C2' |
C1' |
H1'1 |
188.0 |
180.0 |
| H2' |
C2' |
C1' |
H1'2 |
78.5 |
300.0 |
| C1' |
C2' |
H2' |
C3' |
241.3 |
120.1 |
| C1' |
C2' |
H2' |
C4' |
120.7 |
240.0 |
| C3' |
C2' |
H2' |
C4' |
239.4 |
120.0 |
| H2' |
C2' |
C3' |
H3'1 |
60.1 |
300.0 |
| H2' |
C2' |
C3' |
H3'2 |
185.4 |
60.1 |
| H2' |
C2' |
C3' |
H3'3 |
294.9 |
180.0 |
| H2' |
C2' |
C4' |
H4'1 |
299.8 |
180.0 |
| H2' |
C2' |
C4' |
H4'2 |
65.0 |
300.0 |
| H2' |
C2' |
C4' |
H4'3 |
174.5 |
59.9 |
| H3'1 |
C3' |
C2' |
C4' |
302.2 |
60.0 |
| H3'1 |
C3' |
C2' |
H2' |
60.1 |
300.0 |
| C2' |
C3' |
H3'1 |
H3'2 |
125.3 |
120.0 |
| C2' |
C3' |
H3'1 |
H3'3 |
234.8 |
239.9 |
| H3'2 |
C3' |
H3'1 |
H3'3 |
109.5 |
119.9 |
| H3'2 |
C3' |
C2' |
C4' |
67.5 |
180.0 |
| H3'2 |
C3' |
C2' |
H2' |
185.4 |
60.1 |
| C2' |
C3' |
H3'2 |
H3'1 |
237.3 |
239.9 |
| C2' |
C3' |
H3'2 |
H3'3 |
118.6 |
119.9 |
| H3'1 |
C3' |
H3'2 |
H3'3 |
241.3 |
240.0 |
| H3'3 |
C3' |
C2' |
C4' |
177.0 |
299.9 |
| H3'3 |
C3' |
C2' |
H2' |
294.9 |
180.0 |
| C2' |
C3' |
H3'3 |
H3'1 |
122.6 |
120.1 |
| C2' |
C3' |
H3'3 |
H3'2 |
241.3 |
240.1 |
| H3'1 |
C3' |
H3'3 |
H3'2 |
118.7 |
120.0 |
| H4'1 |
C4' |
C2' |
H2' |
299.8 |
180.0 |
| C2' |
C4' |
H4'1 |
H4'2 |
125.2 |
120.0 |
| C2' |
C4' |
H4'1 |
H4'3 |
234.7 |
239.9 |
| H4'2 |
C4' |
H4'1 |
H4'3 |
109.5 |
120.0 |
| H4'2 |
C4' |
C2' |
H2' |
65.0 |
300.0 |
| C2' |
C4' |
H4'2 |
H4'1 |
235.0 |
240.0 |
| C2' |
C4' |
H4'2 |
H4'3 |
117.5 |
119.9 |
| H4'1 |
C4' |
H4'2 |
H4'3 |
242.5 |
240.0 |
| H4'3 |
C4' |
C2' |
H2' |
174.5 |
59.9 |
| C2' |
C4' |
H4'3 |
H4'1 |
125.0 |
120.1 |
| C2' |
C4' |
H4'3 |
H4'2 |
242.5 |
240.1 |
| H4'1 |
C4' |
H4'3 |
H4'2 |
117.5 |
120.0 |