PDB Chemical Component I3C
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for I3C
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| I3 |
C6 |
2.103 |
2.095 |
| I2 |
C4 |
2.099 |
2.094 |
| I1 |
C2 |
2.099 |
2.095 |
| O8 |
C7 |
1.243 |
1.214 |
| O9 |
C7 |
1.248 |
1.348 |
| C10 |
C3 |
1.506 |
1.476 |
| C10 |
O11 |
1.255 |
1.347 |
| C10 |
O12 |
1.250 |
1.215 |
| N13 |
C5 |
1.398 |
1.399 |
| C1 |
C6 |
1.403 |
1.398 |
| C1 |
C2 |
1.394 |
1.395 |
| C1 |
C7 |
1.509 |
1.476 |
| C6 |
C5 |
1.390 |
1.388 |
| C5 |
C4 |
1.419 |
1.388 |
| C4 |
C3 |
1.389 |
1.398 |
| C3 |
C2 |
1.398 |
1.395 |
| O9 |
HO9 |
0.950 |
0.967 |
| N13 |
HN13 |
0.999 |
0.969 |
| N13 |
HN1A |
1.000 |
0.969 |
| O11 |
HO11 |
0.950 |
0.967 |
Bond Angles for I3C
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| I3 |
C6 |
C1 |
118.4 |
120.0 |
| I3 |
C6 |
C5 |
121.1 |
120.0 |
| I2 |
C4 |
C5 |
117.1 |
119.9 |
| I2 |
C4 |
C3 |
119.4 |
120.0 |
| I1 |
C2 |
C1 |
120.7 |
120.1 |
| I1 |
C2 |
C3 |
119.7 |
120.1 |
| O8 |
C7 |
O9 |
129.0 |
120.0 |
| O8 |
C7 |
C1 |
110.4 |
120.0 |
| O9 |
C7 |
C1 |
120.5 |
120.0 |
| C7 |
O9 |
HO9 |
109.5 |
117.0 |
| C3 |
C10 |
O11 |
114.8 |
120.0 |
| C3 |
C10 |
O12 |
122.7 |
120.0 |
| C10 |
C3 |
C4 |
122.7 |
120.0 |
| C10 |
C3 |
C2 |
119.0 |
120.1 |
| O11 |
C10 |
O12 |
122.6 |
120.1 |
| C10 |
O11 |
HO11 |
109.5 |
116.9 |
| N13 |
C5 |
C6 |
123.8 |
119.9 |
| N13 |
C5 |
C4 |
119.3 |
119.9 |
| C5 |
N13 |
HN13 |
109.5 |
119.9 |
| C5 |
N13 |
HN1A |
109.5 |
119.9 |
| C6 |
C1 |
C2 |
121.3 |
119.9 |
| C6 |
C1 |
C7 |
120.7 |
120.0 |
| C1 |
C6 |
C5 |
120.5 |
120.1 |
| C2 |
C1 |
C7 |
118.0 |
120.1 |
| C1 |
C2 |
C3 |
119.6 |
119.8 |
| C6 |
C5 |
C4 |
116.9 |
120.2 |
| C5 |
C4 |
C3 |
123.5 |
120.1 |
| C4 |
C3 |
C2 |
118.2 |
119.9 |
| HN13 |
N13 |
HN1A |
109.5 |
120.1 |
Torsion Angles for I3C
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N13 |
C5 |
C6 |
I3 |
1.9 |
360.0 |
| I3 |
C6 |
C1 |
C2 |
181.5 |
180.0 |
| I3 |
C6 |
C1 |
C7 |
3.1 |
359.8 |
| C1 |
C6 |
I3 |
C5 |
180.0 |
180.0 |
| I3 |
C6 |
C5 |
C4 |
180.1 |
180.1 |
| C10 |
C3 |
C4 |
I2 |
360.0 |
360.0 |
| N13 |
C5 |
C4 |
I2 |
357.3 |
0.0 |
| C6 |
C5 |
C4 |
I2 |
179.1 |
179.9 |
| C5 |
C4 |
I2 |
C3 |
180.0 |
180.0 |
| I2 |
C4 |
C3 |
C2 |
180.1 |
180.0 |
| C10 |
C3 |
C2 |
I1 |
2.9 |
360.0 |
| C6 |
C1 |
C2 |
I1 |
176.4 |
180.0 |
| I1 |
C2 |
C1 |
C7 |
354.9 |
0.2 |
| C1 |
C2 |
I1 |
C3 |
181.2 |
180.0 |
| C4 |
C3 |
C2 |
I1 |
182.8 |
180.0 |
| O9 |
C7 |
O8 |
C1 |
179.1 |
180.0 |
| O8 |
C7 |
O9 |
HO9 |
0.0 |
0.0 |
| C6 |
C1 |
C7 |
O8 |
261.3 |
90.0 |
| C2 |
C1 |
C7 |
O8 |
82.8 |
269.8 |
| O8 |
C7 |
O9 |
C1 |
181.0 |
180.0 |
| C6 |
C1 |
C7 |
O9 |
82.1 |
270.0 |
| C2 |
C1 |
C7 |
O9 |
263.6 |
89.8 |
| I2 |
C4 |
C3 |
C10 |
360.0 |
360.0 |
| I1 |
C2 |
C3 |
C10 |
2.9 |
360.0 |
| O11 |
C10 |
C3 |
O12 |
179.4 |
180.0 |
| C3 |
C10 |
O11 |
HO11 |
180.6 |
180.0 |
| C1 |
C2 |
C3 |
C10 |
181.6 |
180.0 |
| C5 |
C4 |
C3 |
C10 |
180.0 |
180.0 |
| C4 |
C3 |
C10 |
C2 |
180.1 |
180.0 |
| C3 |
C10 |
O11 |
O12 |
180.6 |
180.0 |
| O11 |
C10 |
C3 |
C4 |
274.3 |
270.0 |
| O11 |
C10 |
C3 |
C2 |
94.2 |
90.0 |
| C3 |
C10 |
O12 |
O11 |
179.4 |
180.0 |
| O12 |
C10 |
C3 |
C4 |
94.9 |
90.0 |
| O12 |
C10 |
C3 |
C2 |
274.8 |
270.0 |
| O12 |
C10 |
O11 |
HO11 |
360.0 |
0.0 |
| I3 |
C6 |
C5 |
N13 |
1.9 |
360.0 |
| I2 |
C4 |
C5 |
N13 |
357.3 |
0.0 |
| C1 |
C6 |
C5 |
N13 |
182.0 |
180.0 |
| C6 |
C5 |
N13 |
C4 |
178.1 |
180.1 |
| N13 |
C5 |
C4 |
C3 |
177.3 |
180.0 |
| HN13 |
N13 |
C5 |
HN1A |
240.0 |
179.9 |
| I3 |
C6 |
C1 |
C5 |
180.0 |
180.0 |
| I1 |
C2 |
C1 |
C6 |
176.4 |
180.0 |
| O8 |
C7 |
C1 |
C6 |
261.3 |
90.0 |
| O9 |
C7 |
C1 |
C6 |
82.1 |
270.0 |
| N13 |
C5 |
C6 |
C1 |
182.0 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
178.4 |
180.2 |
| C6 |
C1 |
C2 |
C3 |
357.7 |
0.0 |
| C1 |
C6 |
C5 |
C4 |
0.1 |
0.1 |
| I1 |
C2 |
C1 |
C3 |
178.8 |
180.0 |
| O8 |
C7 |
C1 |
C2 |
82.8 |
269.8 |
| O9 |
C7 |
C1 |
C2 |
263.6 |
89.8 |
| C10 |
C3 |
C2 |
C1 |
181.6 |
180.0 |
| C6 |
C1 |
C2 |
C7 |
181.5 |
179.8 |
| C2 |
C1 |
C6 |
C5 |
1.5 |
359.9 |
| C4 |
C3 |
C2 |
C1 |
1.5 |
0.0 |
| O8 |
C7 |
C1 |
O9 |
179.2 |
180.0 |
| C1 |
C7 |
O9 |
HO9 |
179.0 |
180.0 |
| C6 |
C1 |
C7 |
C2 |
178.5 |
180.2 |
| C7 |
C1 |
C6 |
C5 |
183.1 |
179.7 |
| C7 |
C1 |
C2 |
C3 |
176.1 |
180.2 |
| I3 |
C6 |
C5 |
C1 |
180.0 |
180.0 |
| I2 |
C4 |
C5 |
C6 |
179.1 |
179.9 |
| N13 |
C5 |
C6 |
C4 |
181.9 |
179.9 |
| C6 |
C5 |
N13 |
HN13 |
124.3 |
360.0 |
| C6 |
C5 |
N13 |
HN1A |
244.3 |
180.1 |
| C5 |
C6 |
C1 |
C2 |
1.5 |
359.9 |
| C5 |
C6 |
C1 |
C7 |
183.1 |
179.7 |
| C6 |
C5 |
C4 |
C3 |
359.1 |
359.9 |
| I2 |
C4 |
C5 |
C3 |
180.0 |
180.0 |
| C10 |
C3 |
C4 |
C5 |
180.0 |
180.0 |
| N13 |
C5 |
C4 |
C6 |
178.2 |
180.1 |
| C4 |
C5 |
N13 |
HN13 |
306.2 |
179.9 |
| C4 |
C5 |
N13 |
HN1A |
66.2 |
360.0 |
| C5 |
C4 |
C3 |
C2 |
0.1 |
0.0 |
| I2 |
C4 |
C3 |
C5 |
180.0 |
180.0 |
| I1 |
C2 |
C3 |
C4 |
182.8 |
180.0 |
| C4 |
C3 |
C10 |
O11 |
274.3 |
270.0 |
| C4 |
C3 |
C10 |
O12 |
94.9 |
90.0 |
| C10 |
C3 |
C4 |
C2 |
179.9 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
1.5 |
0.0 |
| I1 |
C2 |
C3 |
C1 |
181.2 |
180.0 |
| C2 |
C3 |
C10 |
O11 |
94.2 |
90.0 |
| C2 |
C3 |
C10 |
O12 |
274.8 |
270.0 |
| C10 |
C3 |
C2 |
C4 |
180.1 |
180.0 |
| C3 |
C2 |
C1 |
C7 |
176.1 |
180.2 |
| HO9 |
O9 |
C7 |
C1 |
179.0 |
180.0 |
| HN13 |
N13 |
C5 |
C6 |
124.3 |
360.0 |
| HN13 |
N13 |
C5 |
C4 |
306.2 |
179.9 |
| C5 |
N13 |
HN13 |
HN1A |
120.0 |
180.1 |
| HN1A |
N13 |
C5 |
C6 |
244.3 |
180.1 |
| HN1A |
N13 |
C5 |
C4 |
66.2 |
360.0 |
| C5 |
N13 |
HN1A |
HN13 |
240.0 |
179.9 |
| HO11 |
O11 |
C10 |
O12 |
360.0 |
0.0 |