PDB Chemical Component I2M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for I2M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.457 1.469
CA CB 1.567 1.530
CA C 1.540 1.507
CB CG3 1.543 1.530
CB CG2 1.537 1.531
CB CG1 1.554 1.530
CG1 CD1 1.527 1.530
C O 1.238 1.208
C OXT 1.333 1.342
N H 1.000 1.008
N H2 1.000 1.009
CA HA 1.100 1.090
CG3 HG31 1.100 1.090
CG3 HG32 1.100 1.090
CG3 HG33 1.100 1.090
CG2 HG21 1.100 1.090
CG2 HG22 1.100 1.089
CG2 HG23 1.100 1.090
CG1 HG12 1.100 1.090
CG1 HG13 1.100 1.090
CD1 HD11 1.100 1.090
CD1 HD12 1.100 1.090
CD1 HD13 1.101 1.090
OXT HXT 0.950 0.967

Bond Angles for I2M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N CA CB 110.7 109.5
N CA C 107.5 109.5
CA N H 109.5 111.0
CA N H2 109.5 111.0
N CA HA 111.8 109.5
CB CA C 114.6 109.5
CA CB CG3 114.5 109.5
CA CB CG2 108.2 109.5
CA CB CG1 114.8 109.5
CB CA HA 104.4 109.5
CA C O 119.8 120.0
CA C OXT 120.2 120.0
C CA HA 107.8 109.4
CG3 CB CG2 107.0 109.5
CG3 CB CG1 103.0 109.5
CB CG3 HG31 109.5 109.5
CB CG3 HG32 109.5 109.5
CB CG3 HG33 109.5 109.4
CG2 CB CG1 108.9 109.5
CB CG2 HG21 109.5 109.4
CB CG2 HG22 109.4 109.4
CB CG2 HG23 109.5 109.4
CB CG1 CD1 117.3 109.5
CB CG1 HG12 106.9 109.5
CB CG1 HG13 105.1 109.5
CD1 CG1 HG12 106.9 109.5
CD1 CG1 HG13 105.1 109.5
CG1 CD1 HD11 109.5 109.5
CG1 CD1 HD12 109.4 109.5
CG1 CD1 HD13 109.4 109.5
O C OXT 119.9 120.0
C OXT HXT 109.5 117.0
H N H2 109.4 111.1
HG31 CG3 HG32 109.5 109.5
HG31 CG3 HG33 109.5 109.5
HG32 CG3 HG33 109.5 109.5
HG21 CG2 HG22 109.5 109.5
HG21 CG2 HG23 109.5 109.5
HG22 CG2 HG23 109.5 109.5
HG12 CG1 HG13 115.8 109.4
HD11 CD1 HD12 109.5 109.5
HD11 CD1 HD13 109.4 109.4
HD12 CD1 HD13 109.5 109.5

Torsion Angles for I2M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CB CA N C 234.2 240.0
N CA CB CG3 81.5 60.0
N CA CB CG2 200.8 180.0
N CA CB CG1 322.6 300.0
CB CA N HA 116.0 120.0
N CA C O 305.0 340.0
N CA C OXT 122.7 160.0
C CA N HA 241.8 240.0
H N CA H2 240.0 236.0
N CA CB C 121.8 120.0
CB CA N H 290.5 299.9
CB CA N H2 50.5 64.0
N CA CB HA 239.5 240.0
CB CA C O 68.5 99.9
CB CA C OXT 246.2 280.0
C CA CB HA 117.7 120.0
CG3 CB CA CG2 240.7 240.0
CG3 CB CA CG1 118.9 120.0
CA CB CG3 HG31 114.4 60.0
CA CB CG3 HG32 234.4 180.0
CA CB CG3 HG33 354.4 300.0
CG2 CB CA CG1 238.2 240.0
CA CB CG2 HG21 62.8 60.0
CA CB CG2 HG22 182.8 180.0
CA CB CG2 HG23 302.8 300.0
CA CB CG1 CD1 304.4 180.0
CA CB CG1 HG12 64.4 300.1
CA CB CG1 HG13 188.1 60.0
N CA C CB 236.5 240.0
C CA N H 56.3 60.0
C CA N H2 176.3 184.0
N CA C HA 120.7 120.0
C CA CB CG3 319.7 300.0
C CA CB CG2 79.0 60.0
C CA CB CG1 200.8 180.0
CB CA C HA 244.3 240.0
O C CA OXT 182.4 179.9
CA C OXT HXT 182.4 180.0
CG3 CB CA C 319.7 300.0
CA CB CG3 CG2 119.9 120.0
CA CB CG3 CG1 234.6 240.0
CG3 CB CA HA 202.0 180.0
CG2 CB CG3 CG1 114.7 120.0
CG3 CB CG2 HG21 186.7 180.0
CG3 CB CG2 HG22 306.7 300.0
CG3 CB CG2 HG23 66.7 60.0
CG3 CB CG1 CD1 179.2 60.0
CG3 CB CG1 HG12 299.2 180.0
CG3 CB CG1 HG13 62.9 300.0
HG31 CG3 CB HG32 240.0 240.0
HG31 CG3 CB HG33 120.0 120.0
HG32 CG3 CB HG33 240.0 240.0
CG2 CB CA C 79.0 60.0
CA CB CG2 CG3 236.1 240.0
CA CB CG2 CG1 125.4 120.0
CG2 CB CA HA 321.3 300.0
CG3 CB CG2 CG1 249.3 240.0
CG2 CB CG3 HG31 354.5 300.0
CG2 CB CG3 HG32 114.5 60.0
CG2 CB CG3 HG33 234.5 180.0
CG2 CB CG1 CD1 65.8 300.0
CG2 CB CG1 HG12 185.8 60.1
CG2 CB CG1 HG13 309.5 180.0
HG21 CG2 CB HG22 240.0 240.0
HG21 CG2 CB HG23 120.0 120.0
HG22 CG2 CB HG23 240.0 240.0
CG1 CB CA C 200.8 180.0
CA CB CG1 CG3 125.2 120.0
CA CB CG1 CG2 238.6 240.0
CG1 CB CA HA 83.1 60.0
CG3 CB CG1 CG2 113.4 120.0
CG1 CB CG3 HG31 239.8 180.1
CG1 CB CG3 HG32 359.8 300.0
CG1 CB CG3 HG33 119.8 60.0
CG1 CB CG2 HG21 297.4 300.0
CG1 CB CG2 HG22 57.4 60.0
CG1 CB CG2 HG23 177.5 180.0
CD1 CG1 CB HG12 240.0 239.9
CD1 CG1 CB HG13 116.3 120.0
CB CG1 CD1 HD11 120.6 300.0
CB CG1 CD1 HD12 240.6 60.0
CB CG1 CD1 HD13 0.6 180.0
HG12 CG1 CB HG13 236.3 240.1
CB CG1 CD1 HG12 120.0 120.0
CB CG1 CD1 HG13 243.6 240.0
HG12 CG1 CD1 HG13 123.7 119.9
HD11 CD1 CG1 HD12 240.0 240.0
HD11 CD1 CG1 HD13 120.0 120.0
HD12 CD1 CG1 HD13 240.0 240.0
CA C O OXT 177.6 180.1
O C CA HA 184.3 220.0
O C OXT HXT 0.0 0.1
CA C OXT O 182.4 179.9
OXT C CA HA 1.9 40.1
H N CA CB 290.5 299.9
H N CA C 56.3 60.0
CA N H H2 120.0 124.0
H N CA HA 174.5 179.9
H2 N CA CB 50.5 64.0
H2 N CA C 176.3 184.0
CA N H2 H 240.0 236.0
H2 N CA HA 294.5 304.0
N CA HA CB 119.8 120.0
N CA HA C 242.0 240.0
HA CA N H 174.5 179.9
HA CA N H2 294.5 304.0
CB CA HA C 122.2 120.0
HA CA CB CG3 202.0 180.0
HA CA CB CG2 321.3 300.0
HA CA CB CG1 83.1 60.0
HA CA C O 184.3 220.0
HA CA C OXT 1.9 40.1
HG31 CG3 CB CG2 354.5 300.0
HG31 CG3 CB CG1 239.8 180.1
CB CG3 HG31 HG32 120.0 120.0
CB CG3 HG31 HG33 240.0 240.0
HG32 CG3 HG31 HG33 120.0 120.0
HG32 CG3 CB CG2 114.5 60.0
HG32 CG3 CB CG1 359.8 300.0
CB CG3 HG32 HG31 240.0 240.0
CB CG3 HG32 HG33 120.0 119.9
HG31 CG3 HG32 HG33 240.0 239.9
HG33 CG3 CB CG2 234.5 180.0
HG33 CG3 CB CG1 119.8 60.0
CB CG3 HG33 HG31 120.0 120.0
CB CG3 HG33 HG32 240.0 240.0
HG31 CG3 HG33 HG32 120.0 120.0
HG21 CG2 CB CG1 297.4 300.0
CB CG2 HG21 HG22 120.0 119.9
CB CG2 HG21 HG23 240.0 240.0
HG22 CG2 HG21 HG23 120.1 120.1
HG22 CG2 CB CG1 57.4 60.0
CB CG2 HG22 HG21 240.0 240.1
CB CG2 HG22 HG23 120.0 120.0
HG21 CG2 HG22 HG23 240.0 239.9
HG23 CG2 CB CG1 177.5 180.0
CB CG2 HG23 HG21 120.0 120.0
CB CG2 HG23 HG22 240.0 240.0
HG21 CG2 HG23 HG22 120.0 120.1
CB CG1 HG12 CD1 233.6 239.9
CB CG1 HG12 HG13 116.8 120.0
CD1 CG1 HG12 HG13 243.2 240.0
HG12 CG1 CD1 HD11 0.6 180.0
HG12 CG1 CD1 HD12 120.6 300.0
HG12 CG1 CD1 HD13 240.6 60.0
CB CG1 HG13 CD1 124.4 120.0
CB CG1 HG13 HG12 242.2 240.0
CD1 CG1 HG13 HG12 117.8 120.0
HG13 CG1 CD1 HD11 237.0 60.0
HG13 CG1 CD1 HD12 357.0 180.1
HG13 CG1 CD1 HD13 117.0 300.1
HD11 CD1 CG1 HG12 0.6 180.0
HD11 CD1 CG1 HG13 237.0 60.0
CG1 CD1 HD11 HD12 120.0 120.0
CG1 CD1 HD11 HD13 240.0 240.0
HD12 CD1 HD11 HD13 120.0 120.0
HD12 CD1 CG1 HG12 120.6 300.0
HD12 CD1 CG1 HG13 357.0 180.1
CG1 CD1 HD12 HD11 240.0 240.0
CG1 CD1 HD12 HD13 120.0 120.0
HD11 CD1 HD12 HD13 240.0 240.0
HD13 CD1 CG1 HG12 240.6 60.0
HD13 CD1 CG1 HG13 117.0 300.1
CG1 CD1 HD13 HD11 120.0 120.0
CG1 CD1 HD13 HD12 240.1 240.0
HD11 CD1 HD13 HD12 120.0 120.0