PDB Chemical Component I2M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for I2M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.457 |
1.469 |
| CA |
CB |
1.567 |
1.530 |
| CA |
C |
1.540 |
1.507 |
| CB |
CG3 |
1.543 |
1.530 |
| CB |
CG2 |
1.537 |
1.531 |
| CB |
CG1 |
1.554 |
1.530 |
| CG1 |
CD1 |
1.527 |
1.530 |
| C |
O |
1.238 |
1.208 |
| C |
OXT |
1.333 |
1.342 |
| N |
H |
1.000 |
1.008 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CG3 |
HG31 |
1.100 |
1.090 |
| CG3 |
HG32 |
1.100 |
1.090 |
| CG3 |
HG33 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.089 |
| CG2 |
HG23 |
1.100 |
1.090 |
| CG1 |
HG12 |
1.100 |
1.090 |
| CG1 |
HG13 |
1.100 |
1.090 |
| CD1 |
HD11 |
1.100 |
1.090 |
| CD1 |
HD12 |
1.100 |
1.090 |
| CD1 |
HD13 |
1.101 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for I2M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
110.7 |
109.5 |
| N |
CA |
C |
107.5 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
111.8 |
109.5 |
| CB |
CA |
C |
114.6 |
109.5 |
| CA |
CB |
CG3 |
114.5 |
109.5 |
| CA |
CB |
CG2 |
108.2 |
109.5 |
| CA |
CB |
CG1 |
114.8 |
109.5 |
| CB |
CA |
HA |
104.4 |
109.5 |
| CA |
C |
O |
119.8 |
120.0 |
| CA |
C |
OXT |
120.2 |
120.0 |
| C |
CA |
HA |
107.8 |
109.4 |
| CG3 |
CB |
CG2 |
107.0 |
109.5 |
| CG3 |
CB |
CG1 |
103.0 |
109.5 |
| CB |
CG3 |
HG31 |
109.5 |
109.5 |
| CB |
CG3 |
HG32 |
109.5 |
109.5 |
| CB |
CG3 |
HG33 |
109.5 |
109.4 |
| CG2 |
CB |
CG1 |
108.9 |
109.5 |
| CB |
CG2 |
HG21 |
109.5 |
109.4 |
| CB |
CG2 |
HG22 |
109.4 |
109.4 |
| CB |
CG2 |
HG23 |
109.5 |
109.4 |
| CB |
CG1 |
CD1 |
117.3 |
109.5 |
| CB |
CG1 |
HG12 |
106.9 |
109.5 |
| CB |
CG1 |
HG13 |
105.1 |
109.5 |
| CD1 |
CG1 |
HG12 |
106.9 |
109.5 |
| CD1 |
CG1 |
HG13 |
105.1 |
109.5 |
| CG1 |
CD1 |
HD11 |
109.5 |
109.5 |
| CG1 |
CD1 |
HD12 |
109.4 |
109.5 |
| CG1 |
CD1 |
HD13 |
109.4 |
109.5 |
| O |
C |
OXT |
119.9 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.4 |
111.1 |
| HG31 |
CG3 |
HG32 |
109.5 |
109.5 |
| HG31 |
CG3 |
HG33 |
109.5 |
109.5 |
| HG32 |
CG3 |
HG33 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
109.5 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
| HG12 |
CG1 |
HG13 |
115.8 |
109.4 |
| HD11 |
CD1 |
HD12 |
109.5 |
109.5 |
| HD11 |
CD1 |
HD13 |
109.4 |
109.4 |
| HD12 |
CD1 |
HD13 |
109.5 |
109.5 |
Torsion Angles for I2M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C |
234.2 |
240.0 |
| N |
CA |
CB |
CG3 |
81.5 |
60.0 |
| N |
CA |
CB |
CG2 |
200.8 |
180.0 |
| N |
CA |
CB |
CG1 |
322.6 |
300.0 |
| CB |
CA |
N |
HA |
116.0 |
120.0 |
| N |
CA |
C |
O |
305.0 |
340.0 |
| N |
CA |
C |
OXT |
122.7 |
160.0 |
| C |
CA |
N |
HA |
241.8 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
CB |
C |
121.8 |
120.0 |
| CB |
CA |
N |
H |
290.5 |
299.9 |
| CB |
CA |
N |
H2 |
50.5 |
64.0 |
| N |
CA |
CB |
HA |
239.5 |
240.0 |
| CB |
CA |
C |
O |
68.5 |
99.9 |
| CB |
CA |
C |
OXT |
246.2 |
280.0 |
| C |
CA |
CB |
HA |
117.7 |
120.0 |
| CG3 |
CB |
CA |
CG2 |
240.7 |
240.0 |
| CG3 |
CB |
CA |
CG1 |
118.9 |
120.0 |
| CA |
CB |
CG3 |
HG31 |
114.4 |
60.0 |
| CA |
CB |
CG3 |
HG32 |
234.4 |
180.0 |
| CA |
CB |
CG3 |
HG33 |
354.4 |
300.0 |
| CG2 |
CB |
CA |
CG1 |
238.2 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
62.8 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
182.8 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
302.8 |
300.0 |
| CA |
CB |
CG1 |
CD1 |
304.4 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
64.4 |
300.1 |
| CA |
CB |
CG1 |
HG13 |
188.1 |
60.0 |
| N |
CA |
C |
CB |
236.5 |
240.0 |
| C |
CA |
N |
H |
56.3 |
60.0 |
| C |
CA |
N |
H2 |
176.3 |
184.0 |
| N |
CA |
C |
HA |
120.7 |
120.0 |
| C |
CA |
CB |
CG3 |
319.7 |
300.0 |
| C |
CA |
CB |
CG2 |
79.0 |
60.0 |
| C |
CA |
CB |
CG1 |
200.8 |
180.0 |
| CB |
CA |
C |
HA |
244.3 |
240.0 |
| O |
C |
CA |
OXT |
182.4 |
179.9 |
| CA |
C |
OXT |
HXT |
182.4 |
180.0 |
| CG3 |
CB |
CA |
C |
319.7 |
300.0 |
| CA |
CB |
CG3 |
CG2 |
119.9 |
120.0 |
| CA |
CB |
CG3 |
CG1 |
234.6 |
240.0 |
| CG3 |
CB |
CA |
HA |
202.0 |
180.0 |
| CG2 |
CB |
CG3 |
CG1 |
114.7 |
120.0 |
| CG3 |
CB |
CG2 |
HG21 |
186.7 |
180.0 |
| CG3 |
CB |
CG2 |
HG22 |
306.7 |
300.0 |
| CG3 |
CB |
CG2 |
HG23 |
66.7 |
60.0 |
| CG3 |
CB |
CG1 |
CD1 |
179.2 |
60.0 |
| CG3 |
CB |
CG1 |
HG12 |
299.2 |
180.0 |
| CG3 |
CB |
CG1 |
HG13 |
62.9 |
300.0 |
| HG31 |
CG3 |
CB |
HG32 |
240.0 |
240.0 |
| HG31 |
CG3 |
CB |
HG33 |
120.0 |
120.0 |
| HG32 |
CG3 |
CB |
HG33 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
C |
79.0 |
60.0 |
| CA |
CB |
CG2 |
CG3 |
236.1 |
240.0 |
| CA |
CB |
CG2 |
CG1 |
125.4 |
120.0 |
| CG2 |
CB |
CA |
HA |
321.3 |
300.0 |
| CG3 |
CB |
CG2 |
CG1 |
249.3 |
240.0 |
| CG2 |
CB |
CG3 |
HG31 |
354.5 |
300.0 |
| CG2 |
CB |
CG3 |
HG32 |
114.5 |
60.0 |
| CG2 |
CB |
CG3 |
HG33 |
234.5 |
180.0 |
| CG2 |
CB |
CG1 |
CD1 |
65.8 |
300.0 |
| CG2 |
CB |
CG1 |
HG12 |
185.8 |
60.1 |
| CG2 |
CB |
CG1 |
HG13 |
309.5 |
180.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
| CG1 |
CB |
CA |
C |
200.8 |
180.0 |
| CA |
CB |
CG1 |
CG3 |
125.2 |
120.0 |
| CA |
CB |
CG1 |
CG2 |
238.6 |
240.0 |
| CG1 |
CB |
CA |
HA |
83.1 |
60.0 |
| CG3 |
CB |
CG1 |
CG2 |
113.4 |
120.0 |
| CG1 |
CB |
CG3 |
HG31 |
239.8 |
180.1 |
| CG1 |
CB |
CG3 |
HG32 |
359.8 |
300.0 |
| CG1 |
CB |
CG3 |
HG33 |
119.8 |
60.0 |
| CG1 |
CB |
CG2 |
HG21 |
297.4 |
300.0 |
| CG1 |
CB |
CG2 |
HG22 |
57.4 |
60.0 |
| CG1 |
CB |
CG2 |
HG23 |
177.5 |
180.0 |
| CD1 |
CG1 |
CB |
HG12 |
240.0 |
239.9 |
| CD1 |
CG1 |
CB |
HG13 |
116.3 |
120.0 |
| CB |
CG1 |
CD1 |
HD11 |
120.6 |
300.0 |
| CB |
CG1 |
CD1 |
HD12 |
240.6 |
60.0 |
| CB |
CG1 |
CD1 |
HD13 |
0.6 |
180.0 |
| HG12 |
CG1 |
CB |
HG13 |
236.3 |
240.1 |
| CB |
CG1 |
CD1 |
HG12 |
120.0 |
120.0 |
| CB |
CG1 |
CD1 |
HG13 |
243.6 |
240.0 |
| HG12 |
CG1 |
CD1 |
HG13 |
123.7 |
119.9 |
| HD11 |
CD1 |
CG1 |
HD12 |
240.0 |
240.0 |
| HD11 |
CD1 |
CG1 |
HD13 |
120.0 |
120.0 |
| HD12 |
CD1 |
CG1 |
HD13 |
240.0 |
240.0 |
| CA |
C |
O |
OXT |
177.6 |
180.1 |
| O |
C |
CA |
HA |
184.3 |
220.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.1 |
| CA |
C |
OXT |
O |
182.4 |
179.9 |
| OXT |
C |
CA |
HA |
1.9 |
40.1 |
| H |
N |
CA |
CB |
290.5 |
299.9 |
| H |
N |
CA |
C |
56.3 |
60.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
174.5 |
179.9 |
| H2 |
N |
CA |
CB |
50.5 |
64.0 |
| H2 |
N |
CA |
C |
176.3 |
184.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
294.5 |
304.0 |
| N |
CA |
HA |
CB |
119.8 |
120.0 |
| N |
CA |
HA |
C |
242.0 |
240.0 |
| HA |
CA |
N |
H |
174.5 |
179.9 |
| HA |
CA |
N |
H2 |
294.5 |
304.0 |
| CB |
CA |
HA |
C |
122.2 |
120.0 |
| HA |
CA |
CB |
CG3 |
202.0 |
180.0 |
| HA |
CA |
CB |
CG2 |
321.3 |
300.0 |
| HA |
CA |
CB |
CG1 |
83.1 |
60.0 |
| HA |
CA |
C |
O |
184.3 |
220.0 |
| HA |
CA |
C |
OXT |
1.9 |
40.1 |
| HG31 |
CG3 |
CB |
CG2 |
354.5 |
300.0 |
| HG31 |
CG3 |
CB |
CG1 |
239.8 |
180.1 |
| CB |
CG3 |
HG31 |
HG32 |
120.0 |
120.0 |
| CB |
CG3 |
HG31 |
HG33 |
240.0 |
240.0 |
| HG32 |
CG3 |
HG31 |
HG33 |
120.0 |
120.0 |
| HG32 |
CG3 |
CB |
CG2 |
114.5 |
60.0 |
| HG32 |
CG3 |
CB |
CG1 |
359.8 |
300.0 |
| CB |
CG3 |
HG32 |
HG31 |
240.0 |
240.0 |
| CB |
CG3 |
HG32 |
HG33 |
120.0 |
119.9 |
| HG31 |
CG3 |
HG32 |
HG33 |
240.0 |
239.9 |
| HG33 |
CG3 |
CB |
CG2 |
234.5 |
180.0 |
| HG33 |
CG3 |
CB |
CG1 |
119.8 |
60.0 |
| CB |
CG3 |
HG33 |
HG31 |
120.0 |
120.0 |
| CB |
CG3 |
HG33 |
HG32 |
240.0 |
240.0 |
| HG31 |
CG3 |
HG33 |
HG32 |
120.0 |
120.0 |
| HG21 |
CG2 |
CB |
CG1 |
297.4 |
300.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
119.9 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.1 |
120.1 |
| HG22 |
CG2 |
CB |
CG1 |
57.4 |
60.0 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.1 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
239.9 |
| HG23 |
CG2 |
CB |
CG1 |
177.5 |
180.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.1 |
| CB |
CG1 |
HG12 |
CD1 |
233.6 |
239.9 |
| CB |
CG1 |
HG12 |
HG13 |
116.8 |
120.0 |
| CD1 |
CG1 |
HG12 |
HG13 |
243.2 |
240.0 |
| HG12 |
CG1 |
CD1 |
HD11 |
0.6 |
180.0 |
| HG12 |
CG1 |
CD1 |
HD12 |
120.6 |
300.0 |
| HG12 |
CG1 |
CD1 |
HD13 |
240.6 |
60.0 |
| CB |
CG1 |
HG13 |
CD1 |
124.4 |
120.0 |
| CB |
CG1 |
HG13 |
HG12 |
242.2 |
240.0 |
| CD1 |
CG1 |
HG13 |
HG12 |
117.8 |
120.0 |
| HG13 |
CG1 |
CD1 |
HD11 |
237.0 |
60.0 |
| HG13 |
CG1 |
CD1 |
HD12 |
357.0 |
180.1 |
| HG13 |
CG1 |
CD1 |
HD13 |
117.0 |
300.1 |
| HD11 |
CD1 |
CG1 |
HG12 |
0.6 |
180.0 |
| HD11 |
CD1 |
CG1 |
HG13 |
237.0 |
60.0 |
| CG1 |
CD1 |
HD11 |
HD12 |
120.0 |
120.0 |
| CG1 |
CD1 |
HD11 |
HD13 |
240.0 |
240.0 |
| HD12 |
CD1 |
HD11 |
HD13 |
120.0 |
120.0 |
| HD12 |
CD1 |
CG1 |
HG12 |
120.6 |
300.0 |
| HD12 |
CD1 |
CG1 |
HG13 |
357.0 |
180.1 |
| CG1 |
CD1 |
HD12 |
HD11 |
240.0 |
240.0 |
| CG1 |
CD1 |
HD12 |
HD13 |
120.0 |
120.0 |
| HD11 |
CD1 |
HD12 |
HD13 |
240.0 |
240.0 |
| HD13 |
CD1 |
CG1 |
HG12 |
240.6 |
60.0 |
| HD13 |
CD1 |
CG1 |
HG13 |
117.0 |
300.1 |
| CG1 |
CD1 |
HD13 |
HD11 |
120.0 |
120.0 |
| CG1 |
CD1 |
HD13 |
HD12 |
240.1 |
240.0 |
| HD11 |
CD1 |
HD13 |
HD12 |
120.0 |
120.0 |