Atom Nomenclature for I1P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for I1P

Atom Name (V3) Atom Name (V2)
C22 C22
C1 C1
C2 C2
C7 C7
C6 C6
C3 C3
N5 N5
C11 C11
C10 C10
C9 C9
C17 C17
C14 C14
C13 C13
N15 N15
C18 C18
C19 C19
C20 C20
N4 N4
N8 N8
N13 N13
N16 N16
C21 C21
S23 S23
N24 N24
C25 C25
C26 C26
C27 C27
N28 N28
C29 C29
C30 C30
O31 O31
O32 O32
H22 H22
H1 H1
H2 H2
H6 H6
H11 H11
H9 H9
H13 H13
H18 H18
H19 H19
H16 H16
H21 H21
H24 H24
H251 1H25
H252 2H25
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H291 1H29
H292 2H29
H293 3H29
H301 1H30
H302 2H30
H303 3H30