Atom Nomenclature for I10

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for I10

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C16 C16
C20 C20
C24 C24
N29 N29
C30 C30
C31 C31
C35 C35
C4 C4
C5 C5
C6 C6
O15 O15
C17 C17
O34 O34
N36 N36
S39 S39
O40 O40
O41 O41
C42 C42
N43 N43
C44 C44
C45 C45
C46 C46
C47 C47
H1 H1
H2 H2
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H161 1H16
H162 2H16
H201 1H20
H202 2H20
H203 3H20
H241 1H24
H242 2H24
H243 3H24
HN2 HN2
H301 1H30
H302 2H30
H31 H31
H351 1H35
H352 2H35
H4 H4
H5 H5
H6 H6
H17 H17
HO3 HO3
HN3 HN3
H44 H44
H45 H45
H46 H46
H47 H47