PDB Chemical Component I0X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for I0X
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C10 |
1.412 |
1.348 |
N1 |
C1 |
1.493 |
1.465 |
N1 |
H1 |
1.000 |
0.970 |
O1 |
C2 |
1.377 |
1.213 |
C1 |
H2 |
1.100 |
1.090 |
C2 |
C1 |
1.479 |
1.507 |
C2 |
N2 |
1.502 |
1.347 |
C3 |
C1 |
1.444 |
1.530 |
C3 |
C4 |
1.558 |
1.508 |
C3 |
H3 |
1.100 |
1.090 |
C3 |
H4 |
1.100 |
1.089 |
C4 |
C9 |
1.475 |
1.383 |
C5 |
C4 |
1.450 |
1.383 |
C5 |
C7 |
1.467 |
1.382 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
C7 |
C8 |
1.417 |
1.383 |
C7 |
H7 |
1.080 |
1.080 |
C8 |
C6 |
1.451 |
1.382 |
C8 |
H8 |
1.080 |
1.080 |
C9 |
C6 |
1.477 |
1.383 |
C9 |
H9 |
1.080 |
1.080 |
C10 |
O2 |
1.224 |
1.215 |
C11 |
H10 |
1.100 |
1.090 |
C11 |
H11 |
1.100 |
1.090 |
N2 |
H12 |
1.000 |
0.970 |
O3 |
C10 |
1.372 |
1.346 |
O3 |
C11 |
1.454 |
1.452 |
C12 |
C11 |
1.373 |
1.506 |
C12 |
C13 |
1.460 |
1.383 |
C13 |
H13 |
1.080 |
1.081 |
O4 |
C24 |
1.586 |
1.428 |
C14 |
C13 |
1.452 |
1.382 |
C14 |
H14 |
1.080 |
1.080 |
O5 |
C26 |
1.228 |
1.217 |
C15 |
C14 |
1.434 |
1.383 |
C15 |
H15 |
1.079 |
1.080 |
C16 |
C15 |
1.440 |
1.383 |
C16 |
C17 |
1.452 |
1.382 |
C16 |
H16 |
1.080 |
1.080 |
C17 |
C12 |
1.452 |
1.382 |
C17 |
H17 |
1.080 |
1.080 |
C18 |
C28 |
1.442 |
1.383 |
C19 |
O4 |
1.318 |
1.359 |
C19 |
C30 |
1.597 |
1.386 |
C20 |
C18 |
1.407 |
1.507 |
C20 |
H18 |
1.101 |
1.089 |
C20 |
H19 |
1.100 |
1.091 |
C21 |
C24 |
1.534 |
1.530 |
C21 |
H20 |
1.100 |
1.090 |
C21 |
H21 |
1.100 |
1.091 |
C21 |
H22 |
1.100 |
1.091 |
C22 |
H23 |
1.100 |
1.091 |
C22 |
H24 |
1.100 |
1.090 |
C22 |
H25 |
1.100 |
1.089 |
C23 |
H26 |
1.100 |
1.090 |
C23 |
H27 |
1.100 |
1.090 |
C23 |
H28 |
1.100 |
1.090 |
C24 |
C22 |
1.555 |
1.530 |
C24 |
C23 |
1.524 |
1.530 |
C25 |
N2 |
1.575 |
1.464 |
C25 |
C20 |
1.575 |
1.531 |
C25 |
H29 |
1.100 |
1.091 |
C26 |
C25 |
1.568 |
1.507 |
C26 |
C31 |
1.342 |
1.390 |
C27 |
C18 |
1.453 |
1.383 |
C27 |
C29 |
1.398 |
1.381 |
C27 |
H30 |
1.080 |
1.080 |
C28 |
C30 |
1.421 |
1.382 |
C28 |
H31 |
1.080 |
1.080 |
C29 |
C19 |
1.454 |
1.387 |
C29 |
H32 |
1.080 |
1.081 |
C30 |
H33 |
1.080 |
1.081 |
N3 |
C31 |
1.470 |
1.251 |
C31 |
H34 |
1.080 |
1.079 |
N3 |
N4 |
1.377 |
1.124 |
Bond Angles for I0X
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
H1 |
115.6 |
120.0 |
N1 |
C1 |
H2 |
114.6 |
109.5 |
O1 |
C2 |
N2 |
109.3 |
120.0 |
C2 |
C1 |
H2 |
115.3 |
109.5 |
C3 |
C1 |
H2 |
102.3 |
109.5 |
C2 |
N2 |
H12 |
121.2 |
120.0 |
C4 |
C3 |
H3 |
108.4 |
109.4 |
C4 |
C3 |
H4 |
108.4 |
109.4 |
C3 |
C4 |
C9 |
119.6 |
120.0 |
H3 |
C3 |
H4 |
110.5 |
109.5 |
C4 |
C9 |
C6 |
118.9 |
120.0 |
C4 |
C9 |
H9 |
120.6 |
120.0 |
C7 |
C5 |
H5 |
120.4 |
120.0 |
C5 |
C7 |
C8 |
121.1 |
120.0 |
C5 |
C7 |
H7 |
119.5 |
120.0 |
C8 |
C6 |
H6 |
120.1 |
120.0 |
C9 |
C6 |
H6 |
120.1 |
120.0 |
C8 |
C7 |
H7 |
119.5 |
120.0 |
C7 |
C8 |
H8 |
119.6 |
119.9 |
C6 |
C9 |
H9 |
120.6 |
120.1 |
H10 |
C11 |
H11 |
108.4 |
109.5 |
O3 |
C11 |
H10 |
110.5 |
109.4 |
C12 |
C11 |
H10 |
110.5 |
109.5 |
O3 |
C11 |
H11 |
110.5 |
109.4 |
C12 |
C11 |
H11 |
110.5 |
109.5 |
C25 |
N2 |
H12 |
121.2 |
120.0 |
C12 |
C13 |
H13 |
120.7 |
120.0 |
C14 |
C13 |
H13 |
120.7 |
120.0 |
C19 |
O4 |
C24 |
126.3 |
117.1 |
O4 |
C24 |
C21 |
105.8 |
109.5 |
O4 |
C24 |
C22 |
118.3 |
109.5 |
O4 |
C24 |
C23 |
108.4 |
109.5 |
C15 |
C14 |
H14 |
120.6 |
120.0 |
O5 |
C26 |
C31 |
115.4 |
120.0 |
C16 |
C15 |
H15 |
118.7 |
120.0 |
C17 |
C16 |
H16 |
120.0 |
120.1 |
C16 |
C17 |
H17 |
121.2 |
120.0 |
C20 |
C18 |
C28 |
120.6 |
120.0 |
C27 |
C18 |
C28 |
124.7 |
120.1 |
C18 |
C28 |
C30 |
117.5 |
120.0 |
C18 |
C28 |
H31 |
121.2 |
119.9 |
C19 |
C30 |
C28 |
121.1 |
120.0 |
C29 |
C19 |
C30 |
113.7 |
119.9 |
C19 |
C30 |
H33 |
119.4 |
120.1 |
H18 |
C20 |
H19 |
111.6 |
109.5 |
C25 |
C20 |
H18 |
107.2 |
109.5 |
C25 |
C20 |
H19 |
107.2 |
109.4 |
C24 |
C21 |
H20 |
109.5 |
109.5 |
C24 |
C21 |
H21 |
109.5 |
109.5 |
C24 |
C21 |
H22 |
109.5 |
109.5 |
H20 |
C21 |
H21 |
109.5 |
109.4 |
H20 |
C21 |
H22 |
109.4 |
109.5 |
H21 |
C21 |
H22 |
109.5 |
109.4 |
H23 |
C22 |
H24 |
109.5 |
109.5 |
H23 |
C22 |
H25 |
109.4 |
109.5 |
C24 |
C22 |
H23 |
109.5 |
109.4 |
H24 |
C22 |
H25 |
109.5 |
109.5 |
C24 |
C22 |
H24 |
109.5 |
109.5 |
C24 |
C22 |
H25 |
109.5 |
109.5 |
H26 |
C23 |
H27 |
109.5 |
109.5 |
H26 |
C23 |
H28 |
109.5 |
109.5 |
C24 |
C23 |
H26 |
109.5 |
109.5 |
H27 |
C23 |
H28 |
109.5 |
109.5 |
C24 |
C23 |
H27 |
109.4 |
109.4 |
C24 |
C23 |
H28 |
109.5 |
109.5 |
C26 |
C25 |
H29 |
114.8 |
109.5 |
C25 |
C26 |
C31 |
122.4 |
120.0 |
C26 |
C31 |
H34 |
125.3 |
120.0 |
C29 |
C27 |
H30 |
121.3 |
120.0 |
C27 |
C29 |
H32 |
117.3 |
120.0 |
C30 |
C28 |
H31 |
121.2 |
120.0 |
C28 |
C30 |
H33 |
119.4 |
119.9 |
N3 |
C31 |
H34 |
125.3 |
120.0 |
Torsion Angles for I0X
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
N1 |
H2 |
236.3 |
240.0 |
C3 |
C1 |
N1 |
H2 |
116.8 |
120.0 |
H1 |
N1 |
C1 |
H2 |
237.1 |
144.7 |
O1 |
C2 |
C1 |
H2 |
182.3 |
240.0 |
O1 |
C2 |
N2 |
H12 |
179.7 |
180.0 |
H2 |
C1 |
N1 |
H1 |
237.1 |
144.7 |
C2 |
C1 |
N1 |
H1 |
113.4 |
24.7 |
N1 |
C1 |
C2 |
H2 |
123.2 |
120.0 |
C3 |
C1 |
C2 |
H2 |
243.2 |
240.0 |
N2 |
C2 |
C1 |
H2 |
9.6 |
60.0 |
C25 |
N2 |
C2 |
H12 |
180.0 |
179.9 |
C3 |
C1 |
N1 |
H1 |
353.9 |
264.8 |
N1 |
C1 |
C3 |
H2 |
236.1 |
240.0 |
C2 |
C1 |
C3 |
H2 |
124.3 |
120.0 |
C4 |
C3 |
C1 |
H2 |
75.0 |
55.0 |
H3 |
C3 |
C4 |
H4 |
120.0 |
120.0 |
C3 |
C4 |
C9 |
C6 |
179.4 |
179.8 |
C3 |
C4 |
C9 |
H9 |
359.4 |
360.0 |
H3 |
C3 |
C1 |
H2 |
195.0 |
174.9 |
C4 |
C3 |
H3 |
H4 |
241.3 |
240.0 |
H3 |
C3 |
C4 |
C9 |
186.3 |
330.0 |
H4 |
C3 |
C1 |
H2 |
314.9 |
295.0 |
C4 |
C3 |
H4 |
H3 |
118.7 |
120.0 |
H4 |
C3 |
C4 |
C9 |
66.3 |
210.0 |
C9 |
C4 |
C3 |
H3 |
186.3 |
330.0 |
C9 |
C4 |
C3 |
H4 |
66.3 |
210.0 |
C4 |
C9 |
C6 |
H6 |
180.4 |
180.2 |
C6 |
C9 |
C4 |
H9 |
180.0 |
179.8 |
C5 |
C4 |
C3 |
H3 |
6.2 |
150.2 |
C5 |
C4 |
C3 |
H4 |
246.2 |
30.2 |
C5 |
C4 |
C9 |
C6 |
359.4 |
359.6 |
C5 |
C4 |
C9 |
H9 |
179.5 |
179.8 |
C8 |
C7 |
C5 |
H7 |
180.0 |
180.1 |
C5 |
C7 |
C8 |
H8 |
179.6 |
180.0 |
H5 |
C5 |
C7 |
C8 |
180.1 |
180.0 |
H5 |
C5 |
C7 |
H7 |
0.1 |
359.9 |
H6 |
C6 |
C9 |
H9 |
0.4 |
0.0 |
C8 |
C7 |
C5 |
H5 |
180.1 |
180.0 |
C5 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
C7 |
C8 |
C6 |
H6 |
180.1 |
180.0 |
H7 |
C7 |
C5 |
H5 |
0.1 |
359.9 |
C5 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
H7 |
C7 |
C8 |
H8 |
359.7 |
0.1 |
C5 |
C7 |
C8 |
C6 |
359.7 |
359.9 |
C9 |
C6 |
C8 |
H6 |
180.0 |
179.8 |
C8 |
C6 |
C9 |
H9 |
180.4 |
180.2 |
H8 |
C8 |
C6 |
H6 |
0.1 |
360.0 |
H8 |
C8 |
C7 |
H7 |
359.7 |
0.1 |
C4 |
C9 |
C6 |
H9 |
180.0 |
180.2 |
C8 |
C6 |
C9 |
H6 |
180.0 |
180.2 |
C4 |
C9 |
H9 |
C6 |
180.0 |
179.8 |
H9 |
C9 |
C6 |
H6 |
0.4 |
0.0 |
O3 |
C11 |
H10 |
H11 |
121.2 |
119.9 |
C12 |
C11 |
H10 |
H11 |
238.7 |
239.9 |
O3 |
C11 |
H11 |
H10 |
238.8 |
240.1 |
C12 |
C11 |
H11 |
H10 |
121.3 |
120.1 |
H10 |
C11 |
O3 |
H11 |
240.0 |
240.0 |
C12 |
C11 |
O3 |
H10 |
240.0 |
240.0 |
C12 |
C11 |
O3 |
H11 |
120.0 |
120.0 |
H10 |
C11 |
C12 |
H11 |
120.0 |
120.1 |
O3 |
C11 |
C12 |
H10 |
120.0 |
120.0 |
O3 |
C11 |
C12 |
H11 |
240.0 |
240.0 |
C13 |
C12 |
C11 |
H10 |
342.8 |
330.0 |
C13 |
C12 |
C11 |
H11 |
222.7 |
210.0 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
O4 |
C24 |
C21 |
H20 |
180.0 |
65.2 |
O4 |
C24 |
C21 |
H21 |
300.0 |
185.2 |
O4 |
C24 |
C21 |
H22 |
60.0 |
305.2 |
O4 |
C24 |
C22 |
H23 |
180.0 |
60.0 |
O4 |
C24 |
C22 |
H24 |
300.0 |
180.0 |
O4 |
C24 |
C22 |
H25 |
60.0 |
300.0 |
O4 |
C24 |
C23 |
H26 |
180.0 |
54.8 |
O4 |
C24 |
C23 |
H27 |
300.0 |
174.8 |
O4 |
C24 |
C23 |
H28 |
60.0 |
294.8 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
H14 |
C14 |
C13 |
H13 |
0.1 |
360.0 |
O5 |
C26 |
C25 |
H29 |
54.3 |
225.0 |
C25 |
C26 |
O5 |
C31 |
181.7 |
180.0 |
O5 |
C26 |
C31 |
H34 |
126.6 |
180.0 |
C15 |
C14 |
C13 |
H13 |
180.1 |
180.1 |
H15 |
C15 |
C14 |
H14 |
359.9 |
0.1 |
C16 |
C15 |
C14 |
H14 |
179.9 |
180.1 |
C17 |
C16 |
C15 |
H15 |
180.2 |
179.7 |
H16 |
C16 |
C15 |
H15 |
0.2 |
360.0 |
H16 |
C16 |
C17 |
H17 |
359.9 |
359.7 |
C17 |
C12 |
C11 |
H10 |
163.1 |
149.7 |
C17 |
C12 |
C11 |
H11 |
43.1 |
29.7 |
C17 |
C12 |
C13 |
H13 |
179.9 |
180.3 |
H17 |
C17 |
C16 |
H16 |
359.9 |
359.7 |
C19 |
C30 |
C28 |
C18 |
360.0 |
0.5 |
C30 |
C28 |
C18 |
H31 |
180.0 |
180.0 |
C18 |
C28 |
C30 |
H33 |
180.0 |
180.0 |
C19 |
O4 |
C24 |
C21 |
67.3 |
55.3 |
C19 |
O4 |
C24 |
C22 |
312.3 |
175.3 |
C19 |
O4 |
C24 |
C23 |
181.6 |
295.3 |
C30 |
C19 |
O4 |
C24 |
89.8 |
185.3 |
C18 |
C28 |
C30 |
C19 |
360.0 |
0.5 |
C19 |
C30 |
C28 |
H31 |
179.9 |
180.5 |
C28 |
C30 |
C19 |
H33 |
180.0 |
179.5 |
C27 |
C18 |
C20 |
C28 |
179.3 |
180.2 |
C20 |
C18 |
C28 |
C30 |
179.0 |
180.0 |
C20 |
C18 |
C28 |
H31 |
359.1 |
360.0 |
H18 |
C20 |
C18 |
C28 |
49.6 |
210.0 |
C25 |
C20 |
H18 |
H19 |
242.9 |
240.0 |
H19 |
C20 |
C18 |
C28 |
169.6 |
330.1 |
C25 |
C20 |
H19 |
H18 |
117.1 |
120.0 |
O4 |
C24 |
C21 |
C22 |
235.1 |
120.0 |
O4 |
C24 |
C21 |
C23 |
115.4 |
240.0 |
H20 |
C21 |
C24 |
H21 |
240.0 |
240.0 |
H20 |
C21 |
C24 |
H22 |
120.0 |
120.0 |
H21 |
C21 |
C24 |
H22 |
240.0 |
240.0 |
C21 |
C24 |
C22 |
H23 |
63.6 |
180.0 |
C21 |
C24 |
C22 |
H24 |
183.6 |
300.0 |
C21 |
C24 |
C22 |
H25 |
303.6 |
60.0 |
C21 |
C24 |
C23 |
H26 |
293.7 |
294.8 |
C21 |
C24 |
C23 |
H27 |
53.7 |
54.8 |
C21 |
C24 |
C23 |
H28 |
173.7 |
174.8 |
C24 |
C21 |
H20 |
H21 |
120.0 |
120.0 |
C24 |
C21 |
H20 |
H22 |
240.0 |
239.9 |
H21 |
C21 |
H20 |
H22 |
120.0 |
119.9 |
C24 |
C21 |
H21 |
H20 |
240.0 |
239.9 |
C24 |
C21 |
H21 |
H22 |
120.0 |
120.0 |
H20 |
C21 |
H21 |
H22 |
240.0 |
240.1 |
C24 |
C21 |
H22 |
H20 |
120.0 |
120.1 |
C24 |
C21 |
H22 |
H21 |
240.0 |
240.0 |
H20 |
C21 |
H22 |
H21 |
120.0 |
119.9 |
H24 |
C22 |
H23 |
H25 |
120.0 |
120.0 |
C24 |
C22 |
H23 |
H24 |
120.0 |
120.0 |
C24 |
C22 |
H23 |
H25 |
240.0 |
240.0 |
H23 |
C22 |
H24 |
H25 |
240.0 |
240.0 |
C24 |
C22 |
H24 |
H23 |
240.0 |
240.1 |
C24 |
C22 |
H24 |
H25 |
120.0 |
120.0 |
H23 |
C22 |
H25 |
H24 |
120.0 |
120.0 |
C24 |
C22 |
H25 |
H23 |
120.0 |
119.9 |
C24 |
C22 |
H25 |
H24 |
240.0 |
240.0 |
H27 |
C23 |
H26 |
H28 |
120.0 |
120.0 |
C24 |
C23 |
H26 |
H27 |
120.0 |
120.0 |
C24 |
C23 |
H26 |
H28 |
240.0 |
240.0 |
H26 |
C23 |
H27 |
H28 |
240.0 |
240.0 |
C24 |
C23 |
H27 |
H26 |
240.0 |
240.0 |
C24 |
C23 |
H27 |
H28 |
120.0 |
120.0 |
H26 |
C23 |
H28 |
H27 |
120.0 |
120.0 |
C24 |
C23 |
H28 |
H26 |
120.0 |
120.0 |
C24 |
C23 |
H28 |
H27 |
240.0 |
240.0 |
O4 |
C24 |
C22 |
C21 |
116.4 |
240.0 |
O4 |
C24 |
C22 |
C23 |
231.6 |
120.0 |
H23 |
C22 |
C24 |
H24 |
240.0 |
240.0 |
H23 |
C22 |
C24 |
H25 |
120.0 |
120.0 |
H24 |
C22 |
C24 |
H25 |
240.0 |
239.9 |
C22 |
C24 |
C23 |
H26 |
46.6 |
174.9 |
C22 |
C24 |
C23 |
H27 |
166.6 |
294.8 |
C22 |
C24 |
C23 |
H28 |
286.6 |
54.8 |
O4 |
C24 |
C23 |
C21 |
246.3 |
120.0 |
O4 |
C24 |
C23 |
C22 |
133.4 |
240.0 |
H26 |
C23 |
C24 |
H27 |
240.0 |
240.0 |
H26 |
C23 |
C24 |
H28 |
120.0 |
120.0 |
H27 |
C23 |
C24 |
H28 |
240.0 |
240.0 |
C2 |
N2 |
C25 |
H12 |
180.0 |
180.1 |
C20 |
C25 |
N2 |
H12 |
316.7 |
334.9 |
C25 |
C20 |
C18 |
C28 |
289.6 |
90.0 |
H18 |
C20 |
C25 |
H19 |
120.0 |
120.0 |
H29 |
C25 |
N2 |
H12 |
196.2 |
215.0 |
H29 |
C25 |
C20 |
H18 |
64.9 |
295.0 |
H29 |
C25 |
C20 |
H19 |
304.9 |
175.0 |
H29 |
C25 |
C26 |
C31 |
236.1 |
44.9 |
C26 |
C25 |
N2 |
H12 |
72.1 |
94.9 |
O5 |
C26 |
C25 |
C31 |
178.2 |
180.0 |
C26 |
C25 |
C20 |
H18 |
189.1 |
55.0 |
C26 |
C25 |
C20 |
H19 |
69.1 |
294.9 |
C25 |
C26 |
C31 |
H34 |
304.9 |
0.0 |
C31 |
C26 |
C25 |
H29 |
236.1 |
44.9 |
N3 |
C31 |
C26 |
H34 |
180.0 |
180.0 |
C20 |
C18 |
C27 |
C28 |
180.7 |
179.8 |
C27 |
C18 |
C28 |
C30 |
359.8 |
359.8 |
C27 |
C18 |
C28 |
H31 |
179.8 |
179.8 |
C29 |
C27 |
C18 |
C28 |
0.1 |
359.9 |
C27 |
C29 |
C19 |
C30 |
359.7 |
0.2 |
H30 |
C27 |
C18 |
C28 |
180.1 |
180.0 |
H30 |
C27 |
C29 |
H32 |
0.2 |
0.1 |
C18 |
C28 |
C30 |
H31 |
180.0 |
180.0 |
C29 |
C19 |
C30 |
C28 |
0.3 |
359.5 |
C19 |
C30 |
C28 |
H33 |
180.0 |
180.5 |
C18 |
C28 |
H31 |
C30 |
180.0 |
180.0 |
H31 |
C28 |
C30 |
H33 |
359.9 |
0.0 |
C29 |
C19 |
C30 |
H33 |
180.3 |
180.0 |
H32 |
C29 |
C19 |
C30 |
179.7 |
180.2 |
H32 |
C29 |
C27 |
H30 |
0.2 |
0.1 |
C19 |
C30 |
H33 |
C28 |
180.0 |
179.5 |
H33 |
C30 |
C28 |
H31 |
359.9 |
0.0 |
C26 |
C31 |
N3 |
H34 |
180.0 |
180.0 |
N4 |
N3 |
C31 |
H34 |
327.0 |
27.1 |