PDB Chemical Component I

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for I

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.603 1.610
OP3 HOP3 0.950 0.967
P OP1 1.505 1.480
P OP2 1.494 1.610
P O5' 1.587 1.610
OP2 HOP2 0.950 0.968
O5' C5' 1.416 1.430
C5' C4' 1.510 1.531
C5' H5' 1.100 1.089
C5' H5'' 1.100 1.090
C4' O4' 1.454 1.438
C4' C3' 1.514 1.541
C4' H4' 1.100 1.090
O4' C1' 1.419 1.444
C3' O3' 1.421 1.429
C3' C2' 1.520 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.413 1.429
C2' C1' 1.534 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.456 1.465
C1' H1' 1.100 1.090
N9 C8 1.361 1.364
N9 C4 1.376 1.367
C8 N7 1.310 1.302
C8 H8 1.080 1.080
N7 C5 1.395 1.354
C5 C6 1.464 1.417
C5 C4 1.381 1.398
C6 O6 1.266 1.220
C6 N1 1.385 1.351
N1 C2 1.372 1.357
N1 H1 1.000 0.970
C2 N3 1.330 1.304
C2 H2 1.080 1.079
N3 C4 1.350 1.340

Bond Angles for I

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.5 114.0
OP3 P OP1 107.2 109.5
OP3 P OP2 111.3 109.5
OP3 P O5' 101.9 109.5
OP1 P OP2 119.9 109.5
OP1 P O5' 105.7 109.5
OP2 P O5' 109.3 109.4
P OP2 HOP2 109.5 114.0
P O5' C5' 119.0 122.9
O5' C5' C4' 110.5 109.4
O5' C5' H5' 109.2 109.4
O5' C5' H5'' 109.2 109.5
C4' C5' H5' 109.2 109.5
C4' C5' H5'' 109.2 109.4
C5' C4' O4' 110.3 109.9
C5' C4' C3' 117.0 109.9
C5' C4' H4' 108.7 109.8
H5' C5' H5'' 109.5 109.5
O4' C4' C3' 102.3 107.3
O4' C4' H4' 109.5 109.9
C4' O4' C1' 109.0 106.9
C3' C4' H4' 108.7 110.0
C4' C3' O3' 111.9 110.5
C4' C3' C2' 100.0 104.2
C4' C3' H3' 110.3 110.5
O4' C1' C2' 106.2 103.5
O4' C1' N9 109.0 110.6
O4' C1' H1' 111.4 110.6
O3' C3' C2' 112.3 110.5
O3' C3' H3' 111.7 110.5
C3' O3' HO3' 109.5 113.9
C2' C3' H3' 110.2 110.6
C3' C2' O2' 112.9 110.9
C3' C2' C1' 101.6 102.1
C3' C2' H2' 111.0 110.9
O2' C2' C1' 107.2 110.9
O2' C2' H2' 112.7 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 110.8 110.9
C2' C1' N9 109.7 110.6
C2' C1' H1' 109.7 110.6
N9 C1' H1' 110.8 110.7
C1' N9 C8 127.0 126.2
C1' N9 C4 126.1 126.3
C8 N9 C4 106.9 107.5
N9 C8 N7 113.2 109.7
N9 C8 H8 123.4 125.1
N9 C4 C5 105.3 106.1
N9 C4 N3 126.4 134.3
N7 C8 H8 123.4 125.1
C8 N7 C5 104.2 109.3
N7 C5 C6 131.0 134.3
N7 C5 C4 110.4 107.3
C6 C5 C4 118.6 118.4
C5 C6 O6 129.0 120.9
C5 C6 N1 111.1 118.2
C5 C4 N3 128.3 119.5
O6 C6 N1 119.9 120.9
C6 N1 C2 125.0 120.4
C6 N1 H1 117.5 119.8
C2 N1 H1 117.5 119.8
N1 C2 N3 124.9 122.2
N1 C2 H2 117.5 118.9
N3 C2 H2 117.6 118.9
C2 N3 C4 112.1 121.3

Torsion Angles for I

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 132.9 240.0
OP1 P OP3 O5' 249.2 120.1
OP2 P OP3 O5' 116.4 240.0
OP3 P OP2 HOP2 126.1 300.0
OP3 P O5' C5' 303.5 65.1
HOP3 OP3 P OP1 360.0 180.0
HOP3 OP3 P OP2 227.1 300.0
HOP3 OP3 P O5' 110.8 60.0
OP1 P OP3 HOP3 360.0 180.0
OP3 P OP1 OP2 232.0 120.0
OP3 P OP1 O5' 108.1 240.0
OP2 P OP1 O5' 236.1 120.0
OP1 P OP2 HOP2 0.0 60.0
OP1 P O5' C5' 55.4 305.0
OP2 P OP3 HOP3 227.1 300.0
OP3 P OP2 OP1 126.1 240.0
OP3 P OP2 O5' 248.3 120.0
OP1 P OP2 O5' 122.1 240.0
OP2 P O5' C5' 185.6 185.0
O5' P OP3 HOP3 110.8 60.0
OP3 P O5' OP1 248.1 120.0
OP3 P O5' OP2 117.8 240.0
OP1 P O5' OP2 229.7 120.0
O5' P OP2 HOP2 237.9 180.0
P O5' C5' C4' 160.3 180.0
P O5' C5' H5' 280.4 299.9
P O5' C5' H5'' 40.1 60.0
HOP2 OP2 P O5' 237.9 180.0
C4' C5' O5' H5' 239.9 240.0
C4' C5' O5' H5'' 120.2 120.0
O5' C5' C4' O4' 293.1 66.4
O5' C5' C4' C3' 49.5 184.3
O5' C5' C4' H4' 173.0 305.4
H5' C5' O5' H5'' 240.3 240.0
O5' C5' C4' H5' 120.1 119.9
O5' C5' C4' H5'' 239.8 240.0
H5' C5' C4' H5'' 119.7 120.0
O4' C4' C5' C3' 243.6 242.1
O4' C4' C5' H4' 120.1 121.0
C5' C4' O4' C1' 156.4 146.0
C3' C4' C5' H4' 236.5 238.8
C5' C4' C3' O3' 75.8 119.8
C5' C4' C3' C2' 194.9 238.5
C5' C4' C3' H3' 310.9 357.3
O5' C5' H5' C4' 239.1 240.1
O5' C5' H5' H5'' 119.5 120.1
C4' C5' H5' H5'' 240.5 240.0
H5' C5' C4' O4' 173.0 306.4
H5' C5' C4' C3' 289.4 64.3
H5' C5' C4' H4' 52.9 185.5
O5' C5' H5'' C4' 120.9 120.0
O5' C5' H5'' H5' 240.5 240.0
C4' C5' H5'' H5' 119.5 120.0
H5'' C5' C4' O4' 53.3 186.4
H5'' C5' C4' C3' 169.7 304.3
H5'' C5' C4' H4' 293.2 65.5
O4' C4' C5' H5' 173.0 306.4
O4' C4' C5' H5'' 53.3 186.4
C5' C4' O4' C3' 125.2 119.4
C5' C4' O4' H4' 240.4 239.0
C3' C4' O4' H4' 115.1 119.6
O4' C4' C3' O3' 196.5 239.3
O4' C4' C3' C2' 315.6 358.0
O4' C4' C3' H3' 71.6 116.8
C4' O4' C1' C2' 355.3 319.9
C4' O4' C1' N9 237.2 201.5
C4' O4' C1' H1' 114.6 78.4
C3' C4' C5' H5' 289.4 64.3
C3' C4' C5' H5'' 169.7 304.3
C5' C4' C3' O4' 239.3 240.6
C5' C4' C3' H4' 123.6 121.1
O4' C4' C3' H4' 244.3 240.5
C3' C4' O4' C1' 31.2 26.5
O3' C3' C4' C2' 240.9 241.3
O3' C3' C4' H3' 124.9 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 244.0 241.2
C4' C3' C2' O2' 286.5 220.9
C4' C3' C2' C1' 40.9 339.1
C4' C3' C2' H2' 158.8 97.3
H4' C4' C5' H5' 52.9 185.5
H4' C4' C5' H5'' 293.2 65.5
C5' C4' H4' O4' 120.6 121.0
C5' C4' H4' C3' 231.6 238.9
O4' C4' H4' C3' 111.0 118.0
H4' C4' O4' C1' 276.1 266.9
H4' C4' C3' O3' 312.2 358.8
H4' C4' C3' C2' 71.3 117.5
H4' C4' C3' H3' 187.3 236.3
C1' O4' C4' C3' 31.2 26.5
C1' O4' C4' H4' 276.1 266.9
C3' C2' C1' O4' 336.6 37.1
O2' C2' C1' O4' 95.2 155.2
O4' C1' C2' H2' 218.6 278.9
C2' C1' O4' N9 118.1 118.5
C2' C1' O4' H1' 240.7 241.5
N9 C1' O4' H1' 122.6 123.0
O4' C1' N9 C8 16.8 23.6
O4' C1' N9 C4 194.4 203.3
O3' C3' C4' H4' 312.2 358.8
C4' C3' O3' C2' 111.5 114.7
C4' C3' O3' H3' 235.8 237.5
C2' C3' O3' H3' 124.3 122.8
O3' C3' C2' O2' 45.2 339.6
O3' C3' C2' C1' 159.7 97.8
O3' C3' C2' H2' 277.6 216.0
C2' C3' C4' H4' 71.3 117.5
C4' C3' C2' O3' 241.2 241.4
C4' C3' C2' H3' 116.1 118.7
O4' C1' C2' C3' 336.6 37.1
O3' C3' C2' H3' 234.9 237.3
C2' C3' O3' HO3' 68.5 65.3
O2' C2' C3' C1' 245.6 241.8
O2' C2' C3' H2' 127.6 123.6
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 242.1 241.8
C3' C2' C1' N9 94.3 155.5
C3' C2' C1' H1' 216.2 278.6
H3' C3' C4' H4' 187.3 236.3
C4' C3' H3' O3' 125.1 122.5
C4' C3' H3' C2' 250.6 245.2
O3' C3' H3' C2' 125.5 122.7
H3' C3' O3' HO3' 304.2 302.5
H3' C3' C2' O2' 170.4 102.2
H3' C3' C2' C1' 284.8 220.4
H3' C3' C2' H2' 42.7 338.7
HO3' O3' C3' C2' 68.5 65.3
HO3' O3' C3' H3' 304.2 302.5
O4' C1' C2' O2' 95.2 155.2
O2' C2' C3' H3' 170.4 102.2
C3' C2' O2' C1' 111.0 112.7
C3' C2' O2' H2' 233.2 236.4
C1' C2' O2' H2' 122.2 123.7
O2' C2' C1' N9 212.9 273.7
O2' C2' C1' H1' 334.8 36.7
O4' C1' C2' N9 242.4 241.5
O4' C1' C2' H1' 120.4 118.5
C1' C2' C3' H3' 284.8 220.4
C3' C2' C1' O2' 241.4 241.8
C3' C2' C1' H2' 118.0 118.2
O2' C2' C1' H2' 236.6 236.4
C1' C2' O2' HO2' 69.0 185.8
N9 C1' C2' H1' 238.1 237.0
C2' C1' N9 C8 260.9 269.5
C2' C1' N9 C4 78.5 89.2
H2' C2' C3' H3' 42.7 338.7
C3' C2' H2' O2' 127.7 123.6
C3' C2' H2' C1' 247.9 247.3
O2' C2' H2' C1' 120.1 123.7
H2' C2' O2' HO2' 306.8 62.1
H2' C2' C1' N9 336.2 37.4
H2' C2' C1' H1' 98.2 160.4
HO2' O2' C2' C1' 69.0 185.8
HO2' O2' C2' H2' 306.8 62.1
O4' C1' N9 C2' 115.9 114.1
O4' C1' N9 H1' 237.1 237.0
N9 C1' C2' H2' 336.2 37.4
C2' C1' N9 H1' 121.2 123.0
C8 N9 C1' C4 182.4 180.3
C1' N9 C8 N7 176.9 180.0
C1' N9 C8 H8 356.9 359.9
C1' N9 C4 C5 182.9 179.8
C1' N9 C4 N3 2.1 0.8
O4' C1' H1' C2' 242.8 245.9
O4' C1' H1' N9 121.5 123.0
H1' C1' C2' H2' 98.2 160.4
C2' C1' H1' N9 238.8 237.1
H1' C1' N9 C8 139.7 146.6
H1' C1' N9 C4 317.3 326.2
C8 N9 C1' H1' 139.7 146.6
C1' N9 C8 C4 178.0 179.7
C8 N9 C4 C5 0.9 359.6
C8 N9 C4 N3 180.1 180.6
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.7 0.0
C4 N9 C1' H1' 317.3 326.2
C1' N9 C4 C8 182.0 180.3
C4 N9 C8 N7 359.0 0.3
C4 N9 C8 H8 178.9 180.2
N7 C5 C4 N9 359.5 0.4
C6 C5 C4 N9 179.7 180.2
C5 C4 N9 N3 180.8 179.0
C2 N3 C4 N9 181.2 179.5
N7 C8 N9 C4 359.0 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.6 180.0
C8 N7 C5 C4 359.9 359.7
H8 C8 N9 C4 178.9 180.2
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 180.7 180.1
N9 C4 C5 N7 359.5 0.4
C5 N7 C8 H8 180.7 180.1
C6 C5 N7 C4 179.7 180.3
N7 C5 C6 O6 359.9 0.0
N7 C5 C6 N1 179.7 180.0
N7 C5 C4 N3 180.3 179.6
N9 C4 C5 C6 179.7 180.2
N7 C5 C6 C4 180.3 179.7
C6 C5 C4 N3 0.5 359.4
O6 C6 C5 N1 180.2 180.0
C5 C6 N1 C2 0.1 0.0
C5 C6 N1 H1 180.1 180.0
N9 C4 C5 N3 179.2 180.8
N7 C5 C4 C6 179.8 180.2
C4 C5 C6 O6 179.6 180.3
C4 C5 C6 N1 359.4 0.3
C2 N3 C4 C5 0.3 0.6
O6 C6 C5 C4 179.6 180.3
C5 C6 O6 N1 179.7 180.0
O6 C6 N1 C2 179.9 180.0
O6 C6 N1 H1 359.9 360.0
N1 C6 C5 C4 359.4 0.3
C5 C6 N1 O6 180.2 180.0
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 N3 0.8 360.0
C6 N1 C2 H2 180.8 180.0
C6 N1 C2 H1 180.0 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 359.1 359.7
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N3 180.8 180.0
H1 N1 C2 H2 0.8 360.0
N9 C4 N3 C2 181.2 179.5
C5 C4 N3 C2 0.3 0.6
N3 C2 N1 H1 180.8 180.0
N1 C2 N3 H2 180.0 180.0
H2 C2 N1 H1 0.8 360.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 179.1 179.7
N9 C4 N3 C5 181.0 178.9
C4 N3 C2 H2 179.1 179.7