PDB Chemical Component HYP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HYP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.465 |
1.486 |
| N |
CD |
1.472 |
1.486 |
| N |
H |
1.000 |
1.009 |
| CA |
C |
1.516 |
1.507 |
| CA |
CB |
1.529 |
1.543 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.231 |
1.208 |
| C |
OXT |
1.327 |
1.343 |
| CB |
CG |
1.458 |
1.543 |
| CB |
HB2 |
1.100 |
1.089 |
| CB |
HB3 |
1.100 |
1.091 |
| CG |
CD |
1.505 |
1.543 |
| CG |
OD1 |
1.423 |
1.429 |
| CG |
HG |
1.100 |
1.090 |
| CD |
HD22 |
1.100 |
1.090 |
| CD |
HD23 |
1.100 |
1.090 |
| OD1 |
HD1 |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.966 |
Bond Angles for HYP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CD |
111.4 |
104.2 |
| CA |
N |
H |
108.8 |
111.0 |
| N |
CA |
C |
110.2 |
110.4 |
| N |
CA |
CB |
104.0 |
104.6 |
| N |
CA |
HA |
112.7 |
110.4 |
| CD |
N |
H |
108.8 |
111.0 |
| N |
CD |
CG |
102.7 |
104.6 |
| N |
CD |
HD22 |
111.8 |
110.4 |
| N |
CD |
HD23 |
113.2 |
110.4 |
| C |
CA |
CB |
110.1 |
110.4 |
| C |
CA |
HA |
107.0 |
110.3 |
| CA |
C |
O |
120.5 |
120.0 |
| CA |
C |
OXT |
116.4 |
120.0 |
| CB |
CA |
HA |
112.9 |
110.6 |
| CA |
CB |
CG |
105.3 |
105.0 |
| CA |
CB |
HB2 |
110.9 |
110.3 |
| CA |
CB |
HB3 |
111.8 |
110.3 |
| O |
C |
OXT |
123.1 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CG |
CB |
HB2 |
110.9 |
110.3 |
| CG |
CB |
HB3 |
111.8 |
110.3 |
| CB |
CG |
CD |
106.5 |
105.1 |
| CB |
CG |
OD1 |
108.9 |
110.3 |
| CB |
CG |
HG |
111.9 |
110.4 |
| HB2 |
CB |
HB3 |
106.3 |
110.4 |
| CD |
CG |
OD1 |
109.9 |
110.3 |
| CD |
CG |
HG |
110.9 |
110.3 |
| CG |
CD |
HD22 |
111.8 |
110.5 |
| CG |
CD |
HD23 |
113.2 |
110.5 |
| OD1 |
CG |
HG |
108.7 |
110.3 |
| CG |
OD1 |
HD1 |
109.5 |
114.0 |
| HD22 |
CD |
HD23 |
104.4 |
110.4 |
Torsion Angles for HYP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD |
N |
CA |
H |
240.0 |
240.4 |
| CA |
N |
CD |
CG |
16.9 |
320.5 |
| CA |
N |
CD |
HD22 |
136.9 |
79.3 |
| CA |
N |
CD |
HD23 |
254.5 |
201.7 |
| C |
CA |
N |
CB |
117.9 |
118.8 |
| C |
CA |
N |
HA |
240.5 |
237.7 |
| N |
CA |
C |
O |
330.9 |
341.4 |
| N |
CA |
C |
OXT |
151.9 |
161.4 |
| CB |
CA |
N |
HA |
122.6 |
119.0 |
| N |
CA |
CB |
CG |
339.4 |
336.1 |
| N |
CA |
CB |
HB2 |
99.5 |
95.0 |
| N |
CA |
CB |
HB3 |
217.9 |
217.3 |
| CA |
N |
CD |
H |
120.0 |
119.6 |
| CD |
N |
CA |
C |
119.7 |
158.3 |
| CD |
N |
CA |
CB |
1.8 |
39.5 |
| CD |
N |
CA |
HA |
239.1 |
280.5 |
| CB |
CG |
CD |
N |
330.1 |
23.9 |
| N |
CD |
CG |
OD1 |
87.9 |
142.8 |
| N |
CD |
CG |
HG |
208.0 |
264.9 |
| CG |
CD |
N |
HD22 |
240.0 |
241.2 |
| CG |
CD |
N |
HD23 |
122.4 |
118.8 |
| HD22 |
CD |
N |
HD23 |
242.5 |
237.6 |
| CA |
N |
H |
CD |
238.4 |
244.6 |
| H |
N |
CA |
C |
239.7 |
277.8 |
| H |
N |
CA |
CB |
121.8 |
159.1 |
| H |
N |
CA |
HA |
359.2 |
40.1 |
| H |
N |
CD |
CG |
256.9 |
201.0 |
| H |
N |
CD |
HD22 |
16.9 |
319.8 |
| H |
N |
CD |
HD23 |
134.4 |
82.1 |
| C |
CA |
N |
CD |
119.7 |
158.3 |
| C |
CA |
N |
H |
239.7 |
277.8 |
| N |
CA |
C |
CB |
245.9 |
244.8 |
| N |
CA |
C |
HA |
122.9 |
122.3 |
| CB |
CA |
C |
HA |
237.0 |
237.5 |
| C |
CA |
CB |
CG |
221.4 |
217.4 |
| C |
CA |
CB |
HB2 |
341.5 |
336.2 |
| C |
CA |
CB |
HB3 |
99.9 |
98.5 |
| O |
C |
CA |
OXT |
179.0 |
180.0 |
| CA |
C |
OXT |
HXT |
178.9 |
180.0 |
| CB |
CA |
N |
CD |
1.8 |
39.5 |
| CB |
CA |
N |
H |
121.8 |
159.1 |
| N |
CA |
CB |
C |
118.0 |
118.8 |
| N |
CA |
CB |
HA |
237.5 |
241.1 |
| C |
CA |
CB |
HA |
119.5 |
122.4 |
| CB |
CA |
C |
O |
85.0 |
96.6 |
| CB |
CA |
C |
OXT |
266.0 |
276.6 |
| CG |
CB |
CA |
HB2 |
240.0 |
241.1 |
| CG |
CB |
CA |
HB3 |
121.6 |
118.8 |
| CA |
CB |
CG |
CD |
31.7 |
360.0 |
| CA |
CB |
CG |
OD1 |
273.3 |
241.1 |
| CA |
CB |
CG |
HG |
153.1 |
118.9 |
| HB2 |
CB |
CA |
HB3 |
241.6 |
237.7 |
| HA |
CA |
N |
CD |
239.1 |
280.5 |
| HA |
CA |
N |
H |
359.2 |
40.1 |
| N |
CA |
HA |
C |
238.7 |
237.7 |
| N |
CA |
HA |
CB |
117.5 |
115.3 |
| C |
CA |
HA |
CB |
238.8 |
237.6 |
| HA |
CA |
C |
O |
208.0 |
219.1 |
| HA |
CA |
C |
OXT |
29.0 |
39.1 |
| HA |
CA |
CB |
CG |
102.0 |
95.0 |
| HA |
CA |
CB |
HB2 |
222.0 |
213.9 |
| HA |
CA |
CB |
HB3 |
340.4 |
336.2 |
| O |
C |
CA |
CB |
85.0 |
96.6 |
| O |
C |
CA |
HA |
208.0 |
219.1 |
| CA |
C |
O |
OXT |
181.1 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| OXT |
C |
CA |
CB |
266.0 |
276.6 |
| OXT |
C |
CA |
HA |
29.0 |
39.1 |
| CA |
C |
OXT |
O |
179.0 |
180.0 |
| N |
CD |
CG |
CB |
330.1 |
23.9 |
| CG |
CB |
CA |
HA |
102.0 |
95.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
118.9 |
| CA |
CB |
CG |
HB3 |
238.4 |
241.2 |
| HB2 |
CB |
CG |
HB3 |
118.4 |
122.3 |
| CD |
CG |
CB |
OD1 |
118.5 |
118.9 |
| CD |
CG |
CB |
HG |
238.6 |
241.1 |
| CB |
CG |
CD |
HD22 |
210.0 |
265.1 |
| CB |
CG |
CD |
HD23 |
92.5 |
142.6 |
| OD1 |
CG |
CB |
HG |
120.1 |
122.2 |
| CB |
CG |
OD1 |
HD1 |
112.6 |
180.0 |
| HB2 |
CB |
CA |
HA |
222.0 |
213.9 |
| CA |
CB |
HB2 |
CG |
243.4 |
244.4 |
| CA |
CB |
HB2 |
HB3 |
121.7 |
122.2 |
| CG |
CB |
HB2 |
HB3 |
238.3 |
237.8 |
| HB2 |
CB |
CG |
CD |
271.8 |
241.1 |
| HB2 |
CB |
CG |
OD1 |
153.3 |
122.2 |
| HB2 |
CB |
CG |
HG |
33.1 |
0.0 |
| HB3 |
CB |
CA |
HA |
340.4 |
336.2 |
| CA |
CB |
HB3 |
CG |
117.8 |
115.6 |
| CA |
CB |
HB3 |
HB2 |
238.9 |
237.8 |
| CG |
CB |
HB3 |
HB2 |
121.1 |
122.2 |
| HB3 |
CB |
CG |
CD |
153.3 |
118.8 |
| HB3 |
CB |
CG |
OD1 |
34.9 |
360.0 |
| HB3 |
CB |
CG |
HG |
274.7 |
237.8 |
| CG |
CD |
N |
H |
256.9 |
201.0 |
| N |
CD |
CG |
HD22 |
120.0 |
118.8 |
| N |
CD |
CG |
HD23 |
237.6 |
241.2 |
| CD |
CG |
CB |
HB2 |
271.8 |
241.1 |
| CD |
CG |
CB |
HB3 |
153.3 |
118.8 |
| CB |
CG |
CD |
OD1 |
242.2 |
241.1 |
| CB |
CG |
CD |
HG |
122.0 |
118.9 |
| OD1 |
CG |
CD |
HG |
239.8 |
237.8 |
| CD |
CG |
OD1 |
HD1 |
356.3 |
64.3 |
| HD22 |
CD |
CG |
HD23 |
117.5 |
122.5 |
| OD1 |
CG |
CB |
HB2 |
153.3 |
122.2 |
| OD1 |
CG |
CB |
HB3 |
34.9 |
360.0 |
| CB |
CG |
OD1 |
CD |
116.3 |
115.6 |
| CB |
CG |
OD1 |
HG |
237.9 |
237.8 |
| CD |
CG |
OD1 |
HG |
121.5 |
122.2 |
| OD1 |
CG |
CD |
HD22 |
327.8 |
24.0 |
| OD1 |
CG |
CD |
HD23 |
210.3 |
261.5 |
| HG |
CG |
CB |
HB2 |
33.1 |
0.0 |
| HG |
CG |
CB |
HB3 |
274.7 |
237.8 |
| CB |
CG |
HG |
CD |
241.2 |
244.3 |
| CB |
CG |
HG |
OD1 |
120.3 |
122.2 |
| CD |
CG |
HG |
OD1 |
239.1 |
237.8 |
| HG |
CG |
CD |
HD22 |
88.0 |
146.2 |
| HG |
CG |
CD |
HD23 |
330.5 |
23.7 |
| HG |
CG |
OD1 |
HD1 |
234.7 |
302.2 |
| HD22 |
CD |
N |
H |
16.9 |
319.8 |
| N |
CD |
HD22 |
CG |
245.5 |
244.8 |
| N |
CD |
HD22 |
HD23 |
122.7 |
122.3 |
| HD22 |
CD |
CG |
OD1 |
327.8 |
24.0 |
| HD22 |
CD |
CG |
HG |
88.0 |
146.2 |
| CG |
CD |
HD22 |
HD23 |
237.3 |
237.5 |
| HD23 |
CD |
N |
H |
134.4 |
82.1 |
| N |
CD |
HD23 |
CG |
116.4 |
115.2 |
| N |
CD |
HD23 |
HD22 |
238.2 |
237.7 |
| HD23 |
CD |
CG |
OD1 |
210.3 |
261.5 |
| HD23 |
CD |
CG |
HG |
330.5 |
23.7 |
| CG |
CD |
HD23 |
HD22 |
121.8 |
122.5 |
| HD1 |
OD1 |
CG |
HG |
234.7 |
302.2 |