PDB Chemical Component HYO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HYO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C09 C11 1.612 1.532
C09 C05 1.495 1.537
C10 C11 1.666 1.532
C10 C06 1.539 1.537
C11 O01 1.290 1.452
N04 C12 1.396 1.469
N04 C05 1.341 1.488
N04 C06 1.345 1.487
C05 C07 1.590 1.546
C06 C08 1.586 1.546
O02 C13 1.184 1.208
O01 C13 1.383 1.342
C19 C17 1.524 1.382
C19 C21 1.500 1.383
C13 C14 1.503 1.507
C17 C15 1.520 1.383
C07 C08 1.486 1.543
C21 C20 1.513 1.383
C15 C14 1.542 1.507
C15 C18 1.507 1.382
C14 C16 1.543 1.530
C16 O03 1.439 1.429
C20 C18 1.528 1.382
C10 H1 1.100 1.090
C10 H2 1.100 1.090
C17 H3 1.080 1.080
C20 H4 1.080 1.080
C21 H5 1.080 1.080
C05 H6 1.100 1.089
C06 H7 1.100 1.091
C07 H8 1.100 1.089
C07 H9 1.100 1.090
C08 H10 1.100 1.089
C08 H11 1.100 1.090
C09 H12 1.100 1.090
C09 H13 1.100 1.090
C11 H14 1.100 1.089
C12 H15 1.100 1.090
C12 H16 1.100 1.089
C12 H17 1.100 1.090
C14 H18 1.099 1.090
C16 H19 1.100 1.090
C16 H20 1.100 1.089
C18 H21 1.080 1.081
C19 H22 1.080 1.080
O03 H24 0.950 0.967

Bond Angles for HYO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C10 C11 C09 106.6 109.7
C09 C11 O01 100.4 109.4
C11 C09 H12 108.3 109.5
C11 C09 H13 108.3 109.6
C09 C11 H14 110.7 109.5
C09 C05 H6 109.4 112.6
C06 C10 C11 111.2 108.9
C10 C11 O01 112.1 109.4
C11 C10 H1 109.0 109.6
C11 C10 H2 109.0 109.6
C10 C11 H14 110.0 109.4
C10 C06 C08 111.3 107.8
C06 C10 H1 109.0 109.6
C06 C10 H2 109.0 109.5
C10 C06 H7 109.6 112.1
O01 C11 H14 116.2 109.4
N04 C12 H15 109.5 109.5
N04 C12 H16 109.5 109.4
N04 C12 H17 109.5 109.5
N04 C05 H6 111.8 112.2
N04 C06 H7 112.6 112.7
C05 C07 C08 101.7 104.8
C07 C05 H6 108.2 112.2
C05 C07 H8 111.4 110.4
C05 C07 H9 111.4 110.4
C06 C08 C07 103.1 104.9
C08 C06 H7 109.0 112.2
C06 C08 H10 111.0 110.4
C06 C08 H11 111.0 110.3
C19 C17 H3 119.6 120.0
C19 C21 H5 119.1 120.0
C13 C14 C15 107.4 109.5
C13 C14 C16 109.4 109.4
C13 C14 H18 111.4 109.5
C17 C15 C14 117.9 120.0
C17 C15 C18 121.5 120.0
C08 C07 H8 111.4 110.4
C08 C07 H9 111.4 110.3
C07 C08 H10 111.0 110.4
C07 C08 H11 111.0 110.4
C21 C20 C18 120.9 120.0
C21 C20 H4 119.5 119.9
C14 C15 C18 120.6 120.0
C15 C14 C16 106.8 109.5
C15 C14 H18 110.8 109.5
C15 C18 C20 117.3 120.0
C15 C18 H21 121.3 120.0
C14 C16 O03 107.8 109.5
C16 C14 H18 110.8 109.5
C14 C16 H19 109.9 109.4
C14 C16 H20 109.9 109.5
O03 C16 H19 109.9 109.4
O03 C16 H20 109.9 109.5
C16 O03 H24 109.5 114.0
C18 C20 H4 119.5 120.1
C20 C18 H21 121.3 120.0
H1 C10 H2 109.5 109.7
H8 C07 H9 109.4 110.5
H10 C08 H11 109.5 110.4
H12 C09 H13 109.4 109.6
H15 C12 H16 109.5 109.5
H15 C12 H17 109.5 109.5
H16 C12 H17 109.5 109.5
H19 C16 H20 109.5 109.5

Torsion Angles for HYO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C11 C09 C05 H6 178.8 188.0
C06 C10 C11 C09 33.6 54.0
C10 C11 C09 O01 243.0 240.0
C09 C11 C10 H1 153.9 294.2
C09 C11 C10 H2 273.3 173.8
C10 C11 C09 H14 119.7 120.1
O01 C11 C09 H14 236.7 240.1
H12 C09 C11 H13 241.4 120.3
C10 C11 C09 C05 326.4 306.0
N04 C05 C09 H6 235.8 236.1
C07 C05 C09 H6 119.9 124.4
C09 C05 C07 H8 212.0 207.4
C09 C05 C07 H9 334.5 329.8
C09 C11 C10 O01 108.9 120.0
C10 C11 C09 H12 87.1 186.1
C10 C11 C09 H13 205.8 65.8
C09 C11 C10 H14 239.9 239.9
C11 C10 C06 C08 59.6 47.6
C06 C10 C11 H1 239.7 119.8
C06 C10 C11 H2 120.3 240.2
C11 C10 C06 H7 180.3 171.6
O01 C11 C10 H14 131.0 119.9
H1 C10 C11 H2 240.5 120.4
C06 C10 C11 O01 284.7 294.0
C11 C10 C06 H1 120.3 240.2
C11 C10 C06 H2 239.7 119.8
C06 C10 C11 H14 153.7 174.1
N04 C06 C10 H7 124.6 124.2
C10 C06 C08 C07 264.1 271.4
C08 C06 C10 H7 239.3 236.0
C10 C06 C08 H10 23.1 30.3
C10 C06 C08 H11 145.2 152.6
H1 C10 C06 H2 119.5 239.7
C10 C11 O01 C09 112.8 120.2
O01 C11 C09 H12 204.1 306.2
O01 C11 C09 H13 322.7 185.9
C09 C11 O01 H14 119.4 119.9
O01 C11 C10 H1 44.9 174.1
O01 C11 C10 H2 164.4 53.8
C10 C11 O01 H14 232.3 240.1
C12 N04 C05 H6 33.1 44.2
C12 N04 C06 H7 323.0 315.5
H15 C12 N04 H16 240.0 240.0
H15 C12 N04 H17 120.0 120.0
H16 C12 N04 H17 240.0 240.0
C09 C05 N04 H6 122.9 124.1
C07 C05 N04 H6 243.6 238.3
N04 C05 C07 H8 91.6 93.7
N04 C05 C07 H9 214.1 216.0
N04 C06 C10 H1 184.7 55.7
N04 C06 C10 H2 65.2 176.0
C10 C06 N04 H7 237.1 236.1
C06 N04 C05 H6 161.9 163.3
C08 C06 N04 H7 117.8 122.0
N04 C06 C08 H10 141.9 144.1
N04 C06 C08 H11 263.9 266.3
C09 C05 C07 H6 239.4 235.4
N04 C05 C07 H6 118.9 121.7
C06 C08 C07 C05 2.3 360.0
C08 C07 C05 H8 241.2 241.2
C08 C07 C05 H9 118.7 118.8
C05 C07 C08 H10 243.4 241.1
C05 C07 C08 H11 121.3 118.8
H8 C07 C05 H9 237.5 237.6
C08 C06 C10 C11 59.6 47.6
C08 C06 C10 H1 299.3 167.4
C08 C06 C10 H2 179.9 287.8
C10 C06 C08 H7 121.0 124.0
N04 C06 C08 H7 239.8 237.7
C05 C07 C08 C06 2.3 360.0
C06 C08 C07 H8 243.6 241.2
C06 C08 C07 H9 121.1 118.8
C07 C08 C06 H10 241.0 241.1
C07 C08 C06 H11 119.0 118.8
H10 C08 C06 H11 237.9 237.7
O02 C13 C14 H18 147.1 239.9
C10 C11 O01 C13 279.0 210.0
O01 C13 C14 H18 327.4 60.0
C21 C19 C17 H3 179.3 180.0
C19 C21 C20 H4 176.9 179.7
C17 C15 C14 C13 44.8 59.7
C13 C14 C15 C18 223.1 240.0
C15 C14 C13 C16 244.4 240.0
C15 C14 C13 H18 121.6 120.0
C13 C14 C16 O03 188.7 65.0
C16 C14 C13 H18 237.1 240.0
C13 C14 C16 H19 308.5 185.0
C13 C14 C16 H20 69.0 304.9
C13 C14 C15 C17 44.8 59.7
C14 C15 C17 C18 178.2 180.4
C17 C15 C14 C16 287.6 299.7
C17 C15 C14 H18 166.7 179.7
C17 C15 C18 C20 357.8 0.3
C17 C15 C18 H21 177.8 180.3
C08 C07 C05 H6 213.9 213.1
C05 C07 C08 H8 118.8 118.8
C05 C07 C08 H9 241.3 241.2
C07 C08 C06 H7 143.1 147.5
C06 C08 C07 H10 119.0 118.9
C06 C08 C07 H11 241.1 241.2
H8 C07 C08 H9 122.5 122.4
H10 C08 C07 H11 122.1 122.3
C15 C18 C20 C21 3.2 359.9
C18 C20 C21 H4 180.0 180.0
C21 C20 C18 H21 183.3 180.0
C13 C14 C15 C16 117.2 120.0
C13 C14 C15 H18 238.1 240.0
C17 C15 C14 C18 181.7 179.6
C14 C15 C18 C20 179.6 180.0
C14 C15 C18 H21 359.6 359.9
C15 C14 C16 O03 304.7 185.0
C16 C14 C15 H18 120.8 120.0
C15 C14 C16 H19 64.4 305.0
C15 C14 C16 H20 184.9 65.0
C17 C15 C18 C14 178.2 180.4
C21 C20 C18 C15 3.2 359.9
C18 C15 C14 C16 105.8 120.1
C18 C15 C14 H18 345.0 0.1
C15 C18 C20 H4 183.2 179.9
C20 C18 C15 H21 180.0 180.1
C13 C14 C16 C15 244.1 240.0
C13 C14 C16 H18 123.2 120.0
C16 C14 C15 C18 105.8 120.1
C15 C14 C16 H18 239.1 240.0
O03 C16 C14 H19 240.2 240.0
O03 C16 C14 H20 119.7 120.1
C14 C16 O03 H24 180.0 180.0
H19 C16 C14 H20 239.5 240.0
O03 C16 C14 H18 65.5 305.0
C14 C16 O03 H19 119.8 120.0
C14 C16 O03 H20 240.3 240.0
H19 C16 O03 H20 120.5 120.0
C21 C20 C18 H4 180.0 180.0
C15 C18 C20 H21 180.0 179.9
H1 C10 C11 C09 153.9 294.2
C06 C10 H1 C11 121.6 240.6
H1 C10 C11 O01 44.9 174.1
C11 C10 H1 H2 119.2 239.7
H1 C10 C11 H14 274.0 54.3
H1 C10 C06 C08 299.3 167.4
C06 C10 H1 H2 240.8 120.3
H1 C10 C06 H7 60.0 291.5
H2 C10 C11 C09 273.3 173.8
C06 C10 H2 C11 238.4 119.4
H2 C10 C11 O01 164.4 53.8
C11 C10 H2 H1 240.8 120.3
H2 C10 C11 H14 33.4 293.9
H2 C10 C06 C08 179.9 287.8
C06 C10 H2 H1 119.2 239.7
H2 C10 C06 H7 300.6 51.8
H3 C17 C15 C14 359.2 0.0
H3 C17 C15 C18 181.0 179.7
C21 C20 H4 C18 180.0 180.0
H4 C20 C18 H21 3.3 0.0
H5 C21 C20 C18 176.9 180.0
H5 C21 C20 H4 356.9 0.0
H6 C05 C07 C08 213.9 213.1
H6 C05 C07 H8 332.7 331.9
H6 C05 C07 H9 95.2 94.3
H7 C06 C10 C11 180.3 171.6
C10 C06 H7 C08 238.0 238.5
H7 C06 C10 H1 60.0 291.5
H7 C06 C10 H2 300.6 51.8
H7 C06 C08 C07 143.1 147.5
H7 C06 C08 H10 262.1 266.4
H7 C06 C08 H11 24.1 28.6
C05 C07 H8 C08 247.2 244.6
H8 C07 C05 H6 332.7 331.9
C05 C07 H8 H9 123.6 122.3
C08 C07 H8 H9 236.4 237.7
H8 C07 C08 H10 124.6 122.3
H8 C07 C08 H11 2.5 0.0
C05 C07 H9 C08 112.8 115.4
H9 C07 C05 H6 95.2 94.3
C05 C07 H9 H8 236.4 237.7
C08 C07 H9 H8 123.6 122.3
H9 C07 C08 H10 2.1 360.0
H9 C07 C08 H11 240.0 237.6
C06 C08 H10 C07 245.9 244.5
H10 C08 C06 H7 262.1 266.4
C06 C08 H10 H11 122.9 122.3
H10 C08 C07 H8 124.6 122.3
H10 C08 C07 H9 2.1 360.0
C07 C08 H10 H11 237.0 237.7
C06 C08 H11 C07 114.1 115.4
H11 C08 C06 H7 24.1 28.6
C06 C08 H11 H10 237.0 237.7
H11 C08 C07 H8 2.5 0.0
H11 C08 C07 H9 240.0 237.6
C07 C08 H11 H10 123.0 122.3
H12 C09 C11 O01 204.1 306.2
C11 C09 H12 H13 117.9 239.7
H12 C09 C11 H14 327.5 66.1
H12 C09 C05 H6 58.1 307.9
H13 C09 C11 O01 322.7 185.9
C11 C09 H13 H12 242.1 120.2
H13 C09 C11 H14 86.1 305.8
H13 C09 C05 H6 299.4 68.2
C10 C11 H14 C09 242.4 239.7
C09 C11 H14 O01 246.3 240.1
H14 C11 C09 H12 327.5 66.1
H14 C11 C09 H13 86.1 305.8
C10 C11 H14 O01 128.7 119.9
H14 C11 C10 H1 274.0 54.3
H14 C11 C10 H2 33.4 293.9
N04 C12 H15 H16 120.0 120.0
N04 C12 H15 H17 240.0 240.0
H16 C12 H15 H17 120.0 120.0
N04 C12 H16 H15 240.0 240.0
N04 C12 H16 H17 120.0 120.0
H15 C12 H16 H17 240.0 240.0
N04 C12 H17 H15 120.0 120.0
N04 C12 H17 H16 240.0 240.0
H15 C12 H17 H16 120.0 120.0
C13 C14 H18 C15 119.5 120.0
C13 C14 H18 C16 238.0 240.0
H18 C14 C15 C18 345.0 0.1
C15 C14 H18 C16 118.5 120.0
H18 C14 C16 O03 65.5 305.0
H18 C14 C16 H19 185.3 65.0
H18 C14 C16 H20 305.8 185.0
C14 C16 H19 O03 241.5 240.0
H19 C16 C14 H18 185.3 65.0
C14 C16 H19 H20 120.8 120.0
O03 C16 H19 H20 239.2 240.0
H19 C16 O03 H24 60.3 60.0
C14 C16 H20 O03 118.4 120.1
H20 C16 C14 H18 305.8 185.0
C14 C16 H20 H19 239.2 240.1
O03 C16 H20 H19 120.8 120.0
H20 C16 O03 H24 299.8 300.0
C15 C18 H21 C20 180.0 180.1
H21 C18 C20 H4 3.3 0.0
H22 C19 C17 H3 359.3 0.0
H22 C19 C21 H5 1.8 360.0
H24 O03 C16 H19 60.3 60.0
H24 O03 C16 H20 299.8 300.0