PDB Chemical Component HW9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HW9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C27 |
C24 |
1.515 |
1.507 |
| C24 |
C25 |
1.383 |
1.387 |
| C24 |
C23 |
1.389 |
1.388 |
| C25 |
C26 |
1.403 |
1.383 |
| C23 |
C22 |
1.386 |
1.381 |
| C26 |
C14 |
1.529 |
1.507 |
| C26 |
N21 |
1.364 |
1.319 |
| C22 |
N21 |
1.336 |
1.318 |
| C14 |
C13 |
1.514 |
1.529 |
| C12 |
C13 |
1.516 |
1.529 |
| C12 |
C11 |
1.505 |
1.530 |
| C11 |
C10 |
1.514 |
1.530 |
| C10 |
O09 |
1.421 |
1.429 |
| O09 |
C3' |
1.439 |
1.429 |
| C3' |
C4' |
1.515 |
1.542 |
| C3' |
C2' |
1.532 |
1.544 |
| C08 |
C4' |
1.522 |
1.531 |
| C08 |
C06 |
1.495 |
1.507 |
| C4' |
C5' |
1.530 |
1.544 |
| C06 |
N01 |
1.360 |
1.320 |
| C06 |
C05 |
1.387 |
1.380 |
| N01 |
C02 |
1.351 |
1.324 |
| C2' |
N1' |
1.457 |
1.486 |
| C05 |
C04 |
1.385 |
1.389 |
| C02 |
N02 |
1.353 |
1.389 |
| C02 |
C03 |
1.415 |
1.391 |
| C04 |
C03 |
1.416 |
1.383 |
| C04 |
C07 |
1.515 |
1.507 |
| C5' |
N1' |
1.458 |
1.485 |
| N02 |
H1 |
1.000 |
0.970 |
| N02 |
H2 |
1.000 |
0.970 |
| C03 |
H3 |
1.080 |
1.080 |
| C05 |
H4 |
1.080 |
1.080 |
| C07 |
H5 |
1.100 |
1.091 |
| C07 |
H6 |
1.100 |
1.090 |
| C07 |
H7 |
1.099 |
1.089 |
| C08 |
H8 |
1.100 |
1.090 |
| C08 |
H9 |
1.100 |
1.089 |
| C4' |
H10 |
1.100 |
1.090 |
| C3' |
H11 |
1.100 |
1.090 |
| C2' |
H12 |
1.100 |
1.090 |
| C2' |
H13 |
1.100 |
1.090 |
| N1' |
H14 |
1.000 |
1.009 |
| C5' |
H16 |
1.100 |
1.090 |
| C5' |
H17 |
1.100 |
1.091 |
| C10 |
H18 |
1.100 |
1.090 |
| C10 |
H19 |
1.100 |
1.090 |
| C11 |
H20 |
1.100 |
1.090 |
| C11 |
H21 |
1.100 |
1.090 |
| C12 |
H22 |
1.100 |
1.091 |
| C12 |
H23 |
1.100 |
1.090 |
| C13 |
H24 |
1.100 |
1.090 |
| C13 |
H25 |
1.100 |
1.090 |
| C14 |
H26 |
1.100 |
1.090 |
| C14 |
H27 |
1.100 |
1.090 |
| C22 |
H28 |
1.080 |
1.081 |
| C23 |
H29 |
1.080 |
1.079 |
| C25 |
H30 |
1.080 |
1.079 |
| C27 |
H31 |
1.100 |
1.090 |
| C27 |
H32 |
1.100 |
1.091 |
| C27 |
H33 |
1.100 |
1.090 |
Bond Angles for HW9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C24 |
C25 |
H30 |
121.1 |
120.4 |
| C24 |
C23 |
H29 |
119.5 |
120.4 |
| C23 |
C22 |
H28 |
120.6 |
119.6 |
| C26 |
C14 |
H26 |
107.7 |
109.4 |
| C26 |
C14 |
H27 |
107.7 |
109.4 |
| C14 |
C13 |
H24 |
111.0 |
109.5 |
| C14 |
C13 |
H25 |
111.0 |
109.5 |
| C13 |
C12 |
H22 |
109.4 |
109.5 |
| C13 |
C12 |
H23 |
109.4 |
109.5 |
| C12 |
C13 |
H24 |
111.0 |
109.5 |
| C12 |
C13 |
H25 |
111.0 |
109.5 |
| C12 |
C11 |
H20 |
109.7 |
109.4 |
| C12 |
C11 |
H21 |
109.7 |
109.5 |
| C11 |
C10 |
H18 |
109.9 |
109.5 |
| C11 |
C10 |
H19 |
109.9 |
109.5 |
| O09 |
C3' |
H11 |
111.7 |
110.4 |
| C3' |
C4' |
C5' |
103.3 |
105.1 |
| C3' |
C4' |
H10 |
109.2 |
110.5 |
| C3' |
C2' |
N1' |
102.5 |
104.6 |
| C2' |
C3' |
H11 |
110.3 |
110.3 |
| C3' |
C2' |
H12 |
111.2 |
110.4 |
| C3' |
C2' |
H13 |
111.2 |
110.4 |
| C08 |
C4' |
C5' |
114.5 |
110.3 |
| C4' |
C08 |
H8 |
108.9 |
109.4 |
| C4' |
C08 |
H9 |
108.9 |
109.5 |
| C08 |
C4' |
H10 |
109.1 |
110.3 |
| C4' |
C5' |
N1' |
102.6 |
104.6 |
| C5' |
C4' |
H10 |
109.0 |
110.3 |
| C4' |
C5' |
H16 |
111.1 |
110.4 |
| C4' |
C5' |
H17 |
111.1 |
110.4 |
| C06 |
C05 |
H4 |
120.8 |
120.3 |
| N1' |
C2' |
H12 |
111.2 |
110.4 |
| N1' |
C2' |
H13 |
111.2 |
110.4 |
| C2' |
N1' |
H14 |
108.5 |
111.0 |
| C05 |
C04 |
C07 |
117.1 |
120.7 |
| C02 |
N02 |
H1 |
109.5 |
120.0 |
| C02 |
N02 |
H2 |
109.4 |
120.0 |
| C02 |
C03 |
H3 |
119.9 |
120.5 |
| C04 |
C03 |
H3 |
119.9 |
120.4 |
| C04 |
C07 |
H5 |
109.5 |
109.5 |
| C04 |
C07 |
H6 |
109.5 |
109.5 |
| C04 |
C07 |
H7 |
109.5 |
109.5 |
| C5' |
N1' |
H14 |
108.4 |
111.0 |
| H1 |
N02 |
H2 |
109.5 |
120.0 |
| H5 |
C07 |
H6 |
109.5 |
109.4 |
| H5 |
C07 |
H7 |
109.5 |
109.5 |
| H6 |
C07 |
H7 |
109.5 |
109.5 |
| H8 |
C08 |
H9 |
109.5 |
109.5 |
| H12 |
C2' |
H13 |
109.5 |
110.5 |
| H16 |
C5' |
H17 |
109.5 |
110.4 |
| H18 |
C10 |
H19 |
109.5 |
109.5 |
| H20 |
C11 |
H21 |
109.5 |
109.5 |
| H22 |
C12 |
H23 |
109.5 |
109.4 |
| H24 |
C13 |
H25 |
109.5 |
109.5 |
| H26 |
C14 |
H27 |
109.5 |
109.5 |
| H31 |
C27 |
H32 |
109.4 |
109.4 |
| H31 |
C27 |
H33 |
109.5 |
109.5 |
| H32 |
C27 |
H33 |
109.5 |
109.5 |
Torsion Angles for HW9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C27 |
C24 |
C25 |
H30 |
359.6 |
359.5 |
| C27 |
C24 |
C23 |
H29 |
0.9 |
0.3 |
| C25 |
C24 |
C23 |
H29 |
178.6 |
179.8 |
| C24 |
C23 |
C22 |
H28 |
180.5 |
180.0 |
| C25 |
C26 |
C14 |
H26 |
65.1 |
4.7 |
| C25 |
C26 |
C14 |
H27 |
183.0 |
244.7 |
| C26 |
C14 |
C13 |
H24 |
269.9 |
60.0 |
| C26 |
C14 |
C13 |
H25 |
32.0 |
300.0 |
| H26 |
C14 |
C26 |
H27 |
242.1 |
120.0 |
| N21 |
C26 |
C14 |
H26 |
248.2 |
185.0 |
| N21 |
C26 |
C14 |
H27 |
6.2 |
65.1 |
| C14 |
C13 |
C12 |
H22 |
297.4 |
60.0 |
| C14 |
C13 |
C12 |
H23 |
57.2 |
300.0 |
| C12 |
C13 |
C14 |
H24 |
241.0 |
120.0 |
| C12 |
C13 |
C14 |
H25 |
119.0 |
240.0 |
| H24 |
C13 |
C14 |
H25 |
238.0 |
120.0 |
| C14 |
C13 |
C12 |
H24 |
119.0 |
240.0 |
| C14 |
C13 |
C12 |
H25 |
241.0 |
120.0 |
| C13 |
C12 |
C11 |
H20 |
353.5 |
60.0 |
| C13 |
C12 |
C11 |
H21 |
113.7 |
300.0 |
| H22 |
C12 |
C13 |
H23 |
240.1 |
120.0 |
| H24 |
C13 |
C12 |
H25 |
122.0 |
240.0 |
| C12 |
C11 |
C10 |
H18 |
273.6 |
60.0 |
| C12 |
C11 |
C10 |
H19 |
34.2 |
300.0 |
| H20 |
C11 |
C12 |
H21 |
239.7 |
120.0 |
| H18 |
C10 |
C11 |
H19 |
239.4 |
120.1 |
| C10 |
O09 |
C3' |
H11 |
315.5 |
332.2 |
| O09 |
C3' |
C4' |
H10 |
163.1 |
122.2 |
| C2' |
C3' |
O09 |
H11 |
124.4 |
122.2 |
| O09 |
C3' |
C2' |
H12 |
205.6 |
261.5 |
| O09 |
C3' |
C2' |
H13 |
327.8 |
24.0 |
| C08 |
C4' |
C3' |
C5' |
123.4 |
118.9 |
| C3' |
C4' |
C08 |
H8 |
300.3 |
57.9 |
| C3' |
C4' |
C08 |
H9 |
59.6 |
297.9 |
| C08 |
C4' |
C3' |
H10 |
239.3 |
237.8 |
| C3' |
C4' |
C5' |
N1' |
328.7 |
336.2 |
| C5' |
C4' |
C3' |
H10 |
115.9 |
119.0 |
| C3' |
C4' |
C5' |
H16 |
87.6 |
94.9 |
| C3' |
C4' |
C5' |
H17 |
209.8 |
217.3 |
| O09 |
C3' |
C2' |
H11 |
234.8 |
237.8 |
| C2' |
C3' |
C4' |
C5' |
38.2 |
0.0 |
| C2' |
C3' |
C4' |
H10 |
282.4 |
241.0 |
| N1' |
C2' |
C3' |
H12 |
241.1 |
241.2 |
| N1' |
C2' |
C3' |
H13 |
118.9 |
118.8 |
| C3' |
C2' |
N1' |
H14 |
130.8 |
80.1 |
| H12 |
C2' |
C3' |
H13 |
237.8 |
237.5 |
| C3' |
C4' |
C08 |
C5' |
243.2 |
244.4 |
| C3' |
C4' |
C08 |
H10 |
120.7 |
122.3 |
| C08 |
C4' |
C5' |
N1' |
207.2 |
217.3 |
| C5' |
C4' |
C08 |
H10 |
237.6 |
237.9 |
| C08 |
C4' |
C5' |
H16 |
326.1 |
336.0 |
| C08 |
C4' |
C5' |
H17 |
88.3 |
98.4 |
| H8 |
C08 |
C4' |
H9 |
240.7 |
120.0 |
| C08 |
C06 |
C05 |
H4 |
0.2 |
0.3 |
| C3' |
C4' |
C5' |
H10 |
244.0 |
240.9 |
| C5' |
C4' |
C08 |
H8 |
57.1 |
173.6 |
| C5' |
C4' |
C08 |
H9 |
176.5 |
53.6 |
| C08 |
C4' |
C5' |
H10 |
122.5 |
122.0 |
| C4' |
C5' |
N1' |
H14 |
252.6 |
279.9 |
| H16 |
C5' |
C4' |
H17 |
237.8 |
237.6 |
| N01 |
C06 |
C05 |
H4 |
179.9 |
179.7 |
| N01 |
C02 |
N02 |
H1 |
360.0 |
179.7 |
| N01 |
C02 |
N02 |
H2 |
120.0 |
359.4 |
| N01 |
C02 |
C03 |
H3 |
180.3 |
180.2 |
| N1' |
C2' |
C3' |
H11 |
211.9 |
264.9 |
| C3' |
C2' |
N1' |
H12 |
118.9 |
118.8 |
| C3' |
C2' |
N1' |
H13 |
241.1 |
241.2 |
| C4' |
C5' |
N1' |
C2' |
13.2 |
39.4 |
| C5' |
N1' |
C2' |
H14 |
239.5 |
240.5 |
| H12 |
C2' |
N1' |
H13 |
122.2 |
122.4 |
| C05 |
C04 |
C03 |
H3 |
180.3 |
180.0 |
| C05 |
C04 |
C07 |
H5 |
89.9 |
270.0 |
| C05 |
C04 |
C07 |
H6 |
209.9 |
29.9 |
| C05 |
C04 |
C07 |
H7 |
329.9 |
150.0 |
| H1 |
N02 |
C02 |
H2 |
240.0 |
180.3 |
| C03 |
C02 |
N02 |
H1 |
181.1 |
0.0 |
| C03 |
C02 |
N02 |
H2 |
301.1 |
179.7 |
| C04 |
C03 |
C02 |
H3 |
180.0 |
180.0 |
| C02 |
C03 |
C04 |
H3 |
180.0 |
180.0 |
| C07 |
C04 |
C03 |
H3 |
0.1 |
360.0 |
| H5 |
C07 |
C04 |
H6 |
240.0 |
240.1 |
| H5 |
C07 |
C04 |
H7 |
120.0 |
120.0 |
| H6 |
C07 |
C04 |
H7 |
240.0 |
239.9 |
| N1' |
C5' |
C4' |
H10 |
84.7 |
95.2 |
| C4' |
C5' |
N1' |
H16 |
118.9 |
118.8 |
| C4' |
C5' |
N1' |
H17 |
241.1 |
241.2 |
| C5' |
N1' |
C2' |
H12 |
251.4 |
201.8 |
| C5' |
N1' |
C2' |
H13 |
129.1 |
79.3 |
| C2' |
N1' |
C5' |
H14 |
120.6 |
119.5 |
| C02 |
N02 |
H1 |
H2 |
120.0 |
179.7 |
| C02 |
N02 |
H2 |
H1 |
240.0 |
180.3 |
| H4 |
C05 |
C04 |
C07 |
359.8 |
0.0 |
| C04 |
C07 |
H5 |
H6 |
120.0 |
120.0 |
| C04 |
C07 |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
C07 |
H5 |
H7 |
120.0 |
119.9 |
| C04 |
C07 |
H6 |
H5 |
240.0 |
240.0 |
| C04 |
C07 |
H6 |
H7 |
120.0 |
120.1 |
| H5 |
C07 |
H6 |
H7 |
240.0 |
240.1 |
| C04 |
C07 |
H7 |
H5 |
120.0 |
120.0 |
| C04 |
C07 |
H7 |
H6 |
240.0 |
239.9 |
| H5 |
C07 |
H7 |
H6 |
120.0 |
119.9 |
| H8 |
C08 |
C4' |
C5' |
57.1 |
173.6 |
| C4' |
C08 |
H8 |
H9 |
118.9 |
240.0 |
| H8 |
C08 |
C4' |
H10 |
179.6 |
295.6 |
| H9 |
C08 |
C4' |
C5' |
176.5 |
53.6 |
| C4' |
C08 |
H9 |
H8 |
241.1 |
120.0 |
| H9 |
C08 |
C4' |
H10 |
298.9 |
175.6 |
| C3' |
C4' |
H10 |
C5' |
112.1 |
115.7 |
| C08 |
C4' |
H10 |
C5' |
234.4 |
237.9 |
| H10 |
C4' |
C08 |
H8 |
179.6 |
295.6 |
| H10 |
C4' |
C08 |
H9 |
298.9 |
175.6 |
| H10 |
C4' |
C5' |
N1' |
84.7 |
95.2 |
| H10 |
C4' |
C5' |
H16 |
203.6 |
214.0 |
| H10 |
C4' |
C5' |
H17 |
325.8 |
336.4 |
| H11 |
C3' |
C4' |
C5' |
156.4 |
118.9 |
| H11 |
C3' |
C4' |
H10 |
40.6 |
359.9 |
| H11 |
C3' |
C2' |
N1' |
211.9 |
264.9 |
| H11 |
C3' |
C2' |
H12 |
330.7 |
23.7 |
| H11 |
C3' |
C2' |
H13 |
93.0 |
146.2 |
| C3' |
C2' |
H12 |
N1' |
246.4 |
244.8 |
| H12 |
C2' |
C3' |
H11 |
330.7 |
23.7 |
| C3' |
C2' |
H12 |
H13 |
123.2 |
122.4 |
| N1' |
C2' |
H12 |
H13 |
236.8 |
237.6 |
| H12 |
C2' |
N1' |
H14 |
11.9 |
321.3 |
| C3' |
C2' |
H13 |
N1' |
113.6 |
115.2 |
| H13 |
C2' |
C3' |
H11 |
93.0 |
146.2 |
| C3' |
C2' |
H13 |
H12 |
236.8 |
237.6 |
| N1' |
C2' |
H13 |
H12 |
123.2 |
122.4 |
| H13 |
C2' |
N1' |
H14 |
249.7 |
198.9 |
| H14 |
N1' |
C2' |
H12 |
11.9 |
321.3 |
| H14 |
N1' |
C2' |
H13 |
249.7 |
198.9 |
| C4' |
C5' |
H16 |
N1' |
246.4 |
244.8 |
| H16 |
C5' |
C4' |
H10 |
203.6 |
214.0 |
| C4' |
C5' |
H16 |
H17 |
123.2 |
122.4 |
| H16 |
C5' |
N1' |
H14 |
133.7 |
161.1 |
| C4' |
C5' |
H17 |
N1' |
113.6 |
115.2 |
| H17 |
C5' |
C4' |
H10 |
325.8 |
336.4 |
| C4' |
C5' |
H17 |
H16 |
236.8 |
237.6 |
| H17 |
C5' |
N1' |
H14 |
11.5 |
38.8 |
| C11 |
C10 |
H18 |
H19 |
120.9 |
240.0 |
| C11 |
C10 |
H19 |
H18 |
239.1 |
120.0 |
| C12 |
C11 |
H20 |
H21 |
120.4 |
240.0 |
| H20 |
C11 |
C10 |
H18 |
153.7 |
180.0 |
| H20 |
C11 |
C10 |
H19 |
274.3 |
59.9 |
| C12 |
C11 |
H21 |
H20 |
239.6 |
120.0 |
| H21 |
C11 |
C10 |
H18 |
33.5 |
300.1 |
| H21 |
C11 |
C10 |
H19 |
154.1 |
180.0 |
| C13 |
C12 |
H22 |
H23 |
119.8 |
240.0 |
| H22 |
C12 |
C13 |
H24 |
178.4 |
180.0 |
| H22 |
C12 |
C13 |
H25 |
56.3 |
300.0 |
| H22 |
C12 |
C11 |
H20 |
233.4 |
180.0 |
| H22 |
C12 |
C11 |
H21 |
353.7 |
60.0 |
| C13 |
C12 |
H23 |
H22 |
240.2 |
120.0 |
| H23 |
C12 |
C13 |
H24 |
298.2 |
60.0 |
| H23 |
C12 |
C13 |
H25 |
176.2 |
180.0 |
| H23 |
C12 |
C11 |
H20 |
113.6 |
300.0 |
| H23 |
C12 |
C11 |
H21 |
233.8 |
179.9 |
| C14 |
C13 |
H24 |
H25 |
122.9 |
240.0 |
| H24 |
C13 |
C12 |
H22 |
178.4 |
180.0 |
| H24 |
C13 |
C12 |
H23 |
298.2 |
60.0 |
| C12 |
C13 |
H24 |
H25 |
237.1 |
120.0 |
| C14 |
C13 |
H25 |
H24 |
237.1 |
120.0 |
| H25 |
C13 |
C12 |
H22 |
56.3 |
300.0 |
| H25 |
C13 |
C12 |
H23 |
176.2 |
180.0 |
| C12 |
C13 |
H25 |
H24 |
122.9 |
240.0 |
| C26 |
C14 |
H26 |
H27 |
116.8 |
240.1 |
| H26 |
C14 |
C13 |
H24 |
148.9 |
180.0 |
| H26 |
C14 |
C13 |
H25 |
271.0 |
60.0 |
| C26 |
C14 |
H27 |
H26 |
243.2 |
119.9 |
| H27 |
C14 |
C13 |
H24 |
31.0 |
300.0 |
| H27 |
C14 |
C13 |
H25 |
153.0 |
180.1 |
| H29 |
C23 |
C22 |
H28 |
0.5 |
0.0 |
| H32 |
C27 |
H31 |
H33 |
120.0 |
120.0 |
| H31 |
C27 |
H32 |
H33 |
240.0 |
240.0 |
| H31 |
C27 |
H33 |
H32 |
120.0 |
120.0 |