PDB Chemical Component HVA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HVA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.466 |
1.469 |
| CA |
CB |
1.550 |
1.530 |
| CA |
C |
1.539 |
1.507 |
| CB |
CG1 |
1.529 |
1.531 |
| CB |
CG2 |
1.536 |
1.530 |
| CB |
OG3 |
1.408 |
1.429 |
| C |
O |
1.234 |
1.208 |
| C |
OXT |
1.337 |
1.342 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.001 |
1.009 |
| CA |
HA |
1.100 |
1.089 |
| CG1 |
HG11 |
1.100 |
1.090 |
| CG1 |
HG12 |
1.100 |
1.089 |
| CG1 |
HG13 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.090 |
| CG2 |
HG23 |
1.100 |
1.089 |
| OG3 |
HOG3 |
0.950 |
0.966 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HVA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
110.2 |
109.4 |
| N |
CA |
C |
112.9 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
108.2 |
109.5 |
| CB |
CA |
C |
113.9 |
109.5 |
| CA |
CB |
CG1 |
115.7 |
109.4 |
| CA |
CB |
CG2 |
111.6 |
109.5 |
| CA |
CB |
OG3 |
108.9 |
109.5 |
| CB |
CA |
HA |
107.1 |
109.5 |
| CA |
C |
O |
120.0 |
120.0 |
| CA |
C |
OXT |
118.0 |
120.0 |
| C |
CA |
HA |
104.0 |
109.5 |
| CG1 |
CB |
CG2 |
107.1 |
109.5 |
| CG1 |
CB |
OG3 |
104.9 |
109.4 |
| CB |
CG1 |
HG11 |
109.5 |
109.4 |
| CB |
CG1 |
HG12 |
109.4 |
109.4 |
| CB |
CG1 |
HG13 |
109.4 |
109.5 |
| CG2 |
CB |
OG3 |
108.2 |
109.5 |
| CB |
CG2 |
HG21 |
109.5 |
109.5 |
| CB |
CG2 |
HG22 |
109.5 |
109.4 |
| CB |
CG2 |
HG23 |
109.4 |
109.5 |
| CB |
OG3 |
HOG3 |
109.5 |
114.0 |
| O |
C |
OXT |
121.9 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| HG11 |
CG1 |
HG12 |
109.5 |
109.5 |
| HG11 |
CG1 |
HG13 |
109.4 |
109.5 |
| HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.4 |
| HG21 |
CG2 |
HG23 |
109.5 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
Torsion Angles for HVA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C |
231.4 |
240.0 |
| N |
CA |
CB |
CG1 |
62.0 |
185.0 |
| N |
CA |
CB |
CG2 |
184.8 |
305.0 |
| N |
CA |
CB |
OG3 |
304.2 |
65.0 |
| CB |
CA |
N |
HA |
116.8 |
120.0 |
| N |
CA |
C |
O |
297.4 |
340.0 |
| N |
CA |
C |
OXT |
121.0 |
160.0 |
| C |
CA |
N |
HA |
245.4 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
CB |
C |
128.1 |
120.0 |
| CB |
CA |
N |
H |
202.7 |
176.0 |
| CB |
CA |
N |
H2 |
322.7 |
300.0 |
| N |
CA |
CB |
HA |
242.5 |
240.0 |
| CB |
CA |
C |
O |
64.1 |
100.0 |
| CB |
CA |
C |
OXT |
247.6 |
280.0 |
| C |
CA |
CB |
HA |
114.4 |
120.0 |
| CG1 |
CB |
CA |
CG2 |
237.2 |
240.0 |
| CG1 |
CB |
CA |
OG3 |
117.8 |
120.0 |
| CA |
CB |
CG1 |
HG11 |
179.9 |
60.0 |
| CA |
CB |
CG1 |
HG12 |
300.0 |
180.0 |
| CA |
CB |
CG1 |
HG13 |
60.0 |
300.0 |
| CG2 |
CB |
CA |
OG3 |
240.7 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
153.7 |
60.1 |
| CA |
CB |
CG2 |
HG22 |
273.7 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
33.7 |
300.0 |
| CA |
CB |
OG3 |
HOG3 |
15.3 |
180.0 |
| N |
CA |
C |
CB |
233.3 |
240.0 |
| C |
CA |
N |
H |
331.3 |
296.0 |
| C |
CA |
N |
H2 |
91.3 |
60.0 |
| N |
CA |
C |
HA |
117.1 |
120.1 |
| C |
CA |
CB |
CG1 |
293.9 |
65.0 |
| C |
CA |
CB |
CG2 |
56.8 |
185.0 |
| C |
CA |
CB |
OG3 |
176.1 |
305.0 |
| CB |
CA |
C |
HA |
243.8 |
240.0 |
| O |
C |
CA |
OXT |
176.5 |
180.0 |
| CA |
C |
OXT |
HXT |
176.4 |
180.0 |
| CG1 |
CB |
CA |
C |
293.9 |
65.0 |
| CA |
CB |
CG1 |
CG2 |
125.2 |
120.0 |
| CA |
CB |
CG1 |
OG3 |
239.9 |
240.0 |
| CG1 |
CB |
CA |
HA |
179.5 |
305.0 |
| CG2 |
CB |
CG1 |
OG3 |
114.8 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
281.3 |
180.0 |
| CG1 |
CB |
CG2 |
HG22 |
41.3 |
300.0 |
| CG1 |
CB |
CG2 |
HG23 |
161.3 |
60.0 |
| CG1 |
CB |
OG3 |
HOG3 |
250.8 |
60.0 |
| HG11 |
CG1 |
CB |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
CB |
HG13 |
120.0 |
120.0 |
| HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
C |
56.8 |
185.0 |
| CA |
CB |
CG2 |
CG1 |
232.4 |
240.0 |
| CA |
CB |
CG2 |
OG3 |
119.8 |
120.0 |
| CG2 |
CB |
CA |
HA |
302.3 |
65.0 |
| CG1 |
CB |
CG2 |
OG3 |
247.4 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
54.8 |
300.0 |
| CG2 |
CB |
CG1 |
HG12 |
174.8 |
60.0 |
| CG2 |
CB |
CG1 |
HG13 |
294.8 |
180.0 |
| CG2 |
CB |
OG3 |
HOG3 |
136.8 |
300.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.1 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.1 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
| OG3 |
CB |
CA |
C |
176.1 |
305.0 |
| CA |
CB |
OG3 |
CG1 |
124.5 |
120.0 |
| CA |
CB |
OG3 |
CG2 |
238.6 |
240.0 |
| OG3 |
CB |
CA |
HA |
61.7 |
185.0 |
| CG1 |
CB |
OG3 |
CG2 |
114.1 |
120.0 |
| OG3 |
CB |
CG1 |
HG11 |
300.0 |
180.0 |
| OG3 |
CB |
CG1 |
HG12 |
60.0 |
300.0 |
| OG3 |
CB |
CG1 |
HG13 |
180.0 |
60.0 |
| OG3 |
CB |
CG2 |
HG21 |
33.9 |
300.0 |
| OG3 |
CB |
CG2 |
HG22 |
153.9 |
60.0 |
| OG3 |
CB |
CG2 |
HG23 |
273.9 |
180.0 |
| CA |
C |
O |
OXT |
183.7 |
180.0 |
| O |
C |
CA |
HA |
180.3 |
219.9 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| CA |
C |
OXT |
O |
176.4 |
180.0 |
| OXT |
C |
CA |
HA |
3.9 |
40.0 |
| H |
N |
CA |
CB |
202.7 |
176.0 |
| H |
N |
CA |
C |
331.3 |
296.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
85.9 |
56.0 |
| H2 |
N |
CA |
CB |
322.7 |
300.0 |
| H2 |
N |
CA |
C |
91.3 |
60.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
205.9 |
180.0 |
| N |
CA |
HA |
CB |
118.8 |
120.0 |
| N |
CA |
HA |
C |
239.7 |
240.0 |
| HA |
CA |
N |
H |
85.9 |
56.0 |
| HA |
CA |
N |
H2 |
205.9 |
180.0 |
| CB |
CA |
HA |
C |
120.9 |
120.0 |
| HA |
CA |
CB |
CG1 |
179.5 |
305.0 |
| HA |
CA |
CB |
CG2 |
302.3 |
65.0 |
| HA |
CA |
CB |
OG3 |
61.7 |
185.0 |
| HA |
CA |
C |
O |
180.3 |
219.9 |
| HA |
CA |
C |
OXT |
3.9 |
40.0 |
| HG11 |
CG1 |
CB |
CG2 |
54.8 |
300.0 |
| HG11 |
CG1 |
CB |
OG3 |
300.0 |
180.0 |
| CB |
CG1 |
HG11 |
HG12 |
120.0 |
119.9 |
| CB |
CG1 |
HG11 |
HG13 |
240.0 |
240.0 |
| HG12 |
CG1 |
HG11 |
HG13 |
120.0 |
120.1 |
| HG12 |
CG1 |
CB |
CG2 |
174.8 |
60.0 |
| HG12 |
CG1 |
CB |
OG3 |
60.0 |
300.0 |
| CB |
CG1 |
HG12 |
HG11 |
239.9 |
240.1 |
| CB |
CG1 |
HG12 |
HG13 |
120.0 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
240.0 |
239.9 |
| HG13 |
CG1 |
CB |
CG2 |
294.8 |
180.0 |
| HG13 |
CG1 |
CB |
OG3 |
180.0 |
60.0 |
| CB |
CG1 |
HG13 |
HG11 |
120.0 |
120.0 |
| CB |
CG1 |
HG13 |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
120.0 |
120.1 |
| HG21 |
CG2 |
CB |
OG3 |
33.9 |
300.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
119.9 |
| CB |
CG2 |
HG21 |
HG23 |
240.1 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
OG3 |
153.9 |
60.0 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.1 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
239.9 |
| HG23 |
CG2 |
CB |
OG3 |
273.9 |
180.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |