PDB Chemical Component HTR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HTR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.437 |
1.468 |
| N |
H |
1.020 |
1.009 |
| N |
H2 |
1.019 |
1.009 |
| CA |
CB |
1.567 |
1.529 |
| CA |
C |
1.544 |
1.506 |
| CA |
HA |
1.114 |
1.089 |
| CB |
OH |
1.441 |
1.429 |
| CB |
CG |
1.502 |
1.505 |
| CB |
HB |
1.116 |
1.089 |
| OH |
HH |
0.950 |
0.968 |
| CG |
CD1 |
1.375 |
1.342 |
| CG |
CD2 |
1.447 |
1.465 |
| CD1 |
NE1 |
1.388 |
1.368 |
| CD1 |
HD1 |
1.102 |
1.081 |
| NE1 |
CE2 |
1.370 |
1.377 |
| NE1 |
HE1 |
1.020 |
0.969 |
| CE2 |
CZ2 |
1.403 |
1.390 |
| CE2 |
CD2 |
1.390 |
1.406 |
| CZ2 |
CH2 |
1.371 |
1.376 |
| CZ2 |
HZ2 |
1.102 |
1.081 |
| CH2 |
CZ3 |
1.394 |
1.388 |
| CH2 |
HH2 |
1.103 |
1.081 |
| CZ3 |
CE3 |
1.399 |
1.366 |
| CZ3 |
HZ3 |
1.104 |
1.080 |
| CE3 |
CD2 |
1.400 |
1.396 |
| CE3 |
HE3 |
1.103 |
1.080 |
| C |
O |
1.240 |
1.208 |
| C |
OXT |
1.350 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HTR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
113.8 |
106.7 |
| CA |
N |
H2 |
110.6 |
106.7 |
| N |
CA |
CB |
113.8 |
109.4 |
| N |
CA |
C |
112.0 |
109.5 |
| N |
CA |
HA |
103.6 |
109.4 |
| H |
N |
H2 |
110.7 |
106.7 |
| CB |
CA |
C |
106.2 |
109.5 |
| CB |
CA |
HA |
109.8 |
109.5 |
| CA |
CB |
OH |
108.3 |
109.5 |
| CA |
CB |
CG |
112.8 |
109.5 |
| CA |
CB |
HB |
110.9 |
109.5 |
| C |
CA |
HA |
111.6 |
109.5 |
| CA |
C |
O |
118.4 |
120.0 |
| CA |
C |
OXT |
118.1 |
120.1 |
| OH |
CB |
CG |
116.5 |
109.5 |
| OH |
CB |
HB |
106.5 |
109.4 |
| CB |
OH |
HH |
108.3 |
106.8 |
| CG |
CB |
HB |
101.4 |
109.5 |
| CB |
CG |
CD1 |
129.9 |
126.5 |
| CB |
CG |
CD2 |
123.4 |
126.6 |
| CD1 |
CG |
CD2 |
106.7 |
106.9 |
| CG |
CD1 |
NE1 |
108.6 |
110.0 |
| CG |
CD1 |
HD1 |
125.3 |
125.0 |
| CG |
CD2 |
CE2 |
107.1 |
106.1 |
| CG |
CD2 |
CE3 |
133.0 |
134.0 |
| NE1 |
CD1 |
HD1 |
126.1 |
125.0 |
| CD1 |
NE1 |
CE2 |
109.4 |
109.9 |
| CD1 |
NE1 |
HE1 |
125.8 |
125.1 |
| CE2 |
NE1 |
HE1 |
124.8 |
125.1 |
| NE1 |
CE2 |
CZ2 |
129.1 |
133.5 |
| NE1 |
CE2 |
CD2 |
108.2 |
107.1 |
| CZ2 |
CE2 |
CD2 |
122.8 |
119.4 |
| CE2 |
CZ2 |
CH2 |
116.1 |
119.8 |
| CE2 |
CZ2 |
HZ2 |
123.0 |
120.1 |
| CE2 |
CD2 |
CE3 |
119.8 |
119.9 |
| CH2 |
CZ2 |
HZ2 |
120.9 |
120.1 |
| CZ2 |
CH2 |
CZ3 |
122.9 |
120.6 |
| CZ2 |
CH2 |
HH2 |
117.7 |
119.7 |
| CZ3 |
CH2 |
HH2 |
119.4 |
119.6 |
| CH2 |
CZ3 |
CE3 |
120.3 |
120.5 |
| CH2 |
CZ3 |
HZ3 |
119.7 |
119.7 |
| CE3 |
CZ3 |
HZ3 |
120.0 |
119.8 |
| CZ3 |
CE3 |
CD2 |
118.0 |
119.8 |
| CZ3 |
CE3 |
HE3 |
121.0 |
120.1 |
| CD2 |
CE3 |
HE3 |
121.0 |
120.1 |
| O |
C |
OXT |
123.5 |
119.9 |
| C |
OXT |
HXT |
118.1 |
120.1 |
Torsion Angles for HTR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
239.6 |
240.0 |
| CB |
CA |
N |
HA |
119.2 |
120.0 |
| N |
CA |
CB |
OH |
179.8 |
180.0 |
| N |
CA |
CB |
CG |
310.3 |
300.0 |
| N |
CA |
CB |
HB |
63.3 |
60.1 |
| C |
CA |
N |
HA |
239.6 |
240.0 |
| N |
CA |
C |
O |
137.1 |
330.1 |
| N |
CA |
C |
OXT |
314.8 |
150.0 |
| CA |
N |
H |
H2 |
234.7 |
246.2 |
| H |
N |
CA |
CB |
180.1 |
53.8 |
| H |
N |
CA |
C |
300.5 |
173.8 |
| H |
N |
CA |
HA |
60.9 |
293.8 |
| CA |
N |
H2 |
H |
127.1 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
300.0 |
| H2 |
N |
CA |
C |
175.2 |
60.0 |
| H2 |
N |
CA |
HA |
295.6 |
180.0 |
| CB |
CA |
N |
H |
180.1 |
53.8 |
| CB |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
123.7 |
120.0 |
| N |
CA |
CB |
HA |
244.4 |
240.1 |
| C |
CA |
CB |
HA |
120.7 |
120.0 |
| CB |
CA |
C |
O |
261.9 |
90.1 |
| CB |
CA |
C |
OXT |
79.5 |
270.0 |
| OH |
CB |
CA |
CG |
229.5 |
240.0 |
| OH |
CB |
CA |
HB |
116.6 |
119.9 |
| CA |
CB |
OH |
HH |
180.0 |
60.0 |
| CG |
CB |
CA |
HB |
247.0 |
239.9 |
| CA |
CB |
CG |
CD1 |
347.1 |
270.0 |
| CA |
CB |
CG |
CD2 |
168.3 |
89.8 |
| C |
CA |
N |
H |
300.5 |
173.8 |
| C |
CA |
N |
H2 |
175.2 |
60.0 |
| N |
CA |
C |
CB |
235.2 |
240.0 |
| N |
CA |
C |
HA |
115.7 |
120.0 |
| CB |
CA |
C |
HA |
240.4 |
240.0 |
| C |
CA |
CB |
OH |
56.1 |
60.0 |
| C |
CA |
CB |
CG |
186.6 |
180.0 |
| C |
CA |
CB |
HB |
299.6 |
300.0 |
| O |
C |
CA |
OXT |
182.3 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| HA |
CA |
N |
H |
60.9 |
293.8 |
| HA |
CA |
N |
H2 |
295.6 |
180.0 |
| N |
CA |
HA |
CB |
121.9 |
119.9 |
| N |
CA |
HA |
C |
239.3 |
240.0 |
| CB |
CA |
HA |
C |
117.4 |
120.0 |
| HA |
CA |
CB |
OH |
295.4 |
299.9 |
| HA |
CA |
CB |
CG |
65.9 |
59.9 |
| HA |
CA |
CB |
HB |
178.9 |
180.0 |
| HA |
CA |
C |
O |
21.4 |
210.1 |
| HA |
CA |
C |
OXT |
199.1 |
30.0 |
| OH |
CB |
CA |
C |
56.1 |
60.0 |
| OH |
CB |
CA |
HA |
295.4 |
299.9 |
| CA |
CB |
OH |
CG |
128.4 |
120.0 |
| CA |
CB |
OH |
HB |
240.7 |
240.0 |
| CG |
CB |
OH |
HB |
112.3 |
120.0 |
| OH |
CB |
CG |
CD1 |
113.2 |
30.0 |
| OH |
CB |
CG |
CD2 |
294.4 |
209.8 |
| CG |
CB |
CA |
C |
186.6 |
180.0 |
| CG |
CB |
CA |
HA |
65.9 |
59.9 |
| CA |
CB |
CG |
OH |
233.8 |
240.0 |
| CA |
CB |
CG |
HB |
118.6 |
120.0 |
| OH |
CB |
CG |
HB |
244.8 |
240.0 |
| CG |
CB |
OH |
HH |
51.7 |
300.0 |
| CD1 |
CG |
CB |
CD2 |
178.8 |
180.2 |
| CB |
CG |
CD1 |
NE1 |
179.6 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.6 |
0.0 |
| CB |
CG |
CD2 |
CE2 |
180.9 |
179.8 |
| CB |
CG |
CD2 |
CE3 |
359.0 |
0.6 |
| HB |
CB |
CA |
C |
299.6 |
300.0 |
| HB |
CB |
CA |
HA |
178.9 |
180.0 |
| CA |
CB |
HB |
OH |
117.6 |
119.9 |
| CA |
CB |
HB |
CG |
240.0 |
240.0 |
| OH |
CB |
HB |
CG |
122.4 |
120.0 |
| HB |
CB |
OH |
HH |
299.3 |
180.0 |
| HB |
CB |
CG |
CD1 |
228.4 |
149.9 |
| HB |
CB |
CG |
CD2 |
49.6 |
329.7 |
| HH |
OH |
CB |
CG |
51.7 |
300.0 |
| HH |
OH |
CB |
HB |
299.3 |
180.0 |
| CD1 |
CG |
CB |
HB |
228.4 |
149.9 |
| CB |
CG |
CD1 |
CD2 |
181.0 |
179.8 |
| CD1 |
CG |
CD2 |
CE2 |
1.9 |
359.7 |
| CD1 |
CG |
CD2 |
CE3 |
179.9 |
180.5 |
| NE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
NE1 |
CE2 |
0.5 |
0.0 |
| CG |
CD1 |
NE1 |
HE1 |
180.5 |
180.1 |
| CD2 |
CG |
CB |
HB |
49.6 |
329.7 |
| CB |
CG |
CD2 |
CD1 |
179.0 |
180.2 |
| CD2 |
CG |
CD1 |
NE1 |
358.5 |
0.2 |
| CD2 |
CG |
CD1 |
HD1 |
178.6 |
180.2 |
| NE1 |
CE2 |
CD2 |
CG |
358.4 |
0.3 |
| CZ2 |
CE2 |
CD2 |
CG |
179.4 |
180.1 |
| CE2 |
CD2 |
CG |
CE3 |
182.0 |
179.2 |
| CZ3 |
CE3 |
CD2 |
CG |
182.2 |
179.7 |
| CG |
CD2 |
CE3 |
HE3 |
2.1 |
359.4 |
| NE1 |
CD1 |
CG |
CD2 |
358.5 |
0.2 |
| CG |
CD1 |
NE1 |
HD1 |
180.0 |
180.0 |
| CE2 |
NE1 |
CD1 |
HE1 |
180.0 |
179.9 |
| CD1 |
NE1 |
CE2 |
CZ2 |
179.7 |
180.1 |
| CD1 |
NE1 |
CE2 |
CD2 |
0.7 |
359.8 |
| HD1 |
CD1 |
CG |
CD2 |
178.6 |
180.2 |
| CG |
CD1 |
HD1 |
NE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
NE1 |
CE2 |
180.5 |
180.0 |
| HD1 |
CD1 |
NE1 |
HE1 |
0.5 |
0.1 |
| CG |
CD2 |
CE2 |
NE1 |
358.4 |
0.3 |
| CE2 |
NE1 |
CD1 |
HD1 |
180.5 |
180.0 |
| CD1 |
NE1 |
CE2 |
HE1 |
180.0 |
180.1 |
| CZ2 |
CE2 |
NE1 |
CD2 |
179.0 |
180.3 |
| NE1 |
CE2 |
CZ2 |
CH2 |
179.6 |
179.9 |
| NE1 |
CE2 |
CZ2 |
HZ2 |
359.6 |
360.0 |
| NE1 |
CE2 |
CD2 |
CE3 |
180.1 |
179.7 |
| HE1 |
NE1 |
CD1 |
HD1 |
0.5 |
0.1 |
| CD1 |
NE1 |
HE1 |
CE2 |
180.0 |
179.9 |
| HE1 |
NE1 |
CE2 |
CZ2 |
359.7 |
0.0 |
| HE1 |
NE1 |
CE2 |
CD2 |
180.7 |
179.7 |
| CG |
CD2 |
CE2 |
CZ2 |
179.4 |
180.1 |
| CZ2 |
CE2 |
NE1 |
HE1 |
359.7 |
0.0 |
| NE1 |
CE2 |
CZ2 |
CD2 |
181.2 |
179.7 |
| CZ2 |
CE2 |
CD2 |
CE3 |
1.0 |
359.4 |
| CH2 |
CZ2 |
CE2 |
HZ2 |
180.0 |
180.0 |
| CE2 |
CZ2 |
CH2 |
CZ3 |
1.1 |
0.1 |
| CE2 |
CZ2 |
CH2 |
HH2 |
181.1 |
179.9 |
| CG |
CD2 |
CE2 |
CE3 |
178.3 |
180.7 |
| CD2 |
CE2 |
NE1 |
HE1 |
180.7 |
179.7 |
| NE1 |
CE2 |
CD2 |
CZ2 |
179.0 |
180.2 |
| CD2 |
CE2 |
CZ2 |
CH2 |
358.4 |
0.3 |
| CD2 |
CE2 |
CZ2 |
HZ2 |
178.4 |
180.3 |
| CZ3 |
CE3 |
CD2 |
CE2 |
0.0 |
0.6 |
| CE2 |
CD2 |
CE3 |
HE3 |
180.0 |
180.3 |
| CH2 |
CZ2 |
CE2 |
CD2 |
358.4 |
0.3 |
| CE2 |
CZ2 |
CH2 |
HZ2 |
180.0 |
180.0 |
| CZ3 |
CH2 |
CZ2 |
HH2 |
180.0 |
180.2 |
| CZ2 |
CH2 |
CZ3 |
CE3 |
359.9 |
359.9 |
| CZ2 |
CH2 |
CZ3 |
HZ3 |
179.9 |
180.0 |
| HZ2 |
CZ2 |
CE2 |
CD2 |
178.4 |
180.3 |
| CE2 |
CZ2 |
HZ2 |
CH2 |
180.0 |
180.0 |
| HZ2 |
CZ2 |
CH2 |
CZ3 |
181.1 |
180.0 |
| HZ2 |
CZ2 |
CH2 |
HH2 |
1.1 |
359.9 |
| CZ3 |
CH2 |
CZ2 |
HZ2 |
181.1 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
HH2 |
180.0 |
179.8 |
| CE3 |
CZ3 |
CH2 |
HZ3 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
CD2 |
359.5 |
359.7 |
| CH2 |
CZ3 |
CE3 |
HE3 |
179.6 |
180.0 |
| HH2 |
CH2 |
CZ2 |
HZ2 |
1.1 |
359.9 |
| CZ2 |
CH2 |
HH2 |
CZ3 |
180.0 |
180.2 |
| HH2 |
CH2 |
CZ3 |
CE3 |
179.9 |
180.1 |
| HH2 |
CH2 |
CZ3 |
HZ3 |
359.9 |
0.1 |
| CG |
CD2 |
CE3 |
CZ3 |
182.2 |
179.7 |
| CE2 |
CD2 |
CE3 |
CZ3 |
0.0 |
0.6 |
| CE3 |
CZ3 |
CH2 |
HH2 |
179.9 |
180.1 |
| CH2 |
CZ3 |
CE3 |
HZ3 |
180.0 |
180.0 |
| CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
179.7 |
| HZ3 |
CZ3 |
CH2 |
HH2 |
359.9 |
0.1 |
| CH2 |
CZ3 |
HZ3 |
CE3 |
180.0 |
180.0 |
| HZ3 |
CZ3 |
CE3 |
CD2 |
179.5 |
179.7 |
| HZ3 |
CZ3 |
CE3 |
HE3 |
359.5 |
360.0 |
| CG |
CD2 |
CE3 |
CE2 |
182.2 |
179.1 |
| CD2 |
CE3 |
CZ3 |
HZ3 |
179.5 |
179.7 |
| CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.3 |
| HE3 |
CE3 |
CZ3 |
HZ3 |
359.5 |
360.0 |
| CZ3 |
CE3 |
HE3 |
CD2 |
179.9 |
179.7 |
| O |
C |
CA |
HA |
21.4 |
210.1 |
| CA |
C |
O |
OXT |
177.5 |
179.9 |
| O |
C |
OXT |
HXT |
357.5 |
0.0 |
| OXT |
C |
CA |
HA |
199.1 |
30.0 |
| CA |
C |
OXT |
O |
182.5 |
180.1 |