PDB Chemical Component HTR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HTR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.437 1.468
N H 1.020 1.009
N H2 1.019 1.009
CA CB 1.567 1.529
CA C 1.544 1.506
CA HA 1.114 1.089
CB OH 1.441 1.429
CB CG 1.502 1.505
CB HB 1.116 1.089
OH HH 0.950 0.968
CG CD1 1.375 1.342
CG CD2 1.447 1.465
CD1 NE1 1.388 1.368
CD1 HD1 1.102 1.081
NE1 CE2 1.370 1.377
NE1 HE1 1.020 0.969
CE2 CZ2 1.403 1.390
CE2 CD2 1.390 1.406
CZ2 CH2 1.371 1.376
CZ2 HZ2 1.102 1.081
CH2 CZ3 1.394 1.388
CH2 HH2 1.103 1.081
CZ3 CE3 1.399 1.366
CZ3 HZ3 1.104 1.080
CE3 CD2 1.400 1.396
CE3 HE3 1.103 1.080
C O 1.240 1.208
C OXT 1.350 1.342
OXT HXT 0.950 0.967

Bond Angles for HTR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 113.8 106.7
CA N H2 110.6 106.7
N CA CB 113.8 109.4
N CA C 112.0 109.5
N CA HA 103.6 109.4
H N H2 110.7 106.7
CB CA C 106.2 109.5
CB CA HA 109.8 109.5
CA CB OH 108.3 109.5
CA CB CG 112.8 109.5
CA CB HB 110.9 109.5
C CA HA 111.6 109.5
CA C O 118.4 120.0
CA C OXT 118.1 120.1
OH CB CG 116.5 109.5
OH CB HB 106.5 109.4
CB OH HH 108.3 106.8
CG CB HB 101.4 109.5
CB CG CD1 129.9 126.5
CB CG CD2 123.4 126.6
CD1 CG CD2 106.7 106.9
CG CD1 NE1 108.6 110.0
CG CD1 HD1 125.3 125.0
CG CD2 CE2 107.1 106.1
CG CD2 CE3 133.0 134.0
NE1 CD1 HD1 126.1 125.0
CD1 NE1 CE2 109.4 109.9
CD1 NE1 HE1 125.8 125.1
CE2 NE1 HE1 124.8 125.1
NE1 CE2 CZ2 129.1 133.5
NE1 CE2 CD2 108.2 107.1
CZ2 CE2 CD2 122.8 119.4
CE2 CZ2 CH2 116.1 119.8
CE2 CZ2 HZ2 123.0 120.1
CE2 CD2 CE3 119.8 119.9
CH2 CZ2 HZ2 120.9 120.1
CZ2 CH2 CZ3 122.9 120.6
CZ2 CH2 HH2 117.7 119.7
CZ3 CH2 HH2 119.4 119.6
CH2 CZ3 CE3 120.3 120.5
CH2 CZ3 HZ3 119.7 119.7
CE3 CZ3 HZ3 120.0 119.8
CZ3 CE3 CD2 118.0 119.8
CZ3 CE3 HE3 121.0 120.1
CD2 CE3 HE3 121.0 120.1
O C OXT 123.5 119.9
C OXT HXT 118.1 120.1

Torsion Angles for HTR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.3 113.8
CB CA N C 239.6 240.0
CB CA N HA 119.2 120.0
N CA CB OH 179.8 180.0
N CA CB CG 310.3 300.0
N CA CB HB 63.3 60.1
C CA N HA 239.6 240.0
N CA C O 137.1 330.1
N CA C OXT 314.8 150.0
CA N H H2 234.7 246.2
H N CA CB 180.1 53.8
H N CA C 300.5 173.8
H N CA HA 60.9 293.8
CA N H2 H 127.1 113.8
H2 N CA CB 54.7 300.0
H2 N CA C 175.2 60.0
H2 N CA HA 295.6 180.0
CB CA N H 180.1 53.8
CB CA N H2 54.7 300.0
N CA CB C 123.7 120.0
N CA CB HA 244.4 240.1
C CA CB HA 120.7 120.0
CB CA C O 261.9 90.1
CB CA C OXT 79.5 270.0
OH CB CA CG 229.5 240.0
OH CB CA HB 116.6 119.9
CA CB OH HH 180.0 60.0
CG CB CA HB 247.0 239.9
CA CB CG CD1 347.1 270.0
CA CB CG CD2 168.3 89.8
C CA N H 300.5 173.8
C CA N H2 175.2 60.0
N CA C CB 235.2 240.0
N CA C HA 115.7 120.0
CB CA C HA 240.4 240.0
C CA CB OH 56.1 60.0
C CA CB CG 186.6 180.0
C CA CB HB 299.6 300.0
O C CA OXT 182.3 180.1
CA C OXT HXT 180.0 180.1
HA CA N H 60.9 293.8
HA CA N H2 295.6 180.0
N CA HA CB 121.9 119.9
N CA HA C 239.3 240.0
CB CA HA C 117.4 120.0
HA CA CB OH 295.4 299.9
HA CA CB CG 65.9 59.9
HA CA CB HB 178.9 180.0
HA CA C O 21.4 210.1
HA CA C OXT 199.1 30.0
OH CB CA C 56.1 60.0
OH CB CA HA 295.4 299.9
CA CB OH CG 128.4 120.0
CA CB OH HB 240.7 240.0
CG CB OH HB 112.3 120.0
OH CB CG CD1 113.2 30.0
OH CB CG CD2 294.4 209.8
CG CB CA C 186.6 180.0
CG CB CA HA 65.9 59.9
CA CB CG OH 233.8 240.0
CA CB CG HB 118.6 120.0
OH CB CG HB 244.8 240.0
CG CB OH HH 51.7 300.0
CD1 CG CB CD2 178.8 180.2
CB CG CD1 NE1 179.6 180.0
CB CG CD1 HD1 359.6 0.0
CB CG CD2 CE2 180.9 179.8
CB CG CD2 CE3 359.0 0.6
HB CB CA C 299.6 300.0
HB CB CA HA 178.9 180.0
CA CB HB OH 117.6 119.9
CA CB HB CG 240.0 240.0
OH CB HB CG 122.4 120.0
HB CB OH HH 299.3 180.0
HB CB CG CD1 228.4 149.9
HB CB CG CD2 49.6 329.7
HH OH CB CG 51.7 300.0
HH OH CB HB 299.3 180.0
CD1 CG CB HB 228.4 149.9
CB CG CD1 CD2 181.0 179.8
CD1 CG CD2 CE2 1.9 359.7
CD1 CG CD2 CE3 179.9 180.5
NE1 CD1 CG HD1 180.0 180.0
CG CD1 NE1 CE2 0.5 0.0
CG CD1 NE1 HE1 180.5 180.1
CD2 CG CB HB 49.6 329.7
CB CG CD2 CD1 179.0 180.2
CD2 CG CD1 NE1 358.5 0.2
CD2 CG CD1 HD1 178.6 180.2
NE1 CE2 CD2 CG 358.4 0.3
CZ2 CE2 CD2 CG 179.4 180.1
CE2 CD2 CG CE3 182.0 179.2
CZ3 CE3 CD2 CG 182.2 179.7
CG CD2 CE3 HE3 2.1 359.4
NE1 CD1 CG CD2 358.5 0.2
CG CD1 NE1 HD1 180.0 180.0
CE2 NE1 CD1 HE1 180.0 179.9
CD1 NE1 CE2 CZ2 179.7 180.1
CD1 NE1 CE2 CD2 0.7 359.8
HD1 CD1 CG CD2 178.6 180.2
CG CD1 HD1 NE1 180.0 180.0
HD1 CD1 NE1 CE2 180.5 180.0
HD1 CD1 NE1 HE1 0.5 0.1
CG CD2 CE2 NE1 358.4 0.3
CE2 NE1 CD1 HD1 180.5 180.0
CD1 NE1 CE2 HE1 180.0 180.1
CZ2 CE2 NE1 CD2 179.0 180.3
NE1 CE2 CZ2 CH2 179.6 179.9
NE1 CE2 CZ2 HZ2 359.6 360.0
NE1 CE2 CD2 CE3 180.1 179.7
HE1 NE1 CD1 HD1 0.5 0.1
CD1 NE1 HE1 CE2 180.0 179.9
HE1 NE1 CE2 CZ2 359.7 0.0
HE1 NE1 CE2 CD2 180.7 179.7
CG CD2 CE2 CZ2 179.4 180.1
CZ2 CE2 NE1 HE1 359.7 0.0
NE1 CE2 CZ2 CD2 181.2 179.7
CZ2 CE2 CD2 CE3 1.0 359.4
CH2 CZ2 CE2 HZ2 180.0 180.0
CE2 CZ2 CH2 CZ3 1.1 0.1
CE2 CZ2 CH2 HH2 181.1 179.9
CG CD2 CE2 CE3 178.3 180.7
CD2 CE2 NE1 HE1 180.7 179.7
NE1 CE2 CD2 CZ2 179.0 180.2
CD2 CE2 CZ2 CH2 358.4 0.3
CD2 CE2 CZ2 HZ2 178.4 180.3
CZ3 CE3 CD2 CE2 0.0 0.6
CE2 CD2 CE3 HE3 180.0 180.3
CH2 CZ2 CE2 CD2 358.4 0.3
CE2 CZ2 CH2 HZ2 180.0 180.0
CZ3 CH2 CZ2 HH2 180.0 180.2
CZ2 CH2 CZ3 CE3 359.9 359.9
CZ2 CH2 CZ3 HZ3 179.9 180.0
HZ2 CZ2 CE2 CD2 178.4 180.3
CE2 CZ2 HZ2 CH2 180.0 180.0
HZ2 CZ2 CH2 CZ3 181.1 180.0
HZ2 CZ2 CH2 HH2 1.1 359.9
CZ3 CH2 CZ2 HZ2 181.1 180.0
CZ2 CH2 CZ3 HH2 180.0 179.8
CE3 CZ3 CH2 HZ3 180.0 180.0
CH2 CZ3 CE3 CD2 359.5 359.7
CH2 CZ3 CE3 HE3 179.6 180.0
HH2 CH2 CZ2 HZ2 1.1 359.9
CZ2 CH2 HH2 CZ3 180.0 180.2
HH2 CH2 CZ3 CE3 179.9 180.1
HH2 CH2 CZ3 HZ3 359.9 0.1
CG CD2 CE3 CZ3 182.2 179.7
CE2 CD2 CE3 CZ3 0.0 0.6
CE3 CZ3 CH2 HH2 179.9 180.1
CH2 CZ3 CE3 HZ3 180.0 180.0
CD2 CE3 CZ3 HE3 180.0 179.7
HZ3 CZ3 CH2 HH2 359.9 0.1
CH2 CZ3 HZ3 CE3 180.0 180.0
HZ3 CZ3 CE3 CD2 179.5 179.7
HZ3 CZ3 CE3 HE3 359.5 360.0
CG CD2 CE3 CE2 182.2 179.1
CD2 CE3 CZ3 HZ3 179.5 179.7
CZ3 CE3 CD2 HE3 180.0 180.3
HE3 CE3 CZ3 HZ3 359.5 360.0
CZ3 CE3 HE3 CD2 179.9 179.7
O C CA HA 21.4 210.1
CA C O OXT 177.5 179.9
O C OXT HXT 357.5 0.0
OXT C CA HA 199.1 30.0
CA C OXT O 182.5 180.1