PDB Chemical Component HTL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HTL

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1' C2' 1.470 1.347
N1' C6' 1.482 1.349
C2' C2A 1.390 1.491
C2' N3' 1.420 1.346
C2A H2A1 1.115 1.097
C2A H2A2 1.116 1.098
C2A H2A3 1.115 1.098
N3' C4' 1.466 1.349
C4' N4' 1.451 1.417
C4' C5' 1.563 1.370
N4' H4'1 1.020 0.997
N4' H4'2 1.020 0.998
C5' C6' 1.408 1.371
C5' C35 1.512 1.504
C6' H6' 1.103 1.086
C35 N3 1.450 1.447
C35 H351 1.115 1.096
C35 H352 1.115 1.097
N3 C2 1.512 1.315
N3 C4 1.392 1.378
C2 S1 1.616 1.710
C2 C1' 1.973 1.424
S1 C5 1.772 1.708
C5 C4 1.326 1.358
C5 C5A 1.522 1.503
C4 C4A 1.424 1.470
C4A H4A1 1.116 1.105
C4A H4A2 1.114 1.105
C4A H4A3 1.115 1.105
C5A C5B 1.515 1.526
C5A H5A1 1.114 1.098
C5A H5A2 1.115 1.097
C5B O5G 1.508 1.418
C5B H5B1 1.115 1.095
C5B H5B2 1.115 1.095
O5G P1 1.556 1.618
P1 O11 1.568 1.616
P1 O12 1.479 1.502
P1 O13 1.455 1.618
O11 P2 1.668 1.616
P2 O21 1.523 1.501
P2 O22 1.454 1.616
P2 O23 1.545 1.616
O22 H22O 0.950 0.980
O23 H23O 0.950 0.981
C1' O2' 1.237 1.251
C1' C3' 1.574 1.516
C3' H3'1 1.115 1.101
C3' H3'2 1.115 1.101
C3' H3'3 1.115 1.105
HO1 O13 0.950 0.981

Bond Angles for HTL

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' N1' C6' 118.8 114.9
N1' C2' C2A 121.4 116.5
N1' C2' N3' 120.9 127.0
N1' C6' C5' 123.8 123.1
N1' C6' H6' 120.9 114.7
C2A C2' N3' 117.7 116.6
C2' C2A H2A1 121.4 110.4
C2' C2A H2A2 108.0 111.3
C2' C2A H2A3 108.0 111.3
C2' N3' C4' 120.4 115.0
H2A1 C2A H2A2 107.9 108.4
H2A1 C2A H2A3 108.0 108.4
H2A2 C2A H2A3 101.9 106.8
N3' C4' N4' 115.8 118.0
N3' C4' C5' 120.2 123.2
N4' C4' C5' 124.0 118.8
C4' N4' H4'1 115.8 118.9
C4' N4' H4'2 109.9 118.9
C4' C5' C6' 115.8 116.9
C4' C5' C35 122.4 123.0
H4'1 N4' H4'2 110.0 121.9
C6' C5' C35 121.8 120.1
C5' C6' H6' 115.3 122.1
C5' C35 N3 111.0 109.7
C5' C35 H351 111.6 110.9
C5' C35 H352 111.6 110.9
N3 C35 H351 111.6 109.4
N3 C35 H352 111.6 109.4
C35 N3 C2 123.8 122.0
C35 N3 C4 118.6 122.8
H351 C35 H352 98.8 106.4
C2 N3 C4 110.1 115.1
N3 C2 S1 106.0 111.2
N3 C2 C1' 125.6 127.5
N3 C4 C5 109.0 111.4
N3 C4 C4A 131.6 118.4
S1 C2 C1' 113.6 121.2
C2 S1 C5 88.9 90.7
C2 C1' O2' 122.9 126.1
C2 C1' C3' 118.9 118.6
S1 C5 C4 106.0 111.6
S1 C5 C5A 102.9 119.3
C4 C5 C5A 113.3 129.1
C5 C4 C4A 119.2 130.2
C5 C5A C5B 98.6 112.8
C5 C5A H5A1 116.4 109.5
C5 C5A H5A2 116.4 109.1
C4 C4A H4A1 131.6 111.4
C4 C4A H4A2 104.6 112.2
C4 C4A H4A3 104.5 112.3
H4A1 C4A H4A2 104.5 107.4
H4A1 C4A H4A3 104.5 107.4
H4A2 C4A H4A3 104.5 105.8
C5B C5A H5A1 116.4 109.6
C5B C5A H5A2 116.4 109.0
C5A C5B O5G 126.0 109.8
C5A C5B H5B1 106.4 109.8
C5A C5B H5B2 106.4 111.9
H5A1 C5A H5A2 94.0 106.6
O5G C5B H5B1 106.4 107.8
O5G C5B H5B2 106.4 108.8
C5B O5G P1 132.0 120.0
H5B1 C5B H5B2 103.1 108.8
O5G P1 O11 98.6 104.6
O5G P1 O12 114.2 114.7
O5G P1 O13 104.5 104.5
O11 P1 O12 110.7 114.2
O11 P1 O13 107.9 103.3
P1 O11 P2 133.4 131.0
O12 P1 O13 118.8 114.3
O11 P2 O21 106.8 114.6
O11 P2 O22 105.5 103.1
O11 P2 O23 101.4 103.4
O21 P2 O22 122.0 115.2
O21 P2 O23 107.5 115.3
O22 P2 O23 111.5 103.6
P2 O22 H22O 105.5 118.9
P2 O23 H23O 101.3 119.0
O2' C1' C3' 117.6 115.3
C1' C3' H3'1 118.9 113.2
C1' C3' H3'2 108.8 112.9
C1' C3' H3'3 108.8 114.2
H3'1 C3' H3'2 108.9 107.5
H3'1 C3' H3'3 108.8 103.9
H3'2 C3' H3'3 101.2 104.3

Torsion Angles for HTL

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2' N1' C6' C5' 0.1 0.0
C2' N1' C6' H6' 180.1 179.9
C2A C2' N1' N3' 180.0 180.0
N1' C2' C2A H2A1 180.1 119.9
N1' C2' C2A H2A2 305.3 240.4
N1' C2' C2A H2A3 54.7 359.4
N1' C2' N3' C4' 0.1 360.0
C6' N1' C2' C2A 179.9 180.0
C6' N1' C2' N3' 359.9 360.0
C4' C5' C6' N1' 0.0 360.0
N1' C6' C5' C35 180.1 180.0
C5' C6' N1' H6' 179.9 180.1
C2A C2' N1' C6' 179.9 180.0
N1' C2' C2A N3' 180.0 180.0
C2A C2' N3' C4' 180.1 180.0
H2A1 C2A C2' H2A2 234.8 239.5
H2A1 C2A C2' H2A3 125.4 120.5
H2A2 C2A C2' H2A3 250.6 241.0
N3' C2' N1' C6' 359.9 360.0
N1' C2' N3' C2A 180.0 180.0
N3' C2' C2A H2A1 0.1 299.9
N3' C2' C2A H2A2 125.3 60.3
N3' C2' C2A H2A3 234.7 179.4
C2' N3' C4' N4' 180.0 180.0
C2' N3' C4' C5' 360.0 0.1
H2A1 C2A C2' N3' 0.1 299.9
C2' C2A H2A1 H2A2 125.2 122.2
C2' C2A H2A1 H2A3 234.6 237.8
H2A2 C2A H2A1 H2A3 109.4 115.6
H2A2 C2A C2' N3' 125.3 60.3
C2' C2A H2A2 H2A1 227.1 238.4
C2' C2A H2A2 H2A3 113.6 121.7
H2A1 C2A H2A2 H2A3 246.5 243.3
H2A3 C2A C2' N3' 234.7 179.4
C2' C2A H2A3 H2A1 133.0 121.7
C2' C2A H2A3 H2A2 246.4 238.3
H2A1 C2A H2A3 H2A2 113.5 116.6
N4' C4' N3' C5' 180.0 179.9
N3' C4' N4' H4'1 180.0 167.8
N3' C4' N4' H4'2 54.7 354.0
N3' C4' C5' C6' 360.0 360.0
N3' C4' C5' C35 179.9 179.9
N3' C4' N4' C5' 180.0 180.1
N4' C4' C5' C6' 179.9 180.0
N4' C4' C5' C35 359.9 0.0
H4'1 N4' C4' H4'2 125.3 173.8
N1' C6' C5' C4' 0.0 360.0
N3' C4' C5' N4' 180.0 179.9
C5' C4' N4' H4'1 0.1 347.7
C5' C4' N4' H4'2 234.7 173.9
C6' C5' C4' C35 180.1 180.0
C4' C5' C6' H6' 179.9 180.1
C4' C5' C35 N3 294.3 180.0
C4' C5' C35 H351 59.5 301.0
C4' C5' C35 H352 169.0 59.0
H4'1 N4' C4' C5' 0.1 347.7
C4' N4' H4'1 H4'2 234.7 186.4
H4'2 N4' C4' C5' 234.7 173.9
C4' N4' H4'2 H4'1 128.6 173.6
N1' C6' C5' H6' 180.1 179.9
C4' C5' C6' C35 179.9 180.0
C6' C5' C35 N3 114.2 360.0
C6' C5' C35 H351 239.5 121.0
C6' C5' C35 H352 349.0 239.0
C4' C5' C35 C6' 180.1 180.0
C35 C5' C6' H6' 0.0 0.1
N3 C35 C5' H351 234.7 239.0
N3 C35 C5' H352 125.2 121.0
C5' C35 N3 C2 112.8 90.0
C5' C35 N3 C4 259.6 270.0
H351 C35 C5' H352 250.5 242.0
N1' C6' H6' C5' 180.0 180.1
H6' C6' C5' C35 0.0 0.1
C5' C35 N3 H351 125.2 121.9
C5' C35 N3 H352 234.8 238.1
H351 C35 N3 H352 109.5 116.3
C2 N3 C35 C4 213.2 180.0
C35 N3 C2 S1 131.6 180.0
C35 N3 C2 C1' 355.6 360.0
C35 N3 C4 C5 194.3 180.0
C35 N3 C4 C4A 9.7 0.0
C5' C35 H351 N3 235.1 238.9
C5' C35 H351 H352 117.5 120.7
N3 C35 H351 H352 242.5 241.9
H351 C35 N3 C2 347.6 328.1
H351 C35 N3 C4 134.3 148.1
C5' C35 H352 N3 124.9 121.1
C5' C35 H352 H351 242.5 239.3
N3 C35 H352 H351 117.5 118.2
H352 C35 N3 C2 238.0 211.9
H352 C35 N3 C4 24.8 31.9
C2 N3 C35 H351 347.6 328.1
C2 N3 C35 H352 238.0 211.9
C35 N3 C2 C4 149.2 180.0
C2 N3 C4 C5 345.2 360.0
C2 N3 C4 C4A 160.7 180.0
S1 C2 N3 C1' 135.9 180.0
N3 C2 S1 C5 32.4 360.0
N3 C2 C1' O2' 332.2 330.1
N3 C2 C1' C3' 161.7 150.0
C4 N3 C35 H351 134.3 148.1
C4 N3 C35 H352 24.8 31.9
C35 N3 C4 C2 209.0 180.0
C4 N3 C2 S1 342.4 0.0
C4 N3 C2 C1' 206.5 180.0
S1 C5 C4 N3 38.2 0.0
N3 C4 C5 C5A 150.3 180.0
C5 C4 N3 C4A 184.6 180.0
N3 C4 C4A H4A1 180.0 127.0
N3 C4 C4A H4A2 305.3 247.4
N3 C4 C4A H4A3 54.8 6.4
S1 C2 N3 C4 342.4 0.0
N3 C2 S1 C1' 218.1 180.0
S1 C2 C1' O2' 199.1 150.1
S1 C2 C1' C3' 28.5 330.0
C2 S1 C5 C4 316.7 360.0
C2 S1 C5 C5A 197.4 180.0
C1' C2 N3 C4 206.5 180.0
N3 C2 C1' S1 133.2 180.0
C1' C2 S1 C5 174.2 180.0
O2' C1' C2 C3' 170.6 180.1
C2 C1' C3' H3'1 179.9 55.0
C2 C1' C3' H3'2 305.3 292.7
C2 C1' C3' H3'3 54.7 173.7
N3 C4 C5 S1 38.2 0.0
C5 S1 C2 C1' 174.2 180.0
C4 C5 S1 C5A 119.2 180.0
S1 C5 C4 C4A 222.1 180.0
S1 C5 C5A C5B 246.0 90.0
S1 C5 C5A H5A1 11.2 212.4
S1 C5 C5A H5A2 120.7 328.8
N3 C4 C5 C4A 176.1 180.0
S1 C5 C4 C5A 247.9 180.0
C4 C5 C5A C5B 132.0 270.0
C4 C5 C5A H5A1 257.2 32.4
C4 C5 C5A H5A2 6.7 148.7
C5 C4 C4A H4A1 355.0 307.0
C5 C4 C4A H4A2 120.3 67.5
C5 C4 C4A H4A3 229.8 186.5
S1 C5 C5A C4 114.0 180.0
C5A C5 C4 C4A 334.2 0.0
C5B C5A C5 H5A1 234.8 237.7
C5B C5A C5 H5A2 125.2 121.3
C5 C5A C5B O5G 206.6 61.7
C5 C5A C5B H5B1 331.9 179.9
C5 C5A C5B H5B2 81.3 300.8
H5A1 C5A C5 H5A2 250.5 243.6
N3 C4 C4A C5 185.0 180.0
C4A C4 C5 C5A 334.2 0.0
H4A1 C4A C4 H4A2 234.7 239.5
H4A1 C4A C4 H4A3 125.2 120.5
H4A2 C4A C4 H4A3 250.5 241.0
C4 C4A H4A1 H4A2 125.3 123.3
C4 C4A H4A1 H4A3 234.8 236.7
H4A2 C4A H4A1 H4A3 109.5 113.4
C4 C4A H4A2 H4A1 219.1 237.3
C4 C4A H4A2 H4A3 109.6 122.8
H4A1 C4A H4A2 H4A3 250.5 245.5
C4 C4A H4A3 H4A1 140.8 122.8
C4 C4A H4A3 H4A2 250.4 237.3
H4A1 C4A H4A3 H4A2 109.6 114.5
C5 C5A C5B H5A1 125.3 122.3
C5 C5A C5B H5A2 234.7 238.7
H5A1 C5A C5B H5A2 109.5 116.4
O5G C5B C5A H5B1 234.7 241.7
O5G C5B C5A H5B2 125.3 120.9
C5A C5B O5G P1 192.1 180.0
H5B1 C5B C5A H5B2 250.6 239.2
C5 C5A H5A1 C5B 244.3 235.8
C5 C5A H5A1 H5A2 122.2 117.9
C5B C5A H5A1 H5A2 237.9 242.1
H5A1 C5A C5B O5G 81.3 299.3
H5A1 C5A C5B H5B1 206.6 57.6
H5A1 C5A C5B H5B2 316.0 178.4
C5 C5A H5A2 C5B 115.7 123.6
C5 C5A H5A2 H5A1 237.8 241.8
C5B C5A H5A2 H5A1 122.1 118.3
H5A2 C5A C5B O5G 331.8 183.0
H5A2 C5A C5B H5B1 97.1 301.2
H5A2 C5A C5B H5B2 206.6 62.1
O5G C5B C5A H5A1 81.3 299.3
O5G C5B C5A H5A2 331.8 183.0
C5A C5B O5G H5B1 125.3 119.5
C5A C5B O5G H5B2 234.7 237.3
H5B1 C5B O5G H5B2 109.4 117.8
C5B O5G P1 O11 54.5 54.1
C5B O5G P1 O12 171.9 180.0
C5B O5G P1 O13 303.4 305.9
H5B1 C5B C5A H5A1 206.6 57.6
H5B1 C5B C5A H5A2 97.1 301.2
C5A C5B H5B1 O5G 223.5 240.5
C5A C5B H5B1 H5B2 111.8 122.7
O5G C5B H5B1 H5B2 248.3 242.2
H5B1 C5B O5G P1 66.8 60.5
H5B2 C5B C5A H5A1 316.0 178.4
H5B2 C5B C5A H5A2 206.6 62.1
C5A C5B H5B2 O5G 136.5 121.4
C5A C5B H5B2 H5B1 248.2 238.6
O5G C5B H5B2 H5B1 111.7 117.2
H5B2 C5B O5G P1 317.4 302.7
P1 O5G C5B H5B1 66.8 60.5
P1 O5G C5B H5B2 317.4 302.7
O11 P1 O5G O12 242.6 234.2
O11 P1 O5G O13 111.1 108.2
O5G P1 O11 P2 78.3 66.2
O12 P1 O5G O13 228.6 234.0
O5G P1 O11 O12 120.1 126.2
O5G P1 O11 O13 251.6 250.9
O12 P1 O11 O13 131.6 124.7
P1 O11 P2 O21 131.4 300.0
P1 O11 P2 O22 262.6 174.0
P1 O11 P2 O23 19.0 66.3
O5G P1 O12 O11 249.8 239.3
O5G P1 O12 O13 124.1 120.7
O11 P1 O12 O13 234.3 241.4
O12 P1 O11 P2 318.2 300.0
O5G P1 O13 O11 104.2 109.2
O5G P1 O13 O12 231.3 233.8
O11 P1 O13 O12 127.0 124.6
O13 P1 O11 P2 186.6 175.3
P2 O11 P1 O12 318.2 300.0
P2 O11 P1 O13 186.6 175.3
O21 P2 O11 O22 228.8 126.0
O21 P2 O11 O23 112.4 233.7
O22 P2 O11 O23 243.6 107.6
O11 P2 O22 H22O 180.1 174.1
O11 P2 O23 H23O 180.0 185.2
O11 P2 O21 O22 121.2 240.5
O11 P2 O21 O23 251.9 119.9
O22 P2 O21 O23 130.7 239.4
O21 P2 O22 H22O 301.9 48.5
O21 P2 O23 H23O 68.1 311.1
O11 P2 O22 O21 238.2 125.7
O11 P2 O22 O23 109.2 252.5
O21 P2 O22 O23 231.0 126.9
O22 P2 O23 H23O 291.8 77.9
O11 P2 O23 O21 111.9 234.1
O11 P2 O23 O22 248.1 107.3
O21 P2 O23 O22 136.2 233.2
O23 P2 O22 H22O 70.8 281.6
H22O O22 P2 O23 70.8 281.6
C2 C1' O2' C3' 189.3 179.9
O2' C1' C3' H3'1 8.9 235.0
O2' C1' C3' H3'2 134.2 112.6
O2' C1' C3' H3'3 243.7 353.6
C2 C1' C3' O2' 171.1 180.1
H3'1 C3' C1' H3'2 234.6 122.4
H3'1 C3' C1' H3'3 125.2 241.3
H3'2 C3' C1' H3'3 250.6 119.0
C1' C3' H3'1 H3'2 125.3 234.7
C1' C3' H3'1 H3'3 234.8 124.5
H3'2 C3' H3'1 H3'3 109.5 249.8
C1' C3' H3'2 H3'1 229.0 125.5
C1' C3' H3'2 H3'3 114.5 235.4
H3'1 C3' H3'2 H3'3 245.5 109.9
C1' C3' H3'3 H3'1 130.9 236.2
C1' C3' H3'3 H3'2 245.5 123.7
H3'1 C3' H3'3 H3'2 114.6 247.5