PDB Chemical Component HSM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HSM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.472 |
1.469 |
| N |
H1 |
1.020 |
1.008 |
| N |
H2 |
1.020 |
1.008 |
| CA |
CB |
1.522 |
1.529 |
| CA |
HA1 |
1.115 |
1.090 |
| CA |
HA2 |
1.115 |
1.090 |
| CB |
CG |
1.491 |
1.506 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.116 |
1.090 |
| CG |
ND1 |
1.376 |
1.340 |
| CG |
CD2 |
1.353 |
1.347 |
| ND1 |
CE1 |
1.313 |
1.305 |
| CD2 |
NE2 |
1.380 |
1.368 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE1 |
NE2 |
1.314 |
1.350 |
| CE1 |
HE1 |
1.103 |
1.080 |
| NE2 |
HE2 |
1.019 |
0.970 |
Bond Angles for HSM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H1 |
112.8 |
106.7 |
| CA |
N |
H2 |
111.0 |
106.7 |
| N |
CA |
CB |
112.8 |
109.5 |
| N |
CA |
HA1 |
110.9 |
109.4 |
| N |
CA |
HA2 |
110.9 |
109.5 |
| H1 |
N |
H2 |
111.0 |
106.8 |
| CB |
CA |
HA1 |
111.0 |
109.4 |
| CB |
CA |
HA2 |
111.0 |
109.5 |
| CA |
CB |
CG |
125.4 |
109.5 |
| CA |
CB |
HB1 |
106.6 |
109.4 |
| CA |
CB |
HB2 |
106.6 |
109.4 |
| HA1 |
CA |
HA2 |
99.4 |
109.4 |
| CG |
CB |
HB1 |
106.6 |
109.5 |
| CG |
CB |
HB2 |
106.6 |
109.5 |
| CB |
CG |
ND1 |
122.6 |
126.0 |
| CB |
CG |
CD2 |
132.9 |
126.0 |
| HB1 |
CB |
HB2 |
103.0 |
109.4 |
| ND1 |
CG |
CD2 |
104.5 |
108.0 |
| CG |
ND1 |
CE1 |
111.9 |
109.3 |
| CG |
CD2 |
NE2 |
107.2 |
106.8 |
| CG |
CD2 |
HD2 |
125.6 |
126.6 |
| ND1 |
CE1 |
NE2 |
106.5 |
108.7 |
| ND1 |
CE1 |
HE1 |
126.7 |
125.7 |
| NE2 |
CD2 |
HD2 |
127.2 |
126.6 |
| CD2 |
NE2 |
CE1 |
109.9 |
107.2 |
| CD2 |
NE2 |
HE2 |
127.1 |
126.4 |
| NE2 |
CE1 |
HE1 |
126.8 |
125.6 |
| CE1 |
NE2 |
HE2 |
123.0 |
126.3 |
Torsion Angles for HSM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
HA1 |
234.7 |
240.0 |
| CB |
CA |
N |
HA2 |
125.3 |
120.1 |
| N |
CA |
CB |
CG |
112.6 |
180.0 |
| N |
CA |
CB |
HB1 |
237.9 |
300.0 |
| N |
CA |
CB |
HB2 |
347.4 |
59.9 |
| HA1 |
CA |
N |
HA2 |
250.5 |
240.0 |
| CA |
N |
H1 |
H2 |
234.7 |
246.2 |
| H1 |
N |
CA |
CB |
180.0 |
293.8 |
| H1 |
N |
CA |
HA1 |
305.3 |
53.8 |
| H1 |
N |
CA |
HA2 |
54.7 |
173.7 |
| CA |
N |
H2 |
H1 |
126.3 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
180.0 |
| H2 |
N |
CA |
HA1 |
180.0 |
299.9 |
| H2 |
N |
CA |
HA2 |
289.4 |
59.9 |
| CB |
CA |
N |
H1 |
180.0 |
293.8 |
| CB |
CA |
N |
H2 |
54.7 |
180.0 |
| N |
CA |
CB |
HA1 |
125.2 |
120.0 |
| N |
CA |
CB |
HA2 |
234.8 |
239.9 |
| HA1 |
CA |
CB |
HA2 |
109.5 |
119.9 |
| CG |
CB |
CA |
HB1 |
234.7 |
240.0 |
| CG |
CB |
CA |
HB2 |
125.2 |
120.1 |
| CA |
CB |
CG |
ND1 |
255.1 |
299.6 |
| CA |
CB |
CG |
CD2 |
76.2 |
120.1 |
| HB1 |
CB |
CA |
HB2 |
250.6 |
240.1 |
| HA1 |
CA |
N |
H1 |
305.3 |
53.8 |
| HA1 |
CA |
N |
H2 |
180.0 |
299.9 |
| N |
CA |
HA1 |
CB |
233.7 |
240.0 |
| N |
CA |
HA1 |
HA2 |
116.8 |
120.0 |
| CB |
CA |
HA1 |
HA2 |
243.1 |
240.0 |
| HA1 |
CA |
CB |
CG |
347.4 |
60.0 |
| HA1 |
CA |
CB |
HB1 |
112.7 |
180.0 |
| HA1 |
CA |
CB |
HB2 |
222.1 |
300.0 |
| HA2 |
CA |
N |
H1 |
54.7 |
173.7 |
| HA2 |
CA |
N |
H2 |
289.4 |
59.9 |
| N |
CA |
HA2 |
CB |
126.3 |
120.1 |
| N |
CA |
HA2 |
HA1 |
243.2 |
240.0 |
| CB |
CA |
HA2 |
HA1 |
116.9 |
119.9 |
| HA2 |
CA |
CB |
CG |
237.8 |
300.1 |
| HA2 |
CA |
CB |
HB1 |
3.2 |
60.1 |
| HA2 |
CA |
CB |
HB2 |
112.6 |
180.0 |
| CG |
CB |
CA |
HA1 |
347.4 |
60.0 |
| CG |
CB |
CA |
HA2 |
237.8 |
300.1 |
| CA |
CB |
CG |
HB1 |
125.3 |
119.9 |
| CA |
CB |
CG |
HB2 |
234.8 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
109.5 |
120.0 |
| ND1 |
CG |
CB |
CD2 |
179.0 |
179.6 |
| CB |
CG |
ND1 |
CE1 |
180.0 |
180.0 |
| CB |
CG |
CD2 |
NE2 |
180.1 |
179.9 |
| CB |
CG |
CD2 |
HD2 |
0.1 |
359.8 |
| HB1 |
CB |
CA |
HA1 |
112.7 |
180.0 |
| HB1 |
CB |
CA |
HA2 |
3.2 |
60.1 |
| CA |
CB |
HB1 |
CG |
224.0 |
240.0 |
| CA |
CB |
HB1 |
HB2 |
112.0 |
119.9 |
| CG |
CB |
HB1 |
HB2 |
248.0 |
239.9 |
| HB1 |
CB |
CG |
ND1 |
129.8 |
179.7 |
| HB1 |
CB |
CG |
CD2 |
310.9 |
0.1 |
| HB2 |
CB |
CA |
HA1 |
222.1 |
300.0 |
| HB2 |
CB |
CA |
HA2 |
112.6 |
180.0 |
| CA |
CB |
HB2 |
CG |
136.0 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
248.0 |
240.1 |
| CG |
CB |
HB2 |
HB1 |
112.0 |
120.1 |
| HB2 |
CB |
CG |
ND1 |
20.4 |
59.7 |
| HB2 |
CB |
CG |
CD2 |
201.4 |
240.1 |
| ND1 |
CG |
CB |
HB1 |
129.8 |
179.7 |
| ND1 |
CG |
CB |
HB2 |
20.4 |
59.7 |
| CB |
CG |
ND1 |
CD2 |
180.8 |
180.4 |
| ND1 |
CG |
CD2 |
NE2 |
1.0 |
0.3 |
| ND1 |
CG |
CD2 |
HD2 |
181.0 |
180.1 |
| CG |
ND1 |
CE1 |
NE2 |
0.2 |
0.3 |
| CG |
ND1 |
CE1 |
HE1 |
180.1 |
180.2 |
| CD2 |
CG |
CB |
HB1 |
310.9 |
0.1 |
| CD2 |
CG |
CB |
HB2 |
201.4 |
240.1 |
| CB |
CG |
CD2 |
ND1 |
179.1 |
179.6 |
| CD2 |
CG |
ND1 |
CE1 |
359.2 |
359.6 |
| NE2 |
CD2 |
CG |
HD2 |
180.0 |
180.2 |
| CG |
CD2 |
NE2 |
CE1 |
359.0 |
359.9 |
| CG |
CD2 |
NE2 |
HE2 |
179.0 |
180.0 |
| CE1 |
ND1 |
CG |
CD2 |
359.2 |
359.6 |
| CD2 |
NE2 |
CE1 |
ND1 |
0.5 |
359.9 |
| NE2 |
CE1 |
ND1 |
HE1 |
180.0 |
180.2 |
| ND1 |
CE1 |
NE2 |
HE2 |
180.5 |
179.8 |
| CG |
CD2 |
NE2 |
HD2 |
180.0 |
179.8 |
| ND1 |
CE1 |
NE2 |
CD2 |
0.5 |
359.9 |
| CD2 |
NE2 |
CE1 |
HE1 |
180.5 |
180.0 |
| CE1 |
NE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CG |
CD2 |
HD2 |
NE2 |
180.0 |
180.2 |
| HD2 |
CD2 |
NE2 |
CE1 |
179.0 |
180.1 |
| HD2 |
CD2 |
NE2 |
HE2 |
359.0 |
0.1 |
| ND1 |
CE1 |
NE2 |
HE1 |
180.0 |
179.8 |
| CE1 |
NE2 |
CD2 |
HD2 |
179.0 |
180.1 |
| CD2 |
NE2 |
CE1 |
HE2 |
180.0 |
180.0 |
| ND1 |
CE1 |
HE1 |
NE2 |
180.0 |
180.2 |
| HE1 |
CE1 |
NE2 |
HE2 |
0.5 |
360.0 |
| HE2 |
NE2 |
CD2 |
HD2 |
359.0 |
0.1 |
| CD2 |
NE2 |
HE2 |
CE1 |
180.0 |
179.9 |
| HE2 |
NE2 |
CE1 |
HE1 |
0.5 |
360.0 |