PDB Chemical Component HSJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HSJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1A C2A 1.546 1.530
C2A C3A 1.553 1.530
C3A C4A 1.552 1.531
C4A C5A 1.554 1.530
C5A C6A 1.552 1.530
C6A C7 1.556 1.530
C7 C8 1.547 1.530
C8 O1 1.443 1.430
O1 C1 1.447 1.429
C1 O5 1.451 1.429
O5 C5 1.446 1.429
C5 C6 1.558 1.530
C6 O6 1.424 1.429
C5 C4 1.560 1.531
C4 O4 1.423 1.429
C4 C3 1.552 1.532
C3 O3 1.427 1.428
C3 C2 1.549 1.533
C1 C2 1.553 1.531
C2 O2 1.423 1.429
C1A H1A 1.100 1.090
C1A H2A 1.100 1.091
C1A H3A 1.100 1.090
C2A H4A 1.100 1.090
C2A H5A 1.100 1.091
C3A H6 1.100 1.091
C3A H7 1.100 1.090
C4A H8 1.101 1.090
C4A H9 1.100 1.090
C5A H10 1.100 1.091
C5A H11 1.101 1.090
C6A H12 1.100 1.091
C6A H13 1.101 1.090
C7 H14 1.100 1.091
C7 H15 1.100 1.090
C8 H16 1.100 1.091
C8 H17 1.100 1.090
C1 H1 1.100 1.090
C5 H5 1.100 1.089
C6 H61 1.100 1.090
C6 H62 1.100 1.090
O6 HO6 0.950 0.967
C4 H4 1.100 1.090
O4 HO4 0.950 0.967
C3 H3 1.100 1.089
O3 HO3 0.950 0.967
C2 H2 1.100 1.090
O2 HO2 0.950 0.967

Bond Angles for HSJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1A C2A C3A 112.5 109.5
C2A C1A H1A 109.5 109.4
C2A C1A H2A 109.5 109.5
C2A C1A H3A 109.4 109.5
C1A C2A H4A 108.5 109.5
C1A C2A H5A 107.8 109.4
C2A C3A C4A 113.3 109.4
C3A C2A H4A 108.5 109.5
C3A C2A H5A 107.8 109.5
C2A C3A H6 108.2 109.5
C2A C3A H7 107.4 109.5
C3A C4A C5A 112.0 109.4
C4A C3A H6 108.2 109.5
C4A C3A H7 107.3 109.5
C3A C4A H8 108.6 109.4
C3A C4A H9 108.1 109.5
C4A C5A C6A 113.2 109.5
C5A C4A H8 108.6 109.5
C5A C4A H9 108.1 109.5
C4A C5A H10 108.2 109.5
C4A C5A H11 107.4 109.5
C5A C6A C7 112.7 109.5
C6A C5A H10 108.3 109.4
C6A C5A H11 107.4 109.5
C5A C6A H12 108.4 109.4
C5A C6A H13 107.7 109.5
C6A C7 C8 112.8 109.5
C7 C6A H12 108.4 109.5
C7 C6A H13 107.7 109.5
C6A C7 H14 108.4 109.4
C6A C7 H15 107.6 109.5
C7 C8 O1 109.8 109.5
C8 C7 H14 108.4 109.5
C8 C7 H15 107.6 109.5
C7 C8 H16 109.4 109.5
C7 C8 H17 109.3 109.6
C8 O1 C1 114.6 114.0
O1 C8 H16 109.3 109.4
O1 C8 H17 109.3 109.5
O1 C1 O5 112.8 109.5
O1 C1 C2 111.3 109.4
O1 C1 H1 106.4 109.5
C1 O5 C5 118.1 114.1
O5 C1 C2 110.9 109.4
O5 C1 H1 106.8 109.5
O5 C5 C6 112.3 109.5
O5 C5 C4 110.5 109.4
O5 C5 H5 109.7 109.5
C5 C6 O6 112.4 109.4
C6 C5 C4 116.7 109.5
C6 C5 H5 102.4 109.5
C5 C6 H61 108.5 109.5
C5 C6 H62 107.9 109.5
O6 C6 H61 108.5 109.5
O6 C6 H62 107.8 109.5
C6 O6 HO6 109.5 114.0
C5 C4 O4 111.3 109.6
C5 C4 C3 112.5 109.2
C4 C5 H5 104.5 109.5
C5 C4 H4 106.0 109.5
O4 C4 C3 109.2 109.5
O4 C4 H4 109.4 109.5
C4 O4 HO4 109.5 114.0
C4 C3 O3 109.6 109.6
C4 C3 C2 111.0 109.0
C3 C4 H4 108.2 109.5
C4 C3 H3 109.0 109.5
O3 C3 C2 111.3 109.5
O3 C3 H3 108.7 109.6
C3 O3 HO3 109.5 114.0
C1 C2 C3 112.2 109.1
C3 C2 O2 110.1 109.5
C2 C3 H3 107.2 109.6
C3 C2 H2 107.1 109.5
C1 C2 O2 109.0 109.5
C2 C1 H1 108.4 109.5
C1 C2 H2 108.2 109.5
O2 C2 H2 110.4 109.6
C2 O2 HO2 109.5 114.0
H1A C1A H2A 109.5 109.5
H1A C1A H3A 109.5 109.5
H2A C1A H3A 109.5 109.4
H4A C2A H5A 111.9 109.5
H6 C3A H7 112.5 109.5
H8 C4A H9 111.5 109.5
H10 C5A H11 112.4 109.5
H12 C6A H13 112.0 109.4
H14 C7 H15 112.1 109.5
H16 C8 H17 109.7 109.4
H61 C6 H62 111.8 109.5

Torsion Angles for HSJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1A C2A C3A C4A 178.6 180.0
C3A C2A C1A H4A 240.0 240.0
C3A C2A C1A H5A 118.7 120.0
C1A C2A C3A H6 298.7 300.0
C1A C2A C3A H7 60.3 60.0
H1A C1A C2A H2A 240.0 240.0
H1A C1A C2A H3A 120.0 120.0
H2A C1A C2A H3A 240.0 240.0
H4A C2A C1A H5A 238.7 240.0
C3A C2A C1A H1A 48.4 300.0
C3A C2A C1A H2A 168.4 60.0
C3A C2A C1A H3A 288.4 180.0
C1A C2A C3A H4A 120.0 120.0
C1A C2A C3A H5A 241.3 240.0
C2A C3A C4A C5A 181.8 180.0
C4A C3A C2A H6 240.0 240.0
C4A C3A C2A H7 118.3 120.0
C2A C3A C4A H8 301.8 300.0
C2A C3A C4A H9 62.9 60.0
H4A C2A C3A H5A 121.3 120.0
H6 C3A C2A H7 238.4 240.0
C4A C3A C2A H4A 58.6 60.0
C4A C3A C2A H5A 297.3 300.0
C2A C3A C4A H6 120.0 120.0
C2A C3A C4A H7 241.7 240.0
C3A C4A C5A C6A 180.8 180.0
C5A C4A C3A H8 240.0 240.0
C5A C4A C3A H9 118.9 120.0
C3A C4A C5A H10 300.8 300.0
C3A C4A C5A H11 62.4 60.0
H6 C3A C4A H7 121.6 120.0
H8 C4A C3A H9 238.9 240.0
C5A C4A C3A H6 61.8 60.0
C5A C4A C3A H7 300.1 300.0
C3A C4A C5A H8 120.0 120.0
C3A C4A C5A H9 241.1 240.0
C4A C5A C6A C7 176.4 180.0
C6A C5A C4A H10 240.0 240.0
C6A C5A C4A H11 118.4 120.0
C4A C5A C6A H12 296.4 300.0
C4A C5A C6A H13 57.8 59.9
H8 C4A C5A H9 121.1 120.0
H10 C5A C4A H11 238.4 240.0
C6A C5A C4A H8 60.8 60.0
C6A C5A C4A H9 299.7 300.0
C4A C5A C6A H10 120.0 120.0
C4A C5A C6A H11 241.6 240.0
C5A C6A C7 C8 185.3 180.0
C7 C6A C5A H12 240.0 240.0
C7 C6A C5A H13 118.6 120.1
C5A C6A C7 H14 305.3 300.0
C5A C6A C7 H15 66.8 60.0
H10 C5A C6A H11 121.6 120.0
H12 C6A C5A H13 238.6 240.1
C7 C6A C5A H10 56.4 60.0
C7 C6A C5A H11 294.8 300.0
C5A C6A C7 H12 120.0 120.0
C5A C6A C7 H13 241.4 239.9
C6A C7 C8 O1 170.6 180.0
C8 C7 C6A H14 240.0 240.0
C8 C7 C6A H15 118.5 120.0
C6A C7 C8 H16 290.6 299.9
C6A C7 C8 H17 50.7 59.9
H12 C6A C7 H13 121.3 120.0
H14 C7 C6A H15 238.5 240.0
C8 C7 C6A H12 65.3 60.1
C8 C7 C6A H13 304.0 300.1
C6A C7 C8 H14 120.0 119.9
C6A C7 C8 H15 241.4 240.0
C7 C8 O1 C1 189.1 179.9
O1 C8 C7 H16 240.0 240.0
O1 C8 C7 H17 119.9 120.0
H14 C7 C8 H15 121.5 120.0
H16 C8 C7 H17 239.9 240.0
O1 C8 C7 H14 50.6 60.0
O1 C8 C7 H15 289.1 300.0
C7 C8 O1 H16 120.0 120.0
C7 C8 O1 H17 240.1 239.9
C8 O1 C1 O5 66.5 70.0
C8 O1 C1 C2 191.9 189.9
C8 O1 C1 H1 309.8 309.9
H16 C8 O1 H17 120.1 119.9
C1 O1 C8 H16 69.1 60.0
C1 O1 C8 H17 308.9 300.0
O1 C1 O5 C5 71.0 181.1
O5 C1 O1 C2 234.6 240.1
O5 C1 O1 H1 116.7 120.1
O1 C1 C2 C3 284.2 182.4
O1 C1 C2 O2 46.4 302.3
C2 C1 O1 H1 242.1 240.0
O1 C1 C2 H2 166.4 62.6
O1 C1 O5 C2 125.6 119.9
O1 C1 O5 H1 243.5 239.9
C1 O5 C5 C6 281.9 178.9
C1 O5 C5 C4 54.1 298.8
C1 O5 C5 H5 168.8 58.8
O5 C1 C2 C3 50.7 302.3
O5 C1 C2 O2 172.8 62.3
C2 C1 O5 H1 117.9 120.0
O5 C1 C2 H2 292.8 182.5
C5 O5 C1 C2 305.4 61.2
C5 O5 C1 H1 187.5 301.2
O5 C5 C6 O6 191.4 295.0
C6 C5 O5 C4 227.8 240.1
C6 C5 O5 H5 113.1 120.1
O5 C5 C6 H61 311.4 55.0
O5 C5 C6 H62 72.7 175.0
O5 C5 C4 O4 186.8 297.8
O5 C5 C4 C3 309.9 57.7
C4 C5 O5 H5 245.3 240.0
O5 C5 C4 H4 67.9 177.6
O5 C5 C6 C4 129.0 119.9
O5 C5 C6 H5 242.4 239.9
O6 C6 C5 H61 240.0 240.0
O6 C6 C5 H62 118.7 120.0
C5 C6 O6 HO6 351.2 180.0
C6 C5 C4 O4 316.7 57.7
C6 C5 C4 C3 79.7 177.6
C4 C5 C6 H5 113.4 120.0
C6 C5 C4 H4 197.8 297.5
H61 C6 C5 H62 238.7 240.0
O6 C6 C5 C4 62.4 175.1
O6 C6 C5 H5 309.0 55.0
C5 C6 O6 H61 120.0 120.0
C5 C6 O6 H62 241.3 240.0
H61 C6 O6 H62 121.3 120.0
O5 C5 C4 C6 230.1 240.1
O5 C5 C4 H5 117.9 120.0
C4 C5 C6 O6 62.4 175.1
C6 C5 C4 H5 247.8 240.0
C4 C5 C6 H61 182.3 295.1
C4 C5 C6 H62 303.6 55.1
O4 C4 C5 C3 237.0 240.1
O4 C4 C5 H4 118.9 120.2
C5 C4 O4 HO4 220.9 180.1
C5 C4 C3 O3 286.6 183.2
C5 C4 C3 C2 49.9 303.0
C3 C4 C5 H4 242.0 240.1
C5 C4 C3 H3 167.8 62.9
C5 C4 O4 C3 124.9 119.7
O4 C4 C5 H5 68.9 177.7
C5 C4 O4 H4 243.2 239.8
O4 C4 C3 O3 50.8 303.1
O4 C4 C3 C2 174.1 62.9
C3 C4 O4 H4 118.3 120.1
O4 C4 C3 H3 292.0 182.9
C5 C4 C3 O4 235.8 240.1
C3 C4 C5 H5 191.9 297.6
C5 C4 C3 H4 116.7 120.0
O4 C4 C3 H4 240.9 239.9
C3 C4 O4 HO4 96.0 60.3
O3 C3 C4 C2 236.7 240.2
O3 C3 C4 H3 118.8 120.2
C4 C3 O3 HO3 288.8 180.0
C1 C2 C3 C4 309.9 57.0
C4 C3 C2 O2 188.4 297.1
C2 C3 C4 H3 242.1 240.1
C4 C3 C2 H2 68.5 176.9
C4 C3 O3 C2 123.2 119.5
O3 C3 C4 H4 169.9 63.2
C4 C3 O3 H3 241.0 239.8
C1 C2 C3 O3 72.3 176.8
O3 C3 C2 O2 310.8 56.9
C2 C3 O3 H3 117.8 120.3
O3 C3 C2 H2 190.8 296.7
C4 C3 C2 O3 237.6 240.1
C2 C3 C4 H4 293.2 183.0
C4 C3 C2 H3 118.9 119.9
O3 C3 C2 H3 241.3 239.7
C2 C3 O3 HO3 165.7 60.5
C1 C2 C3 O2 121.5 119.9
C3 C2 C1 H1 167.6 62.3
C1 C2 C3 H2 241.5 240.1
O2 C2 C3 H2 120.0 120.2
C3 C2 O2 HO2 300.3 179.7
O1 C1 C2 O5 233.6 240.1
O1 C1 C2 H1 116.6 120.1
C2 C1 O5 C5 305.4 61.2
O5 C1 C2 H1 243.1 240.0
C4 C3 C2 C1 309.9 57.0
O3 C3 C2 C1 72.3 176.8
C3 C2 C1 O2 237.9 240.1
C1 C2 C3 H3 191.0 297.1
C3 C2 C1 H2 117.9 119.8
O2 C2 C1 H2 240.0 239.7
C1 C2 O2 HO2 176.9 60.0
C1 C2 O2 C3 236.6 240.3
O2 C2 C3 H3 69.5 177.2
C3 C2 O2 H2 242.1 239.9
O2 C2 C1 H1 289.7 182.3
C1 C2 O2 H2 118.6 120.2
H1A C1A C2A C3A 48.4 300.0
C2A C1A H1A H2A 120.0 120.0
C2A C1A H1A H3A 240.0 240.0
H1A C1A C2A H4A 168.4 60.0
H1A C1A C2A H5A 289.7 180.0
H2A C1A H1A H3A 120.0 120.0
H2A C1A C2A C3A 168.4 60.0
C2A C1A H2A H1A 240.0 240.0
C2A C1A H2A H3A 120.0 120.0
H2A C1A C2A H4A 288.4 180.0
H2A C1A C2A H5A 49.7 300.0
H1A C1A H2A H3A 240.0 240.0
H3A C1A C2A C3A 288.4 180.0
C2A C1A H3A H1A 120.0 120.0
C2A C1A H3A H2A 240.0 240.0
H3A C1A C2A H4A 48.4 300.0
H3A C1A C2A H5A 169.7 60.0
H1A C1A H3A H2A 120.0 120.0
C1A C2A H4A C3A 237.5 240.0
H4A C2A C1A H1A 168.4 60.0
H4A C2A C1A H2A 288.4 180.0
H4A C2A C1A H3A 48.4 300.0
C1A C2A H4A H5A 118.8 120.0
H4A C2A C3A C4A 58.6 60.0
C3A C2A H4A H5A 241.3 240.0
H4A C2A C3A H6 178.6 180.0
H4A C2A C3A H7 300.3 300.0
C1A C2A H5A C3A 121.7 120.0
H5A C2A C1A H1A 289.7 180.0
H5A C2A C1A H2A 49.7 300.0
H5A C2A C1A H3A 169.7 60.0
C1A C2A H5A H4A 240.8 240.0
H5A C2A C3A C4A 297.3 300.0
C3A C2A H5A H4A 119.1 120.0
H5A C2A C3A H6 57.4 60.0
H5A C2A C3A H7 179.0 180.0
C2A C3A H6 C4A 236.9 240.0
H6 C3A C2A H4A 178.6 180.0
H6 C3A C2A H5A 57.4 60.0
C2A C3A H6 H7 118.4 120.0
H6 C3A C4A C5A 61.8 60.0
C4A C3A H6 H7 241.6 240.0
H6 C3A C4A H8 181.8 180.0
H6 C3A C4A H9 302.8 300.0
C2A C3A H7 C4A 122.1 120.0
H7 C3A C2A H4A 300.3 300.0
H7 C3A C2A H5A 179.0 180.0
C2A C3A H7 H6 241.1 240.0
H7 C3A C4A C5A 300.1 300.0
C4A C3A H7 H6 118.9 120.0
H7 C3A C4A H8 60.1 60.0
H7 C3A C4A H9 181.2 180.0
C3A C4A H8 C5A 237.9 240.0
H8 C4A C3A H6 181.8 180.0
H8 C4A C3A H7 60.1 60.0
C3A C4A H8 H9 119.0 120.0
H8 C4A C5A C6A 60.8 60.0
C5A C4A H8 H9 241.0 240.0
H8 C4A C5A H10 180.8 180.0
H8 C4A C5A H11 302.4 300.0
C3A C4A H9 C5A 121.4 120.0
H9 C4A C3A H6 302.8 300.0
H9 C4A C3A H7 181.2 180.0
C3A C4A H9 H8 240.7 240.0
H9 C4A C5A C6A 299.7 300.0
C5A C4A H9 H8 119.3 120.0
H9 C4A C5A H10 59.7 60.0
H9 C4A C5A H11 181.3 180.0
C4A C5A H10 C6A 236.9 240.0
H10 C5A C4A H8 180.8 180.0
H10 C5A C4A H9 59.7 60.0
C4A C5A H10 H11 118.5 120.0
H10 C5A C6A C7 56.4 60.0
C6A C5A H10 H11 241.5 240.0
H10 C5A C6A H12 176.4 180.0
H10 C5A C6A H13 297.8 299.9
C4A C5A H11 C6A 122.0 120.0
H11 C5A C4A H8 302.4 300.0
H11 C5A C4A H9 181.3 180.0
C4A C5A H11 H10 241.0 240.0
H11 C5A C6A C7 294.8 300.0
C6A C5A H11 H10 119.0 119.9
H11 C5A C6A H12 54.8 60.0
H11 C5A C6A H13 176.2 179.9
C5A C6A H12 C7 237.4 240.0
H12 C6A C5A H10 176.4 180.0
H12 C6A C5A H11 54.8 60.0
C5A C6A H12 H13 118.7 120.0
H12 C6A C7 C8 65.3 60.1
C7 C6A H12 H13 241.3 240.0
H12 C6A C7 H14 185.3 180.0
H12 C6A C7 H15 306.8 300.0
C5A C6A H13 C7 121.8 120.1
H13 C6A C5A H10 297.8 299.9
H13 C6A C5A H11 176.2 179.9
C5A C6A H13 H12 240.8 240.1
H13 C6A C7 C8 304.0 300.1
C7 C6A H13 H12 119.1 120.0
H13 C6A C7 H14 64.0 60.1
H13 C6A C7 H15 185.5 180.1
C6A C7 H14 C8 237.3 240.0
H14 C7 C6A H12 185.3 180.0
H14 C7 C6A H13 64.0 60.1
C6A C7 H14 H15 118.7 120.0
H14 C7 C8 O1 50.6 60.0
C8 C7 H14 H15 241.4 240.0
H14 C7 C8 H16 170.6 180.0
H14 C7 C8 H17 290.7 300.0
C6A C7 H15 C8 121.8 120.0
H15 C7 C6A H12 306.8 300.0
H15 C7 C6A H13 185.5 180.1
C6A C7 H15 H14 240.9 240.0
H15 C7 C8 O1 289.1 300.0
C8 C7 H15 H14 119.1 120.0
H15 C7 C8 H16 49.1 60.0
H15 C7 C8 H17 169.3 180.0
C7 C8 H16 O1 239.7 240.0
H16 C8 C7 H14 170.6 180.0
H16 C8 C7 H15 49.1 60.0
C7 C8 H16 H17 119.8 120.1
H16 C8 O1 C1 69.1 60.0
O1 C8 H16 H17 240.1 240.1
C7 C8 H17 O1 120.2 120.0
H17 C8 C7 H14 290.7 300.0
H17 C8 C7 H15 169.3 180.0
C7 C8 H17 H16 240.1 240.0
H17 C8 O1 C1 308.9 300.0
O1 C8 H17 H16 119.9 119.9
O1 C1 H1 O5 120.7 120.0
O1 C1 H1 C2 240.3 240.0
H1 C1 O5 C5 187.5 301.2
O5 C1 H1 C2 119.6 120.0
H1 C1 C2 C3 167.6 62.3
H1 C1 C2 O2 289.7 182.3
H1 C1 C2 H2 49.7 302.5
O5 C5 H5 C6 119.4 120.0
O5 C5 H5 C4 241.5 240.0
H5 C5 C6 O6 309.0 55.0
C6 C5 H5 C4 122.1 120.0
H5 C5 C6 H61 68.9 175.0
H5 C5 C6 H62 190.2 295.0
H5 C5 C4 O4 68.9 177.7
H5 C5 C4 C3 191.9 297.6
H5 C5 C4 H4 310.0 57.6
C5 C6 H61 O6 237.6 240.0
H61 C6 C5 C4 182.3 295.1
H61 C6 C5 H5 68.9 175.0
C5 C6 H61 H62 118.8 120.0
O6 C6 H61 H62 241.2 240.0
H61 C6 O6 HO6 231.2 59.9
C5 C6 H62 O6 121.6 120.0
H62 C6 C5 C4 303.6 55.1
H62 C6 C5 H5 190.2 295.0
C5 C6 H62 H61 240.8 239.9
O6 C6 H62 H61 119.2 120.0
H62 C6 O6 HO6 109.9 300.0
HO6 O6 C6 H61 231.2 59.9
HO6 O6 C6 H62 109.9 300.0
C5 C4 H4 O4 120.2 120.2
C5 C4 H4 C3 239.1 240.3
H4 C4 C5 H5 310.0 57.6
O4 C4 H4 C3 118.9 120.1
H4 C4 O4 HO4 337.7 300.2
H4 C4 C3 O3 169.9 63.2
H4 C4 C3 C2 293.2 183.0
H4 C4 C3 H3 51.1 303.0
HO4 O4 C4 C3 96.0 60.3
HO4 O4 C4 H4 337.7 300.2
C4 C3 H3 O3 119.4 120.2
C4 C3 H3 C2 239.7 240.5
H3 C3 C4 H4 51.1 303.0
O3 C3 H3 C2 120.4 120.2
H3 C3 O3 HO3 47.8 300.2
H3 C3 C2 O2 69.5 177.2
H3 C3 C2 H2 309.5 57.0
HO3 O3 C3 C2 165.7 60.5
HO3 O3 C3 H3 47.8 300.2
C1 C2 H2 C3 121.1 119.6
C3 C2 H2 O2 119.8 120.1
H2 C2 C3 H3 309.5 57.0
C1 C2 H2 O2 240.9 239.8
H2 C2 C1 H1 49.7 302.5
H2 C2 O2 HO2 58.2 299.8
HO2 O2 C2 H2 58.2 299.8