PDB Chemical Component HS9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HS9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
H |
1.000 |
1.010 |
| N |
CA |
1.491 |
1.469 |
| N |
CM |
1.209 |
1.470 |
| CA |
C |
1.544 |
1.507 |
| CA |
CB |
1.574 |
1.530 |
| C |
O |
1.233 |
1.213 |
| C |
NXT |
1.238 |
1.348 |
| CB |
CG |
1.512 |
1.507 |
| CG |
ND1 |
1.389 |
1.341 |
| CG |
CD2 |
1.359 |
1.347 |
| ND1 |
CE1 |
1.325 |
1.305 |
| CD2 |
NE2 |
1.382 |
1.368 |
| CE1 |
NE2 |
1.325 |
1.351 |
| CA |
HA |
1.100 |
1.090 |
| CM |
HM1C |
1.100 |
1.090 |
| CM |
HM2C |
1.100 |
1.090 |
| CM |
HM3C |
1.100 |
1.090 |
| CB |
HB1C |
1.100 |
1.090 |
| CB |
HB2C |
1.101 |
1.090 |
| NXT |
HXT1 |
1.000 |
0.970 |
| NXT |
HXT2 |
1.000 |
0.969 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
HE1 |
1.080 |
1.080 |
| NE2 |
HE2 |
1.000 |
0.970 |
Bond Angles for HS9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
106.3 |
111.0 |
| CM |
N |
H |
106.4 |
111.0 |
| CA |
N |
CM |
119.1 |
111.0 |
| N |
CA |
C |
106.8 |
109.5 |
| N |
CA |
CB |
110.2 |
109.5 |
| N |
CA |
HA |
111.8 |
109.5 |
| N |
CM |
HM1C |
109.5 |
109.4 |
| N |
CM |
HM2C |
109.5 |
109.4 |
| N |
CM |
HM3C |
109.5 |
109.4 |
| CB |
CA |
C |
112.5 |
109.5 |
| CA |
C |
O |
121.9 |
120.0 |
| CA |
C |
NXT |
121.0 |
120.0 |
| C |
CA |
HA |
109.5 |
109.5 |
| CA |
CB |
CG |
115.4 |
109.5 |
| CB |
CA |
HA |
106.1 |
109.5 |
| CA |
CB |
HB1C |
107.6 |
109.5 |
| CA |
CB |
HB2C |
106.2 |
109.5 |
| O |
C |
NXT |
117.0 |
120.0 |
| C |
NXT |
HXT1 |
109.7 |
120.0 |
| C |
NXT |
HXT2 |
125.2 |
120.0 |
| CB |
CG |
ND1 |
123.4 |
126.0 |
| CB |
CG |
CD2 |
130.8 |
126.0 |
| CG |
CB |
HB1C |
107.5 |
109.4 |
| CG |
CB |
HB2C |
106.2 |
109.4 |
| ND1 |
CG |
CD2 |
105.8 |
108.0 |
| CG |
ND1 |
CE1 |
109.7 |
109.3 |
| CG |
CD2 |
NE2 |
107.3 |
106.8 |
| CG |
CD2 |
HD2 |
126.4 |
126.6 |
| ND1 |
CE1 |
NE2 |
108.2 |
108.7 |
| ND1 |
CE1 |
HE1 |
125.9 |
125.6 |
| CD2 |
NE2 |
CE1 |
109.1 |
107.2 |
| NE2 |
CD2 |
HD2 |
126.4 |
126.6 |
| CD2 |
NE2 |
HE2 |
125.4 |
126.5 |
| NE2 |
CE1 |
HE1 |
125.9 |
125.7 |
| CE1 |
NE2 |
HE2 |
125.5 |
126.3 |
| HM1C |
CM |
HM2C |
109.4 |
109.6 |
| HM1C |
CM |
HM3C |
109.5 |
109.5 |
| HM2C |
CM |
HM3C |
109.5 |
109.5 |
| HB1C |
CB |
HB2C |
114.2 |
109.5 |
| HXT1 |
NXT |
HXT2 |
125.1 |
120.0 |
Torsion Angles for HS9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
CM |
232.1 |
236.1 |
| H |
N |
CA |
C |
182.8 |
38.9 |
| H |
N |
CA |
CB |
60.3 |
278.9 |
| H |
N |
CA |
HA |
302.6 |
159.0 |
| H |
N |
CM |
HM1C |
136.1 |
56.0 |
| H |
N |
CM |
HM2C |
256.0 |
176.1 |
| H |
N |
CM |
HM3C |
16.0 |
296.1 |
| CM |
N |
CA |
H |
240.0 |
236.1 |
| CA |
N |
CM |
HM1C |
256.0 |
179.9 |
| CA |
N |
CM |
HM2C |
16.0 |
300.0 |
| CA |
N |
CM |
HM3C |
136.0 |
60.0 |
| CB |
CA |
N |
C |
237.5 |
240.0 |
| N |
CA |
C |
O |
256.4 |
0.0 |
| N |
CA |
C |
NXT |
73.5 |
180.0 |
| C |
CA |
N |
HA |
240.2 |
240.0 |
| N |
CA |
CB |
CG |
178.6 |
295.0 |
| CB |
CA |
N |
HA |
117.7 |
120.0 |
| N |
CA |
CB |
HB1C |
298.6 |
55.0 |
| N |
CA |
CB |
HB2C |
61.3 |
175.0 |
| CA |
N |
CM |
H |
120.0 |
123.9 |
| CM |
N |
CA |
C |
62.7 |
275.0 |
| CM |
N |
CA |
CB |
300.3 |
155.0 |
| CM |
N |
CA |
HA |
182.6 |
35.0 |
| HM1C |
CM |
N |
HM2C |
240.1 |
239.9 |
| HM1C |
CM |
N |
HM3C |
120.0 |
119.9 |
| HM2C |
CM |
N |
HM3C |
240.0 |
240.0 |
| C |
CA |
N |
H |
182.8 |
38.9 |
| C |
CA |
N |
CM |
62.7 |
275.0 |
| N |
CA |
C |
CB |
238.9 |
240.0 |
| N |
CA |
C |
HA |
121.3 |
120.0 |
| C |
CA |
CB |
CG |
59.5 |
175.0 |
| CB |
CA |
C |
HA |
242.3 |
240.0 |
| C |
CA |
CB |
HB1C |
179.5 |
295.0 |
| C |
CA |
CB |
HB2C |
302.2 |
55.0 |
| O |
C |
CA |
NXT |
182.9 |
180.0 |
| CA |
C |
NXT |
HXT1 |
1.5 |
0.0 |
| CA |
C |
NXT |
HXT2 |
181.5 |
180.0 |
| CB |
CA |
N |
H |
60.3 |
278.9 |
| CB |
CA |
N |
CM |
300.3 |
155.0 |
| N |
CA |
CB |
C |
119.1 |
120.0 |
| N |
CA |
CB |
HA |
238.8 |
240.0 |
| CB |
CA |
C |
O |
17.5 |
120.0 |
| CB |
CA |
C |
NXT |
194.6 |
300.0 |
| C |
CA |
CB |
HA |
119.7 |
120.0 |
| CA |
CB |
CG |
ND1 |
33.6 |
305.1 |
| CA |
CB |
CG |
CD2 |
213.9 |
124.7 |
| CG |
CB |
CA |
HB1C |
240.0 |
240.0 |
| CG |
CB |
CA |
HB2C |
117.3 |
120.0 |
| HB1C |
CB |
CA |
HB2C |
237.3 |
240.0 |
| CA |
C |
O |
NXT |
177.3 |
180.0 |
| O |
C |
CA |
HA |
135.1 |
240.0 |
| O |
C |
NXT |
HXT1 |
178.8 |
180.0 |
| O |
C |
NXT |
HXT2 |
358.7 |
360.0 |
| CA |
C |
NXT |
O |
182.7 |
180.0 |
| NXT |
C |
CA |
HA |
312.3 |
60.0 |
| HXT1 |
NXT |
C |
HXT2 |
180.0 |
180.0 |
| CG |
CB |
CA |
C |
59.5 |
175.0 |
| CG |
CB |
CA |
HA |
299.8 |
55.0 |
| CA |
CB |
CG |
HB1C |
120.0 |
120.0 |
| CA |
CB |
CG |
HB2C |
242.7 |
240.0 |
| ND1 |
CG |
CB |
CD2 |
179.7 |
180.4 |
| CB |
CG |
ND1 |
CE1 |
180.3 |
180.0 |
| CB |
CG |
CD2 |
NE2 |
179.9 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
359.9 |
0.1 |
| HB1C |
CB |
CG |
HB2C |
122.7 |
120.0 |
| CB |
CG |
ND1 |
CD2 |
180.3 |
179.7 |
| ND1 |
CG |
CB |
HB1C |
273.6 |
185.1 |
| ND1 |
CG |
CB |
HB2C |
150.9 |
65.1 |
| ND1 |
CG |
CD2 |
NE2 |
0.2 |
359.7 |
| ND1 |
CG |
CD2 |
HD2 |
180.2 |
179.8 |
| CG |
ND1 |
CE1 |
NE2 |
359.6 |
359.8 |
| CG |
ND1 |
CE1 |
HE1 |
179.6 |
180.0 |
| CB |
CG |
CD2 |
ND1 |
179.7 |
180.3 |
| CD2 |
CG |
CB |
HB1C |
93.9 |
4.7 |
| CD2 |
CG |
CB |
HB2C |
331.3 |
244.7 |
| CD2 |
CG |
ND1 |
CE1 |
0.1 |
0.3 |
| CG |
CD2 |
NE2 |
CE1 |
359.5 |
0.2 |
| NE2 |
CD2 |
CG |
HD2 |
180.0 |
179.9 |
| CG |
CD2 |
NE2 |
HE2 |
179.5 |
180.0 |
| CE1 |
ND1 |
CG |
CD2 |
0.1 |
0.3 |
| CD2 |
NE2 |
CE1 |
ND1 |
0.5 |
360.0 |
| NE2 |
CE1 |
ND1 |
HE1 |
180.0 |
179.9 |
| ND1 |
CE1 |
NE2 |
HE2 |
180.5 |
180.2 |
| CG |
CD2 |
NE2 |
HD2 |
180.0 |
180.1 |
| ND1 |
CE1 |
NE2 |
CD2 |
0.5 |
360.0 |
| CD2 |
NE2 |
CE1 |
HE1 |
180.5 |
179.8 |
| CE1 |
NE2 |
CD2 |
HE2 |
180.0 |
180.2 |
| ND1 |
CE1 |
NE2 |
HE1 |
180.0 |
180.1 |
| CE1 |
NE2 |
CD2 |
HD2 |
179.6 |
180.1 |
| CD2 |
NE2 |
CE1 |
HE2 |
180.0 |
179.8 |
| HA |
CA |
N |
H |
302.6 |
159.0 |
| HA |
CA |
N |
CM |
182.6 |
35.0 |
| N |
CA |
HA |
C |
241.8 |
240.0 |
| N |
CA |
HA |
CB |
120.2 |
120.0 |
| CB |
CA |
HA |
C |
121.6 |
120.0 |
| HA |
CA |
C |
O |
135.1 |
240.0 |
| HA |
CA |
C |
NXT |
312.3 |
60.0 |
| HA |
CA |
CB |
CG |
299.8 |
55.0 |
| HA |
CA |
CB |
HB1C |
59.8 |
175.0 |
| HA |
CA |
CB |
HB2C |
182.5 |
295.0 |
| HM1C |
CM |
N |
H |
136.1 |
56.0 |
| N |
CM |
HM1C |
HM2C |
120.0 |
120.0 |
| N |
CM |
HM1C |
HM3C |
240.0 |
240.1 |
| HM2C |
CM |
HM1C |
HM3C |
120.0 |
120.1 |
| HM2C |
CM |
N |
H |
256.0 |
176.1 |
| N |
CM |
HM2C |
HM1C |
240.0 |
240.0 |
| N |
CM |
HM2C |
HM3C |
120.0 |
119.9 |
| HM1C |
CM |
HM2C |
HM3C |
240.0 |
239.9 |
| HM3C |
CM |
N |
H |
16.0 |
296.1 |
| N |
CM |
HM3C |
HM1C |
120.0 |
119.9 |
| N |
CM |
HM3C |
HM2C |
240.0 |
240.0 |
| HM1C |
CM |
HM3C |
HM2C |
120.0 |
120.1 |
| HB1C |
CB |
CA |
C |
179.5 |
295.0 |
| CA |
CB |
HB1C |
CG |
235.2 |
240.0 |
| HB1C |
CB |
CA |
HA |
59.8 |
175.0 |
| CA |
CB |
HB1C |
HB2C |
117.6 |
120.0 |
| HB1C |
CB |
CG |
ND1 |
273.6 |
185.1 |
| HB1C |
CB |
CG |
CD2 |
93.9 |
4.7 |
| CG |
CB |
HB1C |
HB2C |
242.4 |
240.0 |
| HB2C |
CB |
CA |
C |
302.2 |
55.0 |
| CA |
CB |
HB2C |
CG |
123.3 |
120.0 |
| HB2C |
CB |
CA |
HA |
182.5 |
295.0 |
| CA |
CB |
HB2C |
HB1C |
241.6 |
240.0 |
| HB2C |
CB |
CG |
ND1 |
150.9 |
65.1 |
| HB2C |
CB |
CG |
CD2 |
331.3 |
244.7 |
| CG |
CB |
HB2C |
HB1C |
118.3 |
120.0 |
| C |
NXT |
HXT1 |
HXT2 |
180.0 |
180.0 |
| C |
NXT |
HXT2 |
HXT1 |
180.0 |
180.0 |
| CG |
CD2 |
HD2 |
NE2 |
180.0 |
179.9 |
| HD2 |
CD2 |
NE2 |
CE1 |
179.6 |
180.1 |
| HD2 |
CD2 |
NE2 |
HE2 |
359.5 |
359.9 |
| ND1 |
CE1 |
HE1 |
NE2 |
180.0 |
179.8 |
| HE1 |
CE1 |
NE2 |
HE2 |
0.5 |
0.1 |
| CD2 |
NE2 |
HE2 |
CE1 |
180.0 |
180.3 |
| HE2 |
NE2 |
CD2 |
HD2 |
359.5 |
359.9 |
| HE2 |
NE2 |
CE1 |
HE1 |
0.5 |
0.1 |