PDB Chemical Component HPV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HPV

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C3	1.507	1.507
C2	O3	1.215	1.209
C2	C1	1.453	1.491
O4P	P	1.544	1.610
P	O2P	1.541	1.610
P	O3P	1.535	1.480
P	O1P	1.617	1.610
O1P	C3	1.419	1.429
C1	O1	1.250	1.213
C1	O2	1.272	1.345
O4P	HO4P	0.950	0.966
O2P	HO2P	0.950	0.967
C3	H3	1.101	1.090
C3	H3A	1.100	1.090
O2	HO2	0.950	0.967

Bond Angles for HPV

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	O3	121.0	120.0
C3	C2	C1	118.5	120.0
C2	C3	O1P	112.6	109.4
C2	C3	H3	108.4	109.4
C2	C3	H3A	107.8	109.5
O3	C2	C1	120.5	120.0
C2	C1	O1	113.8	120.0
C2	C1	O2	121.7	120.0
O4P	P	O2P	113.8	109.4
O4P	P	O3P	114.3	109.5
O4P	P	O1P	105.8	109.5
P	O4P	HO4P	109.5	114.0
O2P	P	O3P	115.3	109.5
O2P	P	O1P	103.9	109.5
P	O2P	HO2P	109.5	114.1
O3P	P	O1P	101.8	109.5
P	O1P	C3	117.5	122.9
O1P	C3	H3	108.5	109.5
O1P	C3	H3A	107.7	109.5
O1	C1	O2	124.5	120.0
C1	O2	HO2	109.5	117.0
H3	C3	H3A	111.9	109.5

Torsion Angles for HPV

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3	C2	C3	C1	182.6	180.3
C3	C2	C1	O1	306.5	360.0
C3	C2	C1	O2	126.6	180.0
P	O1P	C3	C2	166.8	180.0
O1P	C3	C2	H3	240.0	240.0
O1P	C3	C2	H3A	118.7	120.0
H3	C3	C2	H3A	238.7	240.0
C3	C2	O3	C1	177.3	179.7
O3	C2	C3	O1P	90.8	0.0
O3	C2	C3	H3	210.8	120.0
O3	C2	C3	H3A	332.1	240.0
O3	C2	C1	O1	123.9	179.7
O3	C2	C1	O2	304.0	359.7
C3	C2	C1	O3	182.6	180.3
C1	C2	C3	O1P	268.1	179.7
C1	C2	C3	H3	28.1	299.7
C1	C2	C3	H3A	149.4	59.7
O1	C1	C2	O2	179.9	180.0
C2	C1	O2	HO2	179.9	180.0
O2P	P	O4P	O3P	224.6	240.0
O2P	P	O4P	O1P	113.4	120.0
O4P	P	O2P	HO2P	53.8	60.0
O3P	P	O4P	O1P	248.9	240.0
O4P	P	O1P	C3	225.6	295.0
O4P	P	O2P	O3P	135.0	120.0
O4P	P	O2P	O1P	245.5	240.0
O2P	P	O4P	HO4P	39.4	60.0
O3P	P	O2P	O1P	110.5	120.0
O2P	P	O1P	C3	105.5	175.0
O4P	P	O3P	O2P	225.2	240.0
O4P	P	O3P	O1P	113.5	120.0
O3P	P	O4P	HO4P	174.9	180.0
O2P	P	O3P	O1P	248.3	240.0
O3P	P	O2P	HO2P	278.9	300.0
O3P	P	O1P	C3	345.4	55.0
C2	C3	O1P	P	166.8	180.0
O4P	P	O1P	O2P	120.2	120.0
O4P	P	O1P	O3P	240.3	240.0
O1P	P	O4P	HO4P	286.0	300.1
O2P	P	O1P	O3P	120.1	120.0
O1P	P	O2P	HO2P	168.4	180.0
P	O1P	C3	H3	46.8	60.0
P	O1P	C3	H3A	285.5	300.0
O1P	C3	C2	O3	90.8	0.0
O1P	C3	C2	C1	268.1	179.7
C2	C3	O1P	H3	120.0	119.9
C2	C3	O1P	H3A	241.3	240.0
H3	C3	O1P	H3A	121.3	120.1
C2	C1	O1	O2	180.1	180.0
O1	C1	O2	HO2	0.0	0.1
C2	C1	O2	O1	179.9	180.0
HO4P	O4P	P	O2P	39.4	60.0
HO4P	O4P	P	O3P	174.9	180.0
HO4P	O4P	P	O1P	286.0	300.1
HO2P	O2P	P	O3P	278.9	300.0
HO2P	O2P	P	O1P	168.4	180.0
H3	C3	C2	O3	210.8	120.0
H3	C3	C2	C1	28.1	299.7
C2	C3	H3	O1P	237.5	240.1
C2	C3	H3	H3A	118.7	120.0
O1P	C3	H3	H3A	241.3	239.9
H3A	C3	C2	O3	332.1	240.0
H3A	C3	C2	C1	149.4	59.7
C2	C3	H3A	O1P	121.7	120.0
C2	C3	H3A	H3	240.9	240.0
O1P	C3	H3A	H3	119.1	120.1