PDB Chemical Component HPR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HPR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.332 |
1.318 |
| N1 |
C6 |
1.390 |
1.329 |
| C2 |
N3 |
1.322 |
1.317 |
| C2 |
H2 |
1.103 |
1.080 |
| N3 |
C4 |
1.360 |
1.331 |
| C4 |
C5 |
1.342 |
1.395 |
| C4 |
N9 |
1.356 |
1.392 |
| C5 |
C6 |
1.434 |
1.392 |
| C5 |
N7 |
1.360 |
1.407 |
| C6 |
O6 |
1.466 |
1.357 |
| O6 |
HO6 |
0.951 |
0.967 |
| N7 |
C8 |
1.344 |
1.481 |
| N7 |
HN7 |
1.020 |
1.009 |
| C8 |
N9 |
1.345 |
1.481 |
| C8 |
H81 |
1.115 |
1.089 |
| C8 |
H82 |
1.115 |
1.090 |
| N9 |
C1' |
1.447 |
1.467 |
| C1' |
C2' |
1.580 |
1.540 |
| C1' |
O4' |
1.416 |
1.437 |
| C1' |
H1' |
1.115 |
1.089 |
| C2' |
O2' |
1.436 |
1.428 |
| C2' |
C3' |
1.534 |
1.550 |
| C2' |
H2' |
1.116 |
1.091 |
| O2' |
HO2' |
0.951 |
0.966 |
| C3' |
O3' |
1.434 |
1.430 |
| C3' |
C4' |
1.637 |
1.549 |
| C3' |
H3' |
1.115 |
1.089 |
| O3' |
HO3' |
0.950 |
0.968 |
| C4' |
O4' |
1.372 |
1.444 |
| C4' |
C5' |
1.530 |
1.530 |
| C4' |
H4' |
1.115 |
1.090 |
| C5' |
O5' |
1.448 |
1.429 |
| C5' |
H5'1 |
1.115 |
1.089 |
| C5' |
H5'2 |
1.114 |
1.090 |
| O5' |
HO5' |
0.950 |
0.967 |
Bond Angles for HPR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.3 |
120.9 |
| N1 |
C2 |
N3 |
121.6 |
122.1 |
| N1 |
C2 |
H2 |
119.5 |
118.9 |
| N1 |
C6 |
C5 |
116.3 |
118.9 |
| N1 |
C6 |
O6 |
105.9 |
120.6 |
| N3 |
C2 |
H2 |
118.8 |
119.0 |
| C2 |
N3 |
C4 |
120.4 |
120.8 |
| N3 |
C4 |
C5 |
121.0 |
118.8 |
| N3 |
C4 |
N9 |
130.8 |
131.8 |
| C5 |
C4 |
N9 |
108.2 |
109.4 |
| C4 |
C5 |
C6 |
119.4 |
118.5 |
| C4 |
C5 |
N7 |
107.9 |
109.2 |
| C4 |
N9 |
C8 |
107.7 |
105.6 |
| C4 |
N9 |
C1' |
125.7 |
106.7 |
| C6 |
C5 |
N7 |
132.8 |
132.3 |
| C5 |
C6 |
O6 |
109.8 |
120.5 |
| C5 |
N7 |
C8 |
107.7 |
105.0 |
| C5 |
N7 |
HN7 |
112.9 |
106.7 |
| C6 |
O6 |
HO6 |
105.9 |
106.8 |
| C8 |
N7 |
HN7 |
112.9 |
106.7 |
| N7 |
C8 |
N9 |
108.5 |
103.1 |
| N7 |
C8 |
H81 |
112.6 |
110.7 |
| N7 |
C8 |
H82 |
112.6 |
110.7 |
| N9 |
C8 |
H81 |
112.6 |
110.7 |
| N9 |
C8 |
H82 |
112.6 |
110.7 |
| C8 |
N9 |
C1' |
126.2 |
106.7 |
| H81 |
C8 |
H82 |
97.8 |
110.7 |
| N9 |
C1' |
C2' |
109.3 |
110.0 |
| N9 |
C1' |
O4' |
111.3 |
109.9 |
| N9 |
C1' |
H1' |
107.1 |
109.9 |
| C2' |
C1' |
O4' |
105.2 |
107.2 |
| C2' |
C1' |
H1' |
112.9 |
109.8 |
| C1' |
C2' |
O2' |
111.1 |
110.5 |
| C1' |
C2' |
C3' |
108.7 |
104.3 |
| C1' |
C2' |
H2' |
109.2 |
110.5 |
| O4' |
C1' |
H1' |
111.1 |
109.9 |
| C1' |
O4' |
C4' |
107.2 |
107.0 |
| O2' |
C2' |
C3' |
110.4 |
110.5 |
| O2' |
C2' |
H2' |
107.5 |
110.4 |
| C2' |
O2' |
HO2' |
111.1 |
106.8 |
| C3' |
C2' |
H2' |
109.9 |
110.5 |
| C2' |
C3' |
O3' |
111.1 |
110.9 |
| C2' |
C3' |
C4' |
91.0 |
102.0 |
| C2' |
C3' |
H3' |
120.9 |
110.9 |
| O3' |
C3' |
C4' |
112.9 |
111.1 |
| O3' |
C3' |
H3' |
102.0 |
110.8 |
| C3' |
O3' |
HO3' |
111.1 |
106.8 |
| C4' |
C3' |
H3' |
119.4 |
110.8 |
| C3' |
C4' |
O4' |
110.9 |
103.6 |
| C3' |
C4' |
C5' |
112.7 |
110.7 |
| C3' |
C4' |
H4' |
106.0 |
110.7 |
| O4' |
C4' |
C5' |
108.9 |
110.6 |
| O4' |
C4' |
H4' |
110.1 |
110.5 |
| C5' |
C4' |
H4' |
108.2 |
110.5 |
| C4' |
C5' |
O5' |
110.1 |
109.5 |
| C4' |
C5' |
H5'1 |
112.0 |
109.4 |
| C4' |
C5' |
H5'2 |
112.0 |
109.5 |
| O5' |
C5' |
H5'1 |
112.0 |
109.5 |
| O5' |
C5' |
H5'2 |
111.9 |
109.5 |
| C5' |
O5' |
HO5' |
110.2 |
106.8 |
| H5'1 |
C5' |
H5'2 |
98.5 |
109.5 |
Torsion Angles for HPR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
1.1 |
0.0 |
| C2 |
N1 |
C6 |
O6 |
238.8 |
180.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
179.9 |
| N1 |
C2 |
N3 |
C4 |
359.7 |
0.1 |
| C6 |
N1 |
C2 |
N3 |
359.5 |
359.9 |
| C6 |
N1 |
C2 |
H2 |
179.5 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.0 |
0.1 |
| N1 |
C6 |
C5 |
N7 |
178.8 |
180.0 |
| C5 |
C6 |
N1 |
O6 |
122.3 |
180.0 |
| N1 |
C6 |
O6 |
HO6 |
180.0 |
270.1 |
| N3 |
C2 |
N1 |
C6 |
359.5 |
359.9 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.1 |
| C2 |
N3 |
C4 |
C5 |
0.5 |
360.0 |
| C2 |
N3 |
C4 |
N9 |
181.7 |
180.0 |
| H2 |
C2 |
N1 |
C6 |
179.5 |
180.0 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
179.9 |
| H2 |
C2 |
N3 |
C4 |
179.6 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
179.6 |
180.0 |
| C5 |
C4 |
N3 |
N9 |
178.7 |
179.9 |
| N3 |
C4 |
C5 |
C6 |
0.2 |
359.9 |
| N3 |
C4 |
C5 |
N7 |
180.4 |
180.0 |
| N3 |
C4 |
N9 |
C8 |
180.4 |
197.0 |
| N3 |
C4 |
N9 |
C1' |
7.2 |
310.3 |
| N1 |
C6 |
C5 |
C4 |
359.0 |
0.1 |
| N3 |
C4 |
C5 |
N9 |
181.0 |
180.0 |
| C5 |
C4 |
N9 |
C8 |
1.6 |
17.1 |
| C5 |
C4 |
N9 |
C1' |
188.4 |
130.4 |
| C6 |
C5 |
C4 |
N7 |
179.8 |
179.9 |
| C4 |
C5 |
C6 |
O6 |
119.2 |
180.1 |
| C4 |
C5 |
N7 |
C8 |
359.4 |
343.0 |
| C4 |
C5 |
N7 |
HN7 |
234.1 |
230.0 |
| N3 |
C4 |
N9 |
C5 |
178.9 |
179.9 |
| N9 |
C4 |
C5 |
C6 |
179.2 |
179.9 |
| N9 |
C4 |
C5 |
N7 |
359.4 |
360.0 |
| N7 |
C8 |
N9 |
C4 |
358.0 |
333.5 |
| C4 |
N9 |
C8 |
H81 |
232.8 |
92.0 |
| C4 |
N9 |
C8 |
H82 |
123.3 |
215.1 |
| C8 |
N9 |
C4 |
C1' |
173.2 |
246.7 |
| C4 |
N9 |
C1' |
C2' |
135.0 |
68.2 |
| C4 |
N9 |
C1' |
O4' |
250.8 |
186.0 |
| C4 |
N9 |
C1' |
H1' |
12.4 |
307.1 |
| N1 |
C6 |
C5 |
O6 |
239.8 |
180.0 |
| C6 |
C5 |
C4 |
N9 |
179.2 |
179.9 |
| C4 |
C5 |
C6 |
N7 |
180.2 |
180.1 |
| C6 |
C5 |
N7 |
C8 |
179.6 |
163.1 |
| C6 |
C5 |
N7 |
HN7 |
54.3 |
50.1 |
| C5 |
C6 |
O6 |
HO6 |
53.7 |
90.1 |
| N7 |
C5 |
C4 |
N9 |
359.4 |
360.0 |
| C4 |
C5 |
N7 |
C6 |
179.8 |
179.9 |
| N7 |
C5 |
C6 |
O6 |
299.0 |
360.0 |
| C8 |
N7 |
C5 |
HN7 |
125.3 |
113.1 |
| C5 |
N7 |
C8 |
N9 |
1.6 |
26.3 |
| C5 |
N7 |
C8 |
H81 |
126.9 |
267.9 |
| C5 |
N7 |
C8 |
H82 |
236.3 |
144.7 |
| N1 |
C6 |
O6 |
C5 |
126.3 |
180.0 |
| O6 |
C6 |
C5 |
N7 |
299.0 |
360.0 |
| C4 |
N9 |
C8 |
N7 |
358.0 |
333.5 |
| C5 |
N7 |
C8 |
HN7 |
234.7 |
247.0 |
| N9 |
C8 |
N7 |
H81 |
234.7 |
118.4 |
| N9 |
C8 |
N7 |
H82 |
125.3 |
241.6 |
| N7 |
C8 |
N9 |
C1' |
171.2 |
220.2 |
| H81 |
C8 |
N7 |
H82 |
250.6 |
123.1 |
| C5 |
N7 |
HN7 |
C8 |
122.4 |
111.8 |
| HN7 |
N7 |
C8 |
N9 |
126.9 |
139.3 |
| HN7 |
N7 |
C8 |
H81 |
252.1 |
20.8 |
| HN7 |
N7 |
C8 |
H82 |
1.6 |
257.7 |
| C4 |
N9 |
C8 |
C1' |
186.8 |
113.3 |
| N9 |
C8 |
N7 |
HN7 |
126.9 |
139.3 |
| N7 |
C8 |
N9 |
H81 |
125.3 |
241.5 |
| N7 |
C8 |
N9 |
H82 |
234.7 |
118.4 |
| H81 |
C8 |
N9 |
H82 |
109.5 |
236.9 |
| C8 |
N9 |
C1' |
C2' |
323.0 |
180.7 |
| C8 |
N9 |
C1' |
O4' |
78.8 |
298.5 |
| C8 |
N9 |
C1' |
H1' |
200.4 |
59.6 |
| H81 |
C8 |
N7 |
HN7 |
252.1 |
20.8 |
| N7 |
C8 |
H81 |
N9 |
237.0 |
113.8 |
| N7 |
C8 |
H81 |
H82 |
118.5 |
236.9 |
| N9 |
C8 |
H81 |
H82 |
241.5 |
123.1 |
| H81 |
C8 |
N9 |
C1' |
46.0 |
338.7 |
| H82 |
C8 |
N7 |
HN7 |
1.6 |
257.7 |
| N7 |
C8 |
H82 |
N9 |
123.0 |
246.3 |
| N7 |
C8 |
H82 |
H81 |
241.5 |
123.1 |
| N9 |
C8 |
H82 |
H81 |
118.5 |
236.9 |
| H82 |
C8 |
N9 |
C1' |
296.5 |
101.8 |
| C4 |
N9 |
C1' |
C8 |
172.0 |
247.5 |
| C1' |
N9 |
C8 |
H81 |
46.0 |
338.7 |
| C1' |
N9 |
C8 |
H82 |
296.5 |
101.8 |
| C2' |
C1' |
N9 |
O4' |
244.2 |
242.1 |
| C2' |
C1' |
N9 |
H1' |
122.6 |
121.1 |
| N9 |
C1' |
C2' |
O2' |
224.1 |
240.4 |
| N9 |
C1' |
C2' |
C3' |
102.4 |
121.6 |
| N9 |
C1' |
C2' |
H2' |
342.5 |
2.9 |
| O4' |
C1' |
N9 |
H1' |
238.4 |
239.0 |
| N9 |
C1' |
O4' |
C4' |
230.7 |
213.9 |
| N9 |
C1' |
C2' |
O4' |
119.6 |
119.5 |
| N9 |
C1' |
C2' |
H1' |
240.9 |
238.9 |
| O4' |
C1' |
C2' |
H1' |
121.3 |
119.4 |
| C2' |
C1' |
O4' |
C4' |
349.0 |
333.5 |
| O2' |
C2' |
C1' |
C3' |
121.7 |
118.8 |
| O2' |
C2' |
C1' |
H2' |
241.6 |
237.5 |
| C1' |
C2' |
O2' |
HO2' |
180.0 |
180.0 |
| C3' |
C2' |
C1' |
H2' |
119.9 |
118.8 |
| C1' |
C2' |
C3' |
O3' |
146.8 |
139.1 |
| C1' |
C2' |
C3' |
C4' |
31.7 |
20.7 |
| C1' |
C2' |
C3' |
H3' |
266.2 |
262.7 |
| N9 |
C1' |
O4' |
C2' |
241.7 |
240.4 |
| N9 |
C1' |
O4' |
H1' |
119.2 |
121.1 |
| C2' |
C1' |
O4' |
H1' |
237.5 |
240.6 |
| O4' |
C1' |
C2' |
O2' |
104.5 |
120.9 |
| O4' |
C1' |
C2' |
C3' |
342.7 |
2.1 |
| O4' |
C1' |
C2' |
H2' |
222.8 |
243.4 |
| C3' |
C4' |
O4' |
C1' |
34.9 |
40.0 |
| C1' |
O4' |
C4' |
C5' |
159.4 |
158.6 |
| C1' |
O4' |
C4' |
H4' |
277.9 |
281.4 |
| N9 |
C1' |
H1' |
C2' |
120.4 |
121.2 |
| N9 |
C1' |
H1' |
O4' |
238.3 |
239.0 |
| C2' |
C1' |
H1' |
O4' |
117.9 |
117.7 |
| H1' |
C1' |
C2' |
O2' |
343.2 |
1.5 |
| H1' |
C1' |
C2' |
C3' |
221.4 |
242.7 |
| H1' |
C1' |
C2' |
H2' |
101.5 |
124.0 |
| H1' |
C1' |
O4' |
C4' |
111.5 |
92.9 |
| O2' |
C2' |
C1' |
O4' |
104.5 |
120.9 |
| O2' |
C2' |
C1' |
H1' |
343.2 |
1.5 |
| C1' |
C2' |
O2' |
C3' |
239.3 |
245.1 |
| C1' |
C2' |
O2' |
H2' |
119.4 |
122.5 |
| C3' |
C2' |
O2' |
H2' |
240.1 |
237.4 |
| O2' |
C2' |
C3' |
O3' |
24.7 |
20.3 |
| O2' |
C2' |
C3' |
C4' |
269.6 |
261.9 |
| O2' |
C2' |
C3' |
H3' |
144.0 |
143.9 |
| C3' |
C2' |
C1' |
O4' |
342.7 |
2.1 |
| C3' |
C2' |
C1' |
H1' |
221.4 |
242.7 |
| C1' |
C2' |
C3' |
O2' |
122.1 |
118.8 |
| C1' |
C2' |
C3' |
H2' |
240.5 |
241.3 |
| O2' |
C2' |
C3' |
H2' |
118.4 |
122.5 |
| C3' |
C2' |
O2' |
HO2' |
300.7 |
294.9 |
| O3' |
C3' |
C2' |
C4' |
115.1 |
118.4 |
| O3' |
C3' |
C2' |
H3' |
240.7 |
236.4 |
| C2' |
C3' |
O3' |
HO3' |
179.9 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
125.6 |
118.0 |
| C2' |
C3' |
C4' |
O4' |
318.6 |
323.2 |
| C2' |
C3' |
C4' |
C5' |
196.2 |
204.5 |
| C2' |
C3' |
C4' |
H4' |
78.1 |
81.7 |
| H2' |
C2' |
C1' |
O4' |
222.8 |
243.4 |
| H2' |
C2' |
C1' |
H1' |
101.5 |
124.0 |
| C1' |
C2' |
H2' |
O2' |
239.4 |
237.4 |
| C1' |
C2' |
H2' |
C3' |
119.2 |
114.9 |
| O2' |
C2' |
H2' |
C3' |
239.8 |
237.4 |
| H2' |
C2' |
O2' |
HO2' |
60.6 |
57.5 |
| H2' |
C2' |
C3' |
O3' |
266.3 |
257.8 |
| H2' |
C2' |
C3' |
C4' |
151.2 |
139.4 |
| H2' |
C2' |
C3' |
H3' |
25.6 |
21.4 |
| HO2' |
O2' |
C2' |
C3' |
300.7 |
294.9 |
| HO2' |
O2' |
C2' |
H2' |
60.6 |
57.5 |
| O3' |
C3' |
C2' |
H2' |
266.3 |
257.8 |
| C2' |
C3' |
O3' |
C4' |
259.5 |
247.3 |
| C2' |
C3' |
O3' |
H3' |
130.2 |
123.7 |
| C4' |
C3' |
O3' |
H3' |
230.7 |
236.4 |
| O3' |
C3' |
C4' |
O4' |
205.1 |
204.9 |
| O3' |
C3' |
C4' |
C5' |
82.8 |
86.3 |
| O3' |
C3' |
C4' |
H4' |
324.6 |
323.5 |
| C1' |
O4' |
C4' |
C3' |
34.9 |
40.0 |
| C4' |
C3' |
C2' |
H2' |
151.2 |
139.4 |
| C2' |
C3' |
C4' |
O3' |
113.4 |
118.2 |
| C2' |
C3' |
C4' |
H3' |
233.2 |
241.9 |
| O3' |
C3' |
C4' |
H3' |
119.7 |
123.6 |
| C4' |
C3' |
O3' |
HO3' |
280.4 |
292.7 |
| O4' |
C4' |
C3' |
C5' |
122.3 |
118.6 |
| O4' |
C4' |
C3' |
H4' |
240.5 |
241.5 |
| C5' |
C4' |
C3' |
H4' |
118.2 |
122.9 |
| C3' |
C4' |
C5' |
O5' |
39.3 |
177.8 |
| C3' |
C4' |
C5' |
H5'1 |
164.6 |
57.8 |
| C3' |
C4' |
C5' |
H5'2 |
274.1 |
297.8 |
| H3' |
C3' |
C2' |
H2' |
25.6 |
21.4 |
| C2' |
C3' |
H3' |
O3' |
236.2 |
236.4 |
| C2' |
C3' |
H3' |
C4' |
111.1 |
112.6 |
| O3' |
C3' |
H3' |
C4' |
234.9 |
236.2 |
| H3' |
C3' |
O3' |
HO3' |
49.8 |
56.4 |
| H3' |
C3' |
C4' |
O4' |
85.4 |
81.3 |
| H3' |
C3' |
C4' |
C5' |
323.1 |
322.7 |
| H3' |
C3' |
C4' |
H4' |
204.9 |
199.8 |
| HO3' |
O3' |
C3' |
C4' |
280.4 |
292.7 |
| HO3' |
O3' |
C3' |
H3' |
49.8 |
56.4 |
| C4' |
O4' |
C1' |
H1' |
111.5 |
92.9 |
| O4' |
C4' |
C3' |
H3' |
85.4 |
81.3 |
| C3' |
C4' |
O4' |
C5' |
235.5 |
241.4 |
| C3' |
C4' |
O4' |
H4' |
117.0 |
118.6 |
| C5' |
C4' |
O4' |
H4' |
241.5 |
237.2 |
| O4' |
C4' |
C5' |
O5' |
275.9 |
63.5 |
| O4' |
C4' |
C5' |
H5'1 |
41.1 |
303.5 |
| O4' |
C4' |
C5' |
H5'2 |
150.7 |
183.6 |
| C5' |
C4' |
C3' |
H3' |
323.1 |
322.7 |
| C3' |
C4' |
C5' |
O4' |
123.5 |
114.3 |
| C3' |
C4' |
C5' |
H4' |
243.1 |
237.0 |
| O4' |
C4' |
C5' |
H4' |
119.6 |
122.8 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
120.0 |
| O5' |
C5' |
C4' |
H5'2 |
125.2 |
239.9 |
| C4' |
C5' |
O5' |
HO5' |
180.0 |
180.0 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.5 |
120.0 |
| H4' |
C4' |
C3' |
H3' |
204.9 |
199.8 |
| C3' |
C4' |
H4' |
O4' |
240.0 |
245.8 |
| C3' |
C4' |
H4' |
C5' |
121.1 |
123.0 |
| O4' |
C4' |
H4' |
C5' |
241.1 |
237.2 |
| H4' |
C4' |
C5' |
O5' |
156.2 |
300.7 |
| H4' |
C4' |
C5' |
H5'1 |
281.5 |
180.8 |
| H4' |
C4' |
C5' |
H5'2 |
31.0 |
60.8 |
| O5' |
C5' |
C4' |
H4' |
156.2 |
300.7 |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
240.1 |
| C4' |
C5' |
O5' |
H5'2 |
234.8 |
120.0 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.5 |
240.0 |
| H5'1 |
C5' |
C4' |
H4' |
281.5 |
180.8 |
| C4' |
C5' |
H5'1 |
O5' |
235.8 |
120.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
117.9 |
240.1 |
| O5' |
C5' |
H5'1 |
H5'2 |
242.1 |
120.1 |
| H5'1 |
C5' |
O5' |
HO5' |
54.8 |
300.0 |
| H5'2 |
C5' |
C4' |
H4' |
31.0 |
60.8 |
| C4' |
C5' |
H5'2 |
O5' |
124.2 |
240.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
242.1 |
119.9 |
| O5' |
C5' |
H5'2 |
H5'1 |
117.9 |
240.0 |
| H5'2 |
C5' |
O5' |
HO5' |
305.3 |
60.0 |
| HO5' |
O5' |
C5' |
H5'1 |
54.8 |
300.0 |
| HO5' |
O5' |
C5' |
H5'2 |
305.3 |
60.0 |