PDB Chemical Component HPL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HPL
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.517 |
1.530 |
C1 |
C6 |
1.532 |
1.530 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.115 |
1.090 |
C2 |
C3 |
1.515 |
1.528 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.115 |
1.090 |
C3 |
C4 |
1.510 |
1.530 |
C3 |
H31 |
1.115 |
1.090 |
C3 |
H32 |
1.115 |
1.090 |
C4 |
C5 |
1.526 |
1.528 |
C4 |
H41 |
1.115 |
1.090 |
C4 |
H42 |
1.115 |
1.090 |
C5 |
C12 |
1.498 |
1.529 |
C5 |
H51 |
1.115 |
1.090 |
C5 |
H52 |
1.116 |
1.090 |
C6 |
H61 |
1.115 |
1.089 |
C6 |
H62 |
1.115 |
1.090 |
C6 |
H63 |
1.115 |
1.090 |
C12 |
N13 |
1.453 |
1.464 |
C12 |
H121 |
1.115 |
1.090 |
C12 |
H122 |
1.115 |
1.090 |
N13 |
C14 |
1.325 |
1.348 |
N13 |
H13 |
1.020 |
0.971 |
C14 |
O16 |
1.228 |
1.212 |
C14 |
H14 |
1.103 |
1.080 |
Bond Angles for HPL
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
111.3 |
109.5 |
C2 |
C1 |
H11 |
111.6 |
109.4 |
C2 |
C1 |
H12 |
111.5 |
109.4 |
C1 |
C2 |
C3 |
110.6 |
109.5 |
C1 |
C2 |
H21 |
111.8 |
109.5 |
C1 |
C2 |
H22 |
111.8 |
109.5 |
C6 |
C1 |
H11 |
111.5 |
109.5 |
C6 |
C1 |
H12 |
111.5 |
109.5 |
C1 |
C6 |
H61 |
111.5 |
109.5 |
C1 |
C6 |
H62 |
111.3 |
109.4 |
C1 |
C6 |
H63 |
111.5 |
109.4 |
H11 |
C1 |
H12 |
98.9 |
109.5 |
C3 |
C2 |
H21 |
111.8 |
109.5 |
C3 |
C2 |
H22 |
111.8 |
109.5 |
C2 |
C3 |
C4 |
110.7 |
109.6 |
C2 |
C3 |
H31 |
111.8 |
109.5 |
C2 |
C3 |
H32 |
111.7 |
109.5 |
H21 |
C2 |
H22 |
98.6 |
109.4 |
C4 |
C3 |
H31 |
111.7 |
109.4 |
C4 |
C3 |
H32 |
111.7 |
109.4 |
C3 |
C4 |
C5 |
112.3 |
109.6 |
C3 |
C4 |
H41 |
111.2 |
109.4 |
C3 |
C4 |
H42 |
111.2 |
109.4 |
H31 |
C3 |
H32 |
98.7 |
109.4 |
C5 |
C4 |
H41 |
111.2 |
109.5 |
C5 |
C4 |
H42 |
111.2 |
109.5 |
C4 |
C5 |
C12 |
113.6 |
109.5 |
C4 |
C5 |
H51 |
110.7 |
109.5 |
C4 |
C5 |
H52 |
110.7 |
109.5 |
H41 |
C4 |
H42 |
99.2 |
109.4 |
C12 |
C5 |
H51 |
110.7 |
109.4 |
C12 |
C5 |
H52 |
110.7 |
109.4 |
C5 |
C12 |
N13 |
111.1 |
109.6 |
C5 |
C12 |
H121 |
111.6 |
109.4 |
C5 |
C12 |
H122 |
111.6 |
109.4 |
H51 |
C5 |
H52 |
99.6 |
109.4 |
H61 |
C6 |
H62 |
111.5 |
109.5 |
H61 |
C6 |
H63 |
98.9 |
109.5 |
H62 |
C6 |
H63 |
111.5 |
109.4 |
N13 |
C12 |
H121 |
111.6 |
109.5 |
N13 |
C12 |
H122 |
111.6 |
109.5 |
C12 |
N13 |
C14 |
126.2 |
120.1 |
C12 |
N13 |
H13 |
122.1 |
120.0 |
H121 |
C12 |
H122 |
98.8 |
109.4 |
C14 |
N13 |
H13 |
111.7 |
119.9 |
N13 |
C14 |
O16 |
123.8 |
120.0 |
N13 |
C14 |
H14 |
122.2 |
120.0 |
O16 |
C14 |
H14 |
114.0 |
120.0 |
Torsion Angles for HPL
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
H11 |
125.2 |
120.0 |
C6 |
C1 |
C2 |
H12 |
234.7 |
240.0 |
C2 |
C1 |
C6 |
H61 |
54.7 |
180.0 |
C2 |
C1 |
C6 |
H62 |
180.0 |
300.0 |
C2 |
C1 |
C6 |
H63 |
305.2 |
60.0 |
H11 |
C1 |
C2 |
H12 |
109.5 |
120.0 |
C3 |
C2 |
C1 |
H21 |
125.2 |
240.0 |
C3 |
C2 |
C1 |
H22 |
234.7 |
120.0 |
C1 |
C2 |
C3 |
C4 |
138.2 |
180.0 |
C1 |
C2 |
C3 |
H31 |
12.9 |
300.0 |
C1 |
C2 |
C3 |
H32 |
263.4 |
60.0 |
H21 |
C2 |
C1 |
H22 |
109.5 |
240.1 |
C2 |
C1 |
C6 |
H11 |
234.7 |
240.0 |
C2 |
C1 |
C6 |
H12 |
125.2 |
120.0 |
C6 |
C1 |
C2 |
C3 |
316.9 |
180.0 |
C6 |
C1 |
C2 |
H21 |
191.6 |
300.0 |
C6 |
C1 |
C2 |
H22 |
82.1 |
60.0 |
H11 |
C1 |
C6 |
H12 |
250.5 |
239.9 |
H61 |
C6 |
C1 |
H62 |
234.8 |
240.0 |
H61 |
C6 |
C1 |
H63 |
109.5 |
120.0 |
H62 |
C6 |
C1 |
H63 |
234.7 |
240.1 |
C2 |
C1 |
H11 |
C6 |
125.1 |
120.0 |
C2 |
C1 |
H11 |
H12 |
242.6 |
240.0 |
H11 |
C1 |
C2 |
C3 |
191.6 |
60.0 |
H11 |
C1 |
C2 |
H21 |
66.4 |
180.0 |
H11 |
C1 |
C2 |
H22 |
316.9 |
300.0 |
C6 |
C1 |
H11 |
H12 |
117.5 |
120.0 |
H11 |
C1 |
C6 |
H61 |
180.0 |
300.0 |
H11 |
C1 |
C6 |
H62 |
305.2 |
60.0 |
H11 |
C1 |
C6 |
H63 |
70.5 |
179.9 |
C2 |
C1 |
H12 |
C6 |
234.9 |
240.0 |
C2 |
C1 |
H12 |
H11 |
117.5 |
120.0 |
H12 |
C1 |
C2 |
C3 |
82.1 |
300.0 |
H12 |
C1 |
C2 |
H21 |
316.9 |
60.0 |
H12 |
C1 |
C2 |
H22 |
207.4 |
180.0 |
C6 |
C1 |
H12 |
H11 |
242.6 |
240.0 |
H12 |
C1 |
C6 |
H61 |
289.5 |
60.0 |
H12 |
C1 |
C6 |
H62 |
54.7 |
180.1 |
H12 |
C1 |
C6 |
H63 |
180.0 |
300.0 |
C3 |
C2 |
C1 |
C6 |
316.9 |
180.0 |
C3 |
C2 |
C1 |
H11 |
191.6 |
60.0 |
C3 |
C2 |
C1 |
H12 |
82.1 |
300.0 |
C1 |
C2 |
C3 |
H21 |
234.7 |
120.0 |
C1 |
C2 |
C3 |
H22 |
125.2 |
240.0 |
H21 |
C2 |
C3 |
H22 |
250.5 |
120.0 |
C4 |
C3 |
C2 |
H31 |
125.3 |
240.0 |
C4 |
C3 |
C2 |
H32 |
234.8 |
120.0 |
C2 |
C3 |
C4 |
C5 |
180.5 |
180.0 |
C2 |
C3 |
C4 |
H41 |
55.3 |
300.0 |
C2 |
C3 |
C4 |
H42 |
305.8 |
60.0 |
H31 |
C3 |
C2 |
H32 |
109.5 |
240.0 |
H21 |
C2 |
C1 |
C6 |
191.6 |
300.0 |
H21 |
C2 |
C1 |
H11 |
66.4 |
180.0 |
H21 |
C2 |
C1 |
H12 |
316.9 |
60.0 |
C1 |
C2 |
H21 |
C3 |
124.6 |
239.9 |
C1 |
C2 |
H21 |
H22 |
242.3 |
119.9 |
C3 |
C2 |
H21 |
H22 |
117.7 |
240.0 |
H21 |
C2 |
C3 |
C4 |
263.4 |
60.0 |
H21 |
C2 |
C3 |
H31 |
138.2 |
180.0 |
H21 |
C2 |
C3 |
H32 |
28.7 |
300.0 |
H22 |
C2 |
C1 |
C6 |
82.1 |
60.0 |
H22 |
C2 |
C1 |
H11 |
316.9 |
300.0 |
H22 |
C2 |
C1 |
H12 |
207.4 |
180.0 |
C1 |
C2 |
H22 |
C3 |
235.4 |
120.1 |
C1 |
C2 |
H22 |
H21 |
117.7 |
240.1 |
C3 |
C2 |
H22 |
H21 |
242.3 |
120.0 |
H22 |
C2 |
C3 |
C4 |
12.9 |
300.0 |
H22 |
C2 |
C3 |
H31 |
247.7 |
60.0 |
H22 |
C2 |
C3 |
H32 |
138.2 |
180.0 |
C4 |
C3 |
C2 |
H21 |
263.4 |
60.0 |
C4 |
C3 |
C2 |
H22 |
12.9 |
300.0 |
C2 |
C3 |
C4 |
H31 |
234.7 |
120.0 |
C2 |
C3 |
C4 |
H32 |
125.2 |
240.0 |
H31 |
C3 |
C4 |
H32 |
250.5 |
119.9 |
C5 |
C4 |
C3 |
H41 |
125.3 |
240.0 |
C5 |
C4 |
C3 |
H42 |
234.7 |
120.0 |
C3 |
C4 |
C5 |
C12 |
29.6 |
180.0 |
C3 |
C4 |
C5 |
H51 |
264.3 |
300.0 |
C3 |
C4 |
C5 |
H52 |
154.9 |
60.0 |
H41 |
C4 |
C3 |
H42 |
109.5 |
240.1 |
H31 |
C3 |
C2 |
H21 |
138.2 |
180.0 |
H31 |
C3 |
C2 |
H22 |
247.7 |
60.0 |
C2 |
C3 |
H31 |
C4 |
124.7 |
239.9 |
C2 |
C3 |
H31 |
H32 |
242.4 |
120.0 |
C4 |
C3 |
H31 |
H32 |
117.7 |
240.1 |
H31 |
C3 |
C4 |
C5 |
305.8 |
60.0 |
H31 |
C3 |
C4 |
H41 |
180.5 |
180.0 |
H31 |
C3 |
C4 |
H42 |
71.1 |
299.9 |
H32 |
C3 |
C2 |
H21 |
28.7 |
300.0 |
H32 |
C3 |
C2 |
H22 |
138.2 |
180.0 |
C2 |
C3 |
H32 |
C4 |
235.3 |
120.1 |
C2 |
C3 |
H32 |
H31 |
117.7 |
240.0 |
C4 |
C3 |
H32 |
H31 |
242.3 |
119.9 |
H32 |
C3 |
C4 |
C5 |
55.3 |
300.0 |
H32 |
C3 |
C4 |
H41 |
290.0 |
60.1 |
H32 |
C3 |
C4 |
H42 |
180.6 |
180.0 |
C5 |
C4 |
C3 |
H31 |
305.8 |
60.0 |
C5 |
C4 |
C3 |
H32 |
55.3 |
300.0 |
C3 |
C4 |
C5 |
H41 |
234.7 |
120.0 |
C3 |
C4 |
C5 |
H42 |
125.3 |
240.0 |
H41 |
C4 |
C5 |
H42 |
250.5 |
120.0 |
C12 |
C5 |
C4 |
H51 |
125.3 |
240.0 |
C12 |
C5 |
C4 |
H52 |
234.7 |
120.0 |
C4 |
C5 |
C12 |
N13 |
127.5 |
180.0 |
C4 |
C5 |
C12 |
H121 |
2.2 |
300.0 |
C4 |
C5 |
C12 |
H122 |
252.7 |
60.0 |
H51 |
C5 |
C4 |
H52 |
109.4 |
240.0 |
H41 |
C4 |
C3 |
H31 |
180.5 |
180.0 |
H41 |
C4 |
C3 |
H32 |
290.0 |
60.1 |
C3 |
C4 |
H41 |
C5 |
125.9 |
239.9 |
C3 |
C4 |
H41 |
H42 |
242.9 |
119.9 |
C5 |
C4 |
H41 |
H42 |
117.1 |
240.0 |
H41 |
C4 |
C5 |
C12 |
154.9 |
60.0 |
H41 |
C4 |
C5 |
H51 |
29.6 |
180.0 |
H41 |
C4 |
C5 |
H52 |
280.2 |
300.0 |
H42 |
C4 |
C3 |
H31 |
71.1 |
299.9 |
H42 |
C4 |
C3 |
H32 |
180.6 |
180.0 |
C3 |
C4 |
H42 |
C5 |
234.1 |
120.1 |
C3 |
C4 |
H42 |
H41 |
117.1 |
240.1 |
C5 |
C4 |
H42 |
H41 |
242.9 |
120.0 |
H42 |
C4 |
C5 |
C12 |
264.4 |
300.0 |
H42 |
C4 |
C5 |
H51 |
139.1 |
60.0 |
H42 |
C4 |
C5 |
H52 |
29.6 |
180.0 |
C12 |
C5 |
C4 |
H41 |
154.9 |
60.0 |
C12 |
C5 |
C4 |
H42 |
264.4 |
300.0 |
C4 |
C5 |
C12 |
H51 |
234.7 |
120.0 |
C4 |
C5 |
C12 |
H52 |
125.3 |
240.0 |
H51 |
C5 |
C12 |
H52 |
250.5 |
119.9 |
N13 |
C12 |
C5 |
H121 |
125.3 |
240.0 |
N13 |
C12 |
C5 |
H122 |
234.7 |
120.0 |
C5 |
C12 |
N13 |
C14 |
121.0 |
180.0 |
C5 |
C12 |
N13 |
H13 |
301.0 |
-0.0 |
H121 |
C12 |
C5 |
H122 |
109.5 |
240.1 |
H51 |
C5 |
C4 |
H41 |
29.6 |
180.0 |
H51 |
C5 |
C4 |
H42 |
139.1 |
60.0 |
C4 |
C5 |
H51 |
C12 |
126.9 |
239.9 |
C4 |
C5 |
H51 |
H52 |
243.5 |
120.0 |
C12 |
C5 |
H51 |
H52 |
116.6 |
240.1 |
H51 |
C5 |
C12 |
N13 |
252.8 |
60.0 |
H51 |
C5 |
C12 |
H121 |
127.5 |
180.0 |
H51 |
C5 |
C12 |
H122 |
18.0 |
299.9 |
H52 |
C5 |
C4 |
H41 |
280.2 |
300.0 |
H52 |
C5 |
C4 |
H42 |
29.6 |
180.0 |
C4 |
C5 |
H52 |
C12 |
233.1 |
120.1 |
C4 |
C5 |
H52 |
H51 |
116.5 |
240.0 |
C12 |
C5 |
H52 |
H51 |
243.4 |
119.9 |
H52 |
C5 |
C12 |
N13 |
2.2 |
300.0 |
H52 |
C5 |
C12 |
H121 |
237.0 |
60.1 |
H52 |
C5 |
C12 |
H122 |
127.5 |
180.0 |
H61 |
C6 |
C1 |
H11 |
180.0 |
300.0 |
H61 |
C6 |
C1 |
H12 |
289.5 |
60.0 |
C1 |
C6 |
H61 |
H62 |
125.1 |
120.0 |
C1 |
C6 |
H61 |
H63 |
242.5 |
240.0 |
H62 |
C6 |
H61 |
H63 |
117.5 |
120.0 |
H62 |
C6 |
C1 |
H11 |
305.2 |
60.0 |
H62 |
C6 |
C1 |
H12 |
54.7 |
180.1 |
C1 |
C6 |
H62 |
H61 |
234.8 |
239.9 |
C1 |
C6 |
H62 |
H63 |
125.3 |
119.9 |
H61 |
C6 |
H62 |
H63 |
250.5 |
240.0 |
H63 |
C6 |
C1 |
H11 |
70.5 |
179.9 |
H63 |
C6 |
C1 |
H12 |
180.0 |
300.0 |
C1 |
C6 |
H63 |
H61 |
117.4 |
120.1 |
C1 |
C6 |
H63 |
H62 |
234.9 |
240.1 |
H61 |
C6 |
H63 |
H62 |
117.5 |
120.0 |
N13 |
C12 |
C5 |
H51 |
252.8 |
60.0 |
N13 |
C12 |
C5 |
H52 |
2.2 |
300.0 |
C5 |
C12 |
N13 |
H121 |
234.7 |
120.0 |
C5 |
C12 |
N13 |
H122 |
125.2 |
240.0 |
H121 |
C12 |
N13 |
H122 |
250.5 |
120.0 |
C14 |
N13 |
C12 |
H13 |
180.0 |
180.0 |
C12 |
N13 |
C14 |
O16 |
358.8 |
-0.0 |
C12 |
N13 |
C14 |
H14 |
178.8 |
180.0 |
H121 |
C12 |
C5 |
H51 |
127.5 |
180.0 |
H121 |
C12 |
C5 |
H52 |
237.0 |
60.1 |
C5 |
C12 |
H121 |
N13 |
125.0 |
239.9 |
C5 |
C12 |
H121 |
H122 |
242.5 |
119.9 |
N13 |
C12 |
H121 |
H122 |
117.5 |
240.0 |
H121 |
C12 |
N13 |
C14 |
246.2 |
60.0 |
H121 |
C12 |
N13 |
H13 |
66.2 |
240.0 |
H122 |
C12 |
C5 |
H51 |
18.0 |
299.9 |
H122 |
C12 |
C5 |
H52 |
127.5 |
180.0 |
C5 |
C12 |
H122 |
N13 |
235.1 |
120.1 |
C5 |
C12 |
H122 |
H121 |
117.5 |
240.1 |
N13 |
C12 |
H122 |
H121 |
242.5 |
120.0 |
H122 |
C12 |
N13 |
C14 |
355.7 |
300.0 |
H122 |
C12 |
N13 |
H13 |
175.7 |
120.0 |
C14 |
N13 |
C12 |
H121 |
246.2 |
60.0 |
C14 |
N13 |
C12 |
H122 |
355.7 |
300.0 |
C12 |
N13 |
C14 |
H13 |
180.0 |
180.0 |
O16 |
C14 |
N13 |
H14 |
180.0 |
180.0 |
H13 |
N13 |
C12 |
H121 |
66.2 |
240.0 |
H13 |
N13 |
C12 |
H122 |
175.7 |
120.0 |
C12 |
N13 |
H13 |
C14 |
180.0 |
180.0 |
H13 |
N13 |
C14 |
O16 |
178.8 |
180.0 |
H13 |
N13 |
C14 |
H14 |
358.8 |
360.0 |
O16 |
C14 |
N13 |
H13 |
178.8 |
180.0 |
N13 |
C14 |
O16 |
H14 |
180.0 |
180.0 |
H14 |
C14 |
N13 |
H13 |
358.8 |
360.0 |
N13 |
C14 |
H14 |
O16 |
180.0 |
180.0 |