PDB Chemical Component HPJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HPJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O21 |
C20 |
1.238 |
1.221 |
| O18 |
N17 |
1.413 |
1.416 |
| C20 |
N17 |
1.381 |
1.346 |
| C20 |
C22 |
1.409 |
1.400 |
| N17 |
C15 |
1.418 |
1.368 |
| C1 |
O2 |
1.427 |
1.428 |
| C22 |
C23 |
1.417 |
1.389 |
| C3 |
O2 |
1.448 |
1.429 |
| C3 |
C4 |
1.537 |
1.530 |
| C15 |
C14 |
1.404 |
1.478 |
| C15 |
C16 |
1.405 |
1.365 |
| C23 |
C16 |
1.408 |
1.408 |
| C23 |
C24 |
1.423 |
1.482 |
| C13 |
C14 |
1.402 |
1.400 |
| C13 |
N12 |
1.325 |
1.314 |
| C4 |
C5 |
1.544 |
1.530 |
| C14 |
C10 |
1.400 |
1.397 |
| N12 |
C11 |
1.347 |
1.328 |
| C10 |
C9 |
1.403 |
1.393 |
| C29 |
C24 |
1.405 |
1.394 |
| C29 |
C28 |
1.406 |
1.381 |
| C24 |
C25 |
1.412 |
1.395 |
| C11 |
C9 |
1.400 |
1.409 |
| C11 |
N6 |
1.333 |
1.374 |
| C9 |
C8 |
1.340 |
1.466 |
| C28 |
C27 |
1.398 |
1.384 |
| N6 |
C5 |
1.485 |
1.465 |
| N6 |
C7 |
1.338 |
1.369 |
| C8 |
C7 |
1.343 |
1.341 |
| C25 |
C26 |
1.404 |
1.380 |
| C27 |
C26 |
1.399 |
1.382 |
| C4 |
H1 |
1.100 |
1.089 |
| C4 |
H2 |
1.100 |
1.090 |
| C5 |
H3 |
1.100 |
1.090 |
| C5 |
H4 |
1.100 |
1.090 |
| C7 |
H5 |
1.080 |
1.080 |
| C8 |
H6 |
1.080 |
1.080 |
| C10 |
H7 |
1.080 |
1.080 |
| C13 |
H8 |
1.080 |
1.080 |
| C3 |
H9 |
1.100 |
1.089 |
| C3 |
H10 |
1.100 |
1.090 |
| C1 |
H11 |
1.100 |
1.090 |
| C1 |
H12 |
1.100 |
1.090 |
| C1 |
H13 |
1.100 |
1.091 |
| C16 |
H14 |
1.080 |
1.080 |
| O18 |
H15 |
0.950 |
0.967 |
| C22 |
H16 |
1.080 |
1.081 |
| C25 |
H17 |
1.080 |
1.080 |
| C26 |
H18 |
1.080 |
1.081 |
| C27 |
H19 |
1.080 |
1.080 |
| C28 |
H20 |
1.080 |
1.080 |
| C29 |
H21 |
1.080 |
1.080 |
Bond Angles for HPJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O21 |
C20 |
C22 |
123.1 |
119.9 |
| C20 |
C22 |
C23 |
120.3 |
119.3 |
| C20 |
C22 |
H16 |
119.8 |
120.3 |
| C3 |
O2 |
C1 |
109.7 |
114.0 |
| O2 |
C1 |
H11 |
109.5 |
109.5 |
| O2 |
C1 |
H12 |
109.5 |
109.5 |
| O2 |
C1 |
H13 |
109.5 |
109.5 |
| C22 |
C23 |
C24 |
121.6 |
120.5 |
| C23 |
C22 |
H16 |
119.8 |
120.3 |
| O2 |
C3 |
H9 |
109.5 |
109.4 |
| O2 |
C3 |
H10 |
109.4 |
109.4 |
| C3 |
C4 |
H1 |
108.4 |
109.5 |
| C3 |
C4 |
H2 |
108.5 |
109.4 |
| C15 |
C16 |
H14 |
119.4 |
120.2 |
| C23 |
C16 |
H14 |
119.4 |
120.2 |
| C23 |
C24 |
C25 |
121.3 |
120.1 |
| N12 |
C13 |
H8 |
118.7 |
119.3 |
| C5 |
C4 |
H1 |
108.4 |
109.5 |
| C5 |
C4 |
H2 |
108.4 |
109.5 |
| C4 |
C5 |
H3 |
108.6 |
109.5 |
| C4 |
C5 |
H4 |
108.7 |
109.5 |
| C14 |
C10 |
C9 |
118.1 |
117.9 |
| C14 |
C10 |
H7 |
121.0 |
121.0 |
| C29 |
C28 |
H20 |
120.2 |
119.9 |
| C24 |
C25 |
C26 |
121.2 |
119.8 |
| C24 |
C25 |
H17 |
119.4 |
120.1 |
| C9 |
C11 |
N6 |
106.6 |
107.0 |
| C11 |
C9 |
C8 |
107.1 |
106.2 |
| C11 |
N6 |
C7 |
109.3 |
110.1 |
| C9 |
C8 |
H6 |
125.8 |
126.6 |
| C28 |
C27 |
H19 |
119.7 |
119.8 |
| N6 |
C5 |
H3 |
108.7 |
109.5 |
| N6 |
C5 |
H4 |
108.6 |
109.4 |
| N6 |
C7 |
H5 |
125.8 |
125.0 |
| C8 |
C7 |
H5 |
125.8 |
125.0 |
| C26 |
C25 |
H17 |
119.4 |
120.1 |
| C25 |
C26 |
H18 |
120.3 |
119.9 |
| C27 |
C26 |
H18 |
120.3 |
119.9 |
| H1 |
C4 |
H2 |
109.5 |
109.5 |
| H3 |
C5 |
H4 |
109.5 |
109.4 |
| H9 |
C3 |
H10 |
109.5 |
109.5 |
| H11 |
C1 |
H12 |
109.5 |
109.5 |
| H11 |
C1 |
H13 |
109.5 |
109.5 |
| H12 |
C1 |
H13 |
109.5 |
109.5 |
Torsion Angles for HPJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O21 |
C20 |
C22 |
C23 |
178.5 |
180.3 |
| O21 |
C20 |
C22 |
H16 |
358.6 |
0.0 |
| C20 |
C22 |
C23 |
C24 |
181.4 |
180.0 |
| C23 |
C22 |
C20 |
H16 |
180.0 |
180.3 |
| N17 |
C15 |
C16 |
H14 |
180.0 |
180.2 |
| C1 |
O2 |
C3 |
H9 |
297.2 |
59.9 |
| C1 |
O2 |
C3 |
H10 |
57.2 |
300.0 |
| H11 |
C1 |
O2 |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
O2 |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
O2 |
H13 |
240.0 |
240.0 |
| C20 |
C22 |
C23 |
H16 |
180.0 |
179.7 |
| C22 |
C23 |
C16 |
H14 |
179.8 |
180.1 |
| C22 |
C23 |
C24 |
C25 |
149.4 |
65.1 |
| C3 |
O2 |
C1 |
H11 |
180.0 |
180.0 |
| C3 |
O2 |
C1 |
H12 |
300.0 |
300.0 |
| C3 |
O2 |
C1 |
H13 |
60.0 |
60.0 |
| O2 |
C3 |
C4 |
H1 |
45.8 |
60.0 |
| O2 |
C3 |
C4 |
H2 |
164.6 |
299.9 |
| H9 |
C3 |
O2 |
H10 |
240.0 |
119.9 |
| C5 |
C4 |
C3 |
H1 |
239.4 |
120.0 |
| C5 |
C4 |
C3 |
H2 |
120.6 |
240.1 |
| C3 |
C4 |
C5 |
H3 |
71.6 |
300.0 |
| C3 |
C4 |
C5 |
H4 |
190.6 |
60.0 |
| H1 |
C4 |
C3 |
H2 |
241.2 |
120.1 |
| C15 |
C14 |
C10 |
H7 |
357.0 |
359.7 |
| C23 |
C16 |
C15 |
H14 |
180.0 |
180.1 |
| C15 |
C16 |
C23 |
H14 |
180.0 |
179.9 |
| C24 |
C23 |
C22 |
H16 |
1.4 |
0.2 |
| C24 |
C23 |
C16 |
H14 |
0.4 |
359.9 |
| C23 |
C24 |
C25 |
C26 |
181.2 |
179.9 |
| C23 |
C24 |
C25 |
H17 |
1.2 |
359.9 |
| C13 |
C14 |
C10 |
H7 |
183.3 |
179.9 |
| C3 |
C4 |
C5 |
H1 |
120.6 |
239.9 |
| C3 |
C4 |
C5 |
H2 |
239.4 |
119.9 |
| N6 |
C5 |
C4 |
H3 |
239.5 |
240.0 |
| N6 |
C5 |
C4 |
H4 |
120.5 |
120.0 |
| H1 |
C4 |
C5 |
H2 |
118.8 |
240.0 |
| H3 |
C5 |
C4 |
H4 |
241.0 |
240.0 |
| C14 |
C10 |
C9 |
H7 |
180.0 |
179.9 |
| C10 |
C9 |
C11 |
N6 |
180.1 |
180.0 |
| C10 |
C9 |
C8 |
H6 |
1.8 |
360.0 |
| C29 |
C24 |
C25 |
H17 |
182.1 |
180.2 |
| C29 |
C28 |
C27 |
H19 |
178.3 |
179.7 |
| C26 |
C25 |
C24 |
H17 |
180.0 |
180.1 |
| C24 |
C25 |
C26 |
H18 |
179.2 |
180.0 |
| C14 |
C10 |
C9 |
C11 |
360.0 |
360.0 |
| C9 |
C11 |
N6 |
C7 |
357.1 |
0.0 |
| C11 |
C9 |
C8 |
H6 |
179.0 |
180.0 |
| N6 |
C11 |
C9 |
C8 |
2.4 |
360.0 |
| C11 |
N6 |
C5 |
H3 |
169.8 |
325.0 |
| C11 |
N6 |
C5 |
H4 |
50.7 |
205.0 |
| C11 |
N6 |
C7 |
H5 |
182.4 |
180.1 |
| C14 |
C10 |
C9 |
C8 |
176.9 |
180.0 |
| C8 |
C9 |
C11 |
N6 |
2.4 |
360.0 |
| C9 |
C8 |
C7 |
H5 |
179.2 |
179.9 |
| C28 |
C27 |
C26 |
H18 |
180.5 |
180.0 |
| N6 |
C5 |
C4 |
H1 |
190.6 |
300.0 |
| N6 |
C5 |
C4 |
H2 |
71.8 |
60.0 |
| C4 |
C5 |
N6 |
H3 |
120.5 |
120.1 |
| C4 |
C5 |
N6 |
H4 |
239.5 |
240.0 |
| H3 |
C5 |
N6 |
H4 |
119.0 |
119.9 |
| C7 |
N6 |
C5 |
H3 |
352.5 |
144.9 |
| C7 |
N6 |
C5 |
H4 |
233.4 |
25.0 |
| C8 |
C7 |
N6 |
H5 |
180.0 |
179.9 |
| C11 |
C9 |
C8 |
C7 |
359.0 |
360.0 |
| C11 |
N6 |
C7 |
C8 |
2.4 |
360.0 |
| N6 |
C7 |
C8 |
H5 |
180.0 |
180.1 |
| C24 |
C25 |
C26 |
H17 |
180.0 |
179.9 |
| C27 |
C26 |
C25 |
H18 |
180.0 |
180.1 |
| C27 |
C26 |
C25 |
H17 |
179.2 |
180.1 |
| C25 |
C26 |
C27 |
H18 |
180.0 |
179.9 |
| C3 |
C4 |
H1 |
H2 |
118.2 |
240.0 |
| C5 |
C4 |
H1 |
H2 |
241.9 |
120.0 |
| H1 |
C4 |
C5 |
H3 |
311.1 |
60.0 |
| H1 |
C4 |
C5 |
H4 |
70.1 |
180.0 |
| C3 |
C4 |
H2 |
H1 |
241.8 |
120.1 |
| C5 |
C4 |
H2 |
H1 |
118.1 |
240.0 |
| H2 |
C4 |
C5 |
H3 |
192.3 |
180.1 |
| H2 |
C4 |
C5 |
H4 |
311.3 |
300.1 |
| H3 |
C5 |
C4 |
H1 |
311.1 |
60.0 |
| H3 |
C5 |
C4 |
H2 |
192.3 |
180.1 |
| C4 |
C5 |
H3 |
H4 |
118.5 |
120.0 |
| N6 |
C5 |
H3 |
H4 |
241.5 |
240.1 |
| H4 |
C5 |
C4 |
H1 |
70.1 |
180.0 |
| H4 |
C5 |
C4 |
H2 |
311.3 |
300.1 |
| C4 |
C5 |
H4 |
H3 |
241.5 |
240.0 |
| N6 |
C5 |
H4 |
H3 |
118.5 |
120.0 |
| H6 |
C8 |
C7 |
H5 |
359.2 |
359.9 |
| C14 |
C10 |
H7 |
C9 |
180.0 |
180.1 |
| H9 |
C3 |
O2 |
C1 |
297.2 |
59.9 |
| O2 |
C3 |
H9 |
H10 |
119.9 |
240.1 |
| H9 |
C3 |
C4 |
H1 |
285.8 |
180.0 |
| H9 |
C3 |
C4 |
H2 |
44.6 |
59.9 |
| H10 |
C3 |
O2 |
C1 |
57.2 |
300.0 |
| O2 |
C3 |
H10 |
H9 |
240.1 |
119.9 |
| H10 |
C3 |
C4 |
H1 |
165.8 |
300.0 |
| H10 |
C3 |
C4 |
H2 |
284.6 |
180.0 |
| O2 |
C1 |
H11 |
H12 |
120.0 |
120.0 |
| O2 |
C1 |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
C1 |
H11 |
H13 |
120.0 |
120.0 |
| O2 |
C1 |
H12 |
H11 |
240.0 |
240.0 |
| O2 |
C1 |
H12 |
H13 |
120.0 |
120.0 |
| H11 |
C1 |
H12 |
H13 |
240.0 |
240.0 |
| O2 |
C1 |
H13 |
H11 |
120.0 |
120.0 |
| O2 |
C1 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
H13 |
H12 |
120.0 |
120.0 |
| C20 |
C22 |
H16 |
C23 |
180.0 |
180.3 |
| H16 |
C22 |
C23 |
C24 |
1.4 |
0.2 |
| C24 |
C25 |
H17 |
C26 |
180.0 |
180.1 |
| H17 |
C25 |
C26 |
H18 |
359.2 |
0.0 |
| H18 |
C26 |
C25 |
H17 |
359.2 |
0.0 |
| H19 |
C27 |
C26 |
H18 |
0.5 |
0.1 |
| H20 |
C28 |
C27 |
H19 |
358.3 |
360.0 |
| H21 |
C29 |
C28 |
H20 |
3.1 |
0.1 |