PDB Chemical Component HPH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HPH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.436 |
1.430 |
| C |
CA |
1.534 |
1.530 |
| C |
OXT |
1.430 |
1.429 |
| O |
HO |
0.950 |
0.966 |
| CA |
N |
1.472 |
1.469 |
| CA |
CB |
1.567 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.001 |
1.008 |
| CB |
CG |
1.520 |
1.508 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.089 |
| CG |
CD1 |
1.417 |
1.382 |
| CG |
CD2 |
1.399 |
1.382 |
| CD1 |
CE1 |
1.395 |
1.382 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
CE2 |
1.392 |
1.381 |
| CD2 |
HD2 |
1.080 |
1.081 |
| CE1 |
CZ |
1.398 |
1.383 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
CZ |
1.379 |
1.383 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CZ |
HZ |
1.080 |
1.079 |
| C |
HC |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HPH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
107.0 |
109.5 |
| O |
C |
OXT |
143.9 |
109.4 |
| C |
O |
HO |
109.5 |
114.0 |
| O |
C |
HC |
75.3 |
109.5 |
| CA |
C |
OXT |
108.7 |
109.5 |
| C |
CA |
N |
117.8 |
109.5 |
| C |
CA |
CB |
106.9 |
109.4 |
| C |
CA |
HA |
105.8 |
109.5 |
| CA |
C |
HC |
167.1 |
109.5 |
| OXT |
C |
HC |
71.0 |
109.5 |
| C |
OXT |
HXT |
109.5 |
113.9 |
| N |
CA |
CB |
110.1 |
109.5 |
| N |
CA |
HA |
102.3 |
109.5 |
| CA |
N |
H |
109.5 |
110.9 |
| CA |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
HA |
114.1 |
109.5 |
| CA |
CB |
CG |
102.6 |
109.4 |
| CA |
CB |
HB2 |
111.8 |
109.5 |
| CA |
CB |
HB3 |
111.8 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CG |
CB |
HB2 |
111.8 |
109.5 |
| CG |
CB |
HB3 |
111.8 |
109.5 |
| CB |
CG |
CD1 |
119.3 |
119.9 |
| CB |
CG |
CD2 |
119.0 |
120.0 |
| HB2 |
CB |
HB3 |
107.0 |
109.4 |
| CD1 |
CG |
CD2 |
121.4 |
120.0 |
| CG |
CD1 |
CE1 |
117.6 |
120.0 |
| CG |
CD1 |
HD1 |
121.2 |
120.1 |
| CG |
CD2 |
CE2 |
120.0 |
120.0 |
| CG |
CD2 |
HD2 |
120.0 |
119.9 |
| CE1 |
CD1 |
HD1 |
121.2 |
119.9 |
| CD1 |
CE1 |
CZ |
120.0 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.0 |
120.1 |
| CE2 |
CD2 |
HD2 |
120.0 |
120.0 |
| CD2 |
CE2 |
CZ |
118.6 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.7 |
120.0 |
| CZ |
CE1 |
HE1 |
120.0 |
119.9 |
| CE1 |
CZ |
CE2 |
122.3 |
119.9 |
| CE1 |
CZ |
HZ |
118.8 |
120.0 |
| CZ |
CE2 |
HE2 |
120.7 |
119.9 |
| CE2 |
CZ |
HZ |
118.9 |
120.0 |
Torsion Angles for HPH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
OXT |
171.5 |
240.0 |
| O |
C |
CA |
N |
155.9 |
180.0 |
| O |
C |
CA |
CB |
280.4 |
300.0 |
| O |
C |
CA |
HA |
42.4 |
60.0 |
| CA |
C |
O |
HC |
193.2 |
120.1 |
| OXT |
C |
O |
HC |
21.8 |
240.0 |
| O |
C |
OXT |
HXT |
180.0 |
60.0 |
| O |
C |
CA |
OXT |
185.3 |
120.0 |
| CA |
C |
O |
HO |
180.0 |
300.1 |
| O |
C |
CA |
HC |
98.6 |
240.0 |
| OXT |
C |
CA |
HC |
273.3 |
120.0 |
| CA |
C |
OXT |
HXT |
8.7 |
180.0 |
| N |
CA |
C |
CB |
235.5 |
240.0 |
| N |
CA |
C |
HA |
113.5 |
120.0 |
| C |
CA |
N |
H |
180.0 |
296.0 |
| C |
CA |
N |
H2 |
300.0 |
60.0 |
| CB |
CA |
C |
HA |
238.0 |
240.0 |
| C |
CA |
CB |
CG |
164.4 |
175.0 |
| C |
CA |
CB |
HB2 |
284.4 |
295.0 |
| C |
CA |
CB |
HB3 |
44.4 |
55.0 |
| O |
C |
OXT |
CA |
171.4 |
240.0 |
| OXT |
C |
O |
HO |
8.5 |
60.0 |
| O |
C |
OXT |
HC |
337.7 |
120.0 |
| OXT |
C |
CA |
N |
330.6 |
60.1 |
| OXT |
C |
CA |
CB |
95.1 |
180.0 |
| OXT |
C |
CA |
HA |
217.1 |
300.0 |
| CA |
C |
OXT |
HC |
166.3 |
240.0 |
| HO |
O |
C |
CA |
180.0 |
300.1 |
| HO |
O |
C |
OXT |
8.5 |
60.0 |
| HO |
O |
C |
HC |
346.8 |
180.0 |
| N |
CA |
C |
OXT |
330.6 |
60.1 |
| C |
CA |
N |
CB |
122.9 |
119.9 |
| C |
CA |
N |
HA |
244.6 |
239.9 |
| N |
CA |
C |
HC |
57.3 |
300.0 |
| CB |
CA |
N |
HA |
121.7 |
120.0 |
| N |
CA |
CB |
CG |
293.5 |
295.0 |
| N |
CA |
CB |
HB2 |
53.5 |
55.0 |
| N |
CA |
CB |
HB3 |
173.5 |
175.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
C |
OXT |
95.1 |
180.0 |
| C |
CA |
CB |
N |
230.9 |
240.0 |
| C |
CA |
CB |
HA |
116.6 |
120.0 |
| CB |
CA |
C |
HC |
181.8 |
60.0 |
| N |
CA |
CB |
HA |
245.7 |
240.0 |
| CB |
CA |
N |
H |
57.1 |
176.0 |
| CB |
CA |
N |
H2 |
177.1 |
300.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.0 |
120.0 |
| CA |
CB |
CG |
CD1 |
285.9 |
90.0 |
| CA |
CB |
CG |
CD2 |
100.1 |
269.7 |
| HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
| HA |
CA |
C |
OXT |
217.1 |
300.0 |
| C |
CA |
HA |
N |
123.9 |
120.0 |
| C |
CA |
HA |
CB |
242.7 |
240.0 |
| HA |
CA |
C |
HC |
303.8 |
180.0 |
| N |
CA |
HA |
CB |
118.9 |
120.0 |
| HA |
CA |
N |
H |
295.4 |
56.0 |
| HA |
CA |
N |
H2 |
55.4 |
180.0 |
| HA |
CA |
CB |
CG |
47.8 |
55.0 |
| HA |
CA |
CB |
HB2 |
167.8 |
175.0 |
| HA |
CA |
CB |
HB3 |
287.8 |
295.0 |
| H |
N |
CA |
CB |
57.1 |
176.0 |
| H |
N |
CA |
HA |
295.4 |
56.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H2 |
N |
CA |
CB |
177.1 |
300.0 |
| H2 |
N |
CA |
HA |
55.4 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| CG |
CB |
CA |
HA |
47.8 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
240.0 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
120.0 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
185.8 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
176.9 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
356.9 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
183.5 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
3.5 |
359.9 |
| HB2 |
CB |
CA |
HA |
167.8 |
175.0 |
| CA |
CB |
HB2 |
CG |
245.6 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
122.8 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
237.2 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
165.8 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
340.1 |
149.7 |
| HB3 |
CB |
CA |
HA |
287.8 |
295.0 |
| CA |
CB |
HB3 |
CG |
114.4 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
237.2 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
122.8 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
45.8 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
220.1 |
29.8 |
| CD1 |
CG |
CB |
HB2 |
165.8 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
45.8 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
174.1 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
357.6 |
359.7 |
| CD1 |
CG |
CD2 |
HD2 |
177.6 |
179.6 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.1 |
| CG |
CD1 |
CE1 |
CZ |
357.5 |
359.9 |
| CG |
CD1 |
CE1 |
HE1 |
177.5 |
179.9 |
| CD2 |
CG |
CB |
HB2 |
340.1 |
149.7 |
| CD2 |
CG |
CB |
HB3 |
220.1 |
29.8 |
| CB |
CG |
CD2 |
CD1 |
185.9 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
2.8 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
182.8 |
180.2 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CG |
CD2 |
CE2 |
CZ |
1.7 |
360.0 |
| CG |
CD2 |
CE2 |
HE2 |
181.6 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
2.8 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
179.9 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
1.9 |
359.8 |
| CD1 |
CE1 |
CZ |
HZ |
181.9 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
182.8 |
180.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.1 |
| HD1 |
CD1 |
CE1 |
CZ |
177.5 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
357.5 |
360.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
CD2 |
358.5 |
0.3 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
HZ |
178.6 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.1 |
| HD2 |
CD2 |
CE2 |
CZ |
181.6 |
180.1 |
| HD2 |
CD2 |
CE2 |
HE2 |
1.6 |
0.1 |
| CZ |
CE1 |
CD1 |
HD1 |
177.5 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
358.5 |
0.3 |
| CE1 |
CZ |
CE2 |
HE2 |
178.6 |
180.2 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
179.7 |
| HE1 |
CE1 |
CD1 |
HD1 |
357.5 |
360.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
CE2 |
181.9 |
179.8 |
| HE1 |
CE1 |
CZ |
HZ |
1.9 |
0.1 |
| CZ |
CE2 |
CD2 |
HD2 |
181.6 |
180.1 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CE2 |
CZ |
CE1 |
HE1 |
181.9 |
179.8 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.3 |
| HE2 |
CE2 |
CD2 |
HD2 |
1.6 |
0.1 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
HZ |
358.6 |
360.0 |
| HZ |
CZ |
CE1 |
HE1 |
1.9 |
0.1 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
179.7 |
| HZ |
CZ |
CE2 |
HE2 |
358.6 |
360.0 |
| O |
C |
HC |
CA |
257.8 |
120.0 |
| O |
C |
HC |
OXT |
166.6 |
240.0 |
| HC |
C |
O |
HO |
346.8 |
180.0 |
| CA |
C |
HC |
OXT |
268.8 |
120.0 |
| HC |
C |
CA |
N |
57.3 |
300.0 |
| HC |
C |
CA |
CB |
181.8 |
60.0 |
| HC |
C |
CA |
HA |
303.8 |
180.0 |
| HC |
C |
OXT |
HXT |
202.3 |
300.0 |
| HXT |
OXT |
C |
HC |
202.3 |
300.0 |